Experiment set4IT024 for Pantoea sp. MT58

Compare to:

nitrogen source Sodium nitrate 5mM

200 most detrimental genes:

  gene name fitness t score description  
IAI47_06940 +1.9 2.3 tyrosine-protein kinase Wzc compare
IAI47_01135 +1.9 2.7 hypothetical protein compare
IAI47_01820 +1.8 14.3 two-component system response regulator OmpR compare
IAI47_18215 +1.5 4.1 Trk system potassium transporter TrkH compare
IAI47_06750 +1.4 11.3 outer membrane permeability protein SanA compare
IAI47_01825 +1.4 10.8 two-component system sensor histidine kinase EnvZ compare
IAI47_15970 +1.3 2.7 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
IAI47_17560 +1.3 1.6 ROK family transcriptional regulator compare
IAI47_09245 +1.3 5.8 YmiA family putative membrane protein compare
IAI47_00940 +1.3 8.4 HTH-type transcriptional repressor FabR compare
IAI47_06395 +1.3 3.7 NADH-quinone oxidoreductase subunit NuoI compare
IAI47_21880 +1.2 1.0 ParA family protein compare
IAI47_01750 +1.2 6.5 glycerol-3-phosphate dehydrogenase compare
IAI47_02345 +1.1 1.2 5S ribosomal RNA compare
IAI47_05050 +1.1 4.7 cytoskeleton protein RodZ compare
IAI47_21830 +1.1 2.2 hypothetical protein compare
IAI47_03610 +1.1 5.3 YqgE/AlgH family protein compare
IAI47_13050 +1.1 4.2 YbjN domain-containing protein compare
IAI47_03550 +1.1 8.9 membrane-bound lytic murein transglycosylase MltC compare
IAI47_06625 +1.0 7.9 bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase compare
IAI47_15995 +1.0 1.5 leu operon leader peptide compare
IAI47_07970 +1.0 6.3 flagellar type III secretion system protein FliR compare
IAI47_00935 +1.0 4.5 Si-specific NAD(P)(+) transhydrogenase compare
IAI47_06365 +1.0 3.9 NADH-quinone oxidoreductase subunit B compare
IAI47_05865 +1.0 5.8 hypothetical protein compare
IAI47_08280 +0.9 6.2 flagellar transcriptional regulator FlhD compare
IAI47_04855 +0.9 4.4 anti-sigma-E factor RseA compare
IAI47_10725 +0.9 3.0 DUF1656 domain-containing protein compare
IAI47_06400 +0.9 3.7 NADH-quinone oxidoreductase subunit J compare
IAI47_06565 +0.9 2.9 YejL family protein compare
IAI47_12050 +0.9 6.5 cell division protein YceG compare
IAI47_18470 +0.9 7.3 ECA oligosaccharide polymerase compare
IAI47_00660 +0.9 6.9 putative lipopolysaccharide heptosyltransferase III compare
IAI47_11690 +0.9 5.6 type VI secretion system baseplate subunit TssK compare
IAI47_02460 +0.9 8.0 AsmA2 domain-containing protein YhdP compare
IAI47_11685 +0.9 6.1 DotU family type VI secretion system protein compare
IAI47_14325 +0.9 2.6 ribosome-associated protein YbcJ compare
IAI47_11220 +0.8 4.5 serine/threonine-protein phosphatase compare
IAI47_00670 +0.8 7.7 sugar glycosyltransferase compare
IAI47_06390 +0.8 2.5 NADH-quinone oxidoreductase subunit NuoH compare
IAI47_04450 +0.8 2.0 tRNA-Ala compare
IAI47_16995 +0.8 2.4 protein YrbN compare
IAI47_01780 +0.8 1.8 Fe-S biogenesis protein NfuA compare
IAI47_05045 +0.8 4.3 type IV pilus biogenesis/stability protein PilW compare
IAI47_14685 +0.8 6.0 cytochrome o ubiquinol oxidase subunit I compare
IAI47_14015 +0.8 3.7 ribosome silencing factor compare
IAI47_18580 +0.8 6.5 insulinase family protein compare
IAI47_14700 +0.8 4.6 protoheme IX farnesyltransferase compare
IAI47_08285 +0.8 5.2 flagellar transcriptional regulator FlhC compare
IAI47_11210 +0.8 4.7 type VI secretion system-associated protein TagF compare
IAI47_01545 +0.8 4.5 cell division ATP-binding protein FtsE compare
IAI47_14690 +0.7 4.1 cytochrome o ubiquinol oxidase subunit III compare
IAI47_11610 +0.7 3.8 serine/threonine-protein phosphatase compare
IAI47_08035 +0.7 1.5 flagellar hook-basal body complex protein FliE compare
IAI47_15605 +0.7 1.0 Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC compare
IAI47_18485 +0.7 6.0 dTDP-4-amino-4,6-dideoxygalactose transaminase compare
IAI47_12060 +0.7 2.8 beta-ketoacyl-ACP synthase II compare
IAI47_17895 +0.7 3.5 diacylglycerol kinase compare
IAI47_21790 +0.7 3.0 helix-turn-helix domain-containing protein compare
IAI47_17155 +0.7 5.1 calcium/sodium antiporter compare
IAI47_12570 +0.7 0.9 tRNA-Ser compare
IAI47_16420 +0.7 5.5 LacI family DNA-binding transcriptional regulator compare
IAI47_06410 +0.7 4.1 NADH-quinone oxidoreductase subunit L compare
IAI47_09675 +0.7 1.7 YoaK family small membrane protein compare
IAI47_07350 +0.7 0.9 hypothetical protein compare
IAI47_13850 +0.7 2.7 LexA regulated protein compare
IAI47_15485 +0.7 1.2 molecular chaperone Skp compare
IAI47_18465 +0.7 5.0 lipopolysaccharide N-acetylmannosaminouronosyltransferase compare
IAI47_18510 +0.7 5.0 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
IAI47_11515 +0.7 1.5 hypothetical protein compare
IAI47_00675 +0.7 5.8 glycosyltransferase family 9 protein compare
IAI47_12775 +0.7 4.7 YcbK family protein compare
IAI47_03555 +0.7 3.5 oxidative damage protection protein compare
IAI47_14695 +0.7 3.4 cytochrome o ubiquinol oxidase subunit IV compare
IAI47_06370 +0.6 4.2 NADH-quinone oxidoreductase subunit C/D compare
IAI47_10555 +0.6 2.2 hypothetical protein compare
IAI47_12760 +0.6 4.8 porin OmpF compare
IAI47_14040 +0.6 5.6 D-alanyl-D-alanine carboxypeptidase DacA compare
IAI47_18475 +0.6 4.5 TDP-N-acetylfucosamine:lipid II N-acetylfucosaminyltransferase compare
IAI47_18435 +0.6 5.2 uroporphyrinogen-III C-methyltransferase compare
IAI47_03640 +0.6 5.6 glycosyltransferase compare
IAI47_19050 +0.6 2.2 hypothetical protein compare
IAI47_08020 +0.6 3.5 flagellar assembly protein FliH compare
IAI47_06955 +0.6 4.6 acyltransferase compare
IAI47_17385 +0.6 1.4 CDP-alcohol phosphatidyltransferase family protein compare
IAI47_04740 +0.6 2.0 hypothetical protein compare
IAI47_14710 +0.6 3.2 YajQ family cyclic di-GMP-binding protein compare
IAI47_12145 +0.6 2.7 flagellar basal body rod protein FlgF compare
IAI47_02380 +0.6 1.2 DNA-binding transcriptional regulator Fis compare
IAI47_17780 +0.6 5.3 hypothetical protein compare
IAI47_00770 +0.6 0.6 general stress protein compare
IAI47_17970 +0.6 2.4 hypothetical protein compare
IAI47_06360 +0.6 1.6 NADH-quinone oxidoreductase subunit A compare
IAI47_06415 +0.6 2.9 NADH-quinone oxidoreductase subunit M compare
IAI47_05745 +0.6 1.2 protease FtsH-inhibitory lysogeny factor CIII compare
IAI47_08525 +0.6 3.6 DNA polymerase III subunit theta compare
IAI47_07000 +0.6 4.3 UDP-glucose 4-epimerase GalE compare
IAI47_03645 +0.6 5.1 O-antigen ligase family protein compare
IAI47_06420 +0.6 2.7 NADH-quinone oxidoreductase subunit NuoN compare
IAI47_13415 +0.6 4.5 L,D-transpeptidase family protein compare
IAI47_06405 +0.6 2.3 NADH-quinone oxidoreductase subunit NuoK compare
IAI47_07990 +0.6 1.7 flagellar motor switch protein FliN compare
IAI47_07475 +0.6 0.8 hypothetical protein compare
IAI47_10755 +0.6 0.7 DUF1289 domain-containing protein compare
IAI47_11675 +0.5 3.3 type VI secretion system-associated protein TagF compare
IAI47_06380 +0.5 1.5 NADH-quinone oxidoreductase subunit NuoF compare
IAI47_18240 +0.5 1.3 NAD(P)H-flavin reductase compare
IAI47_18050 +0.5 4.0 DUF1481 domain-containing protein compare
IAI47_08855 +0.5 2.2 septum site-determining protein MinC compare
IAI47_04935 +0.5 3.4 HAMP domain-containing histidine kinase compare
IAI47_06385 +0.5 2.6 NADH-quinone oxidoreductase subunit NuoG compare
IAI47_11360 +0.5 1.6 hypothetical protein compare
IAI47_02840 +0.5 2.6 YraN family protein compare
IAI47_12165 +0.5 2.7 flagellar basal body rod protein FlgB compare
IAI47_11680 +0.5 4.7 type VI secretion system membrane subunit TssM compare
IAI47_17140 +0.5 4.0 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
IAI47_14680 +0.5 2.8 cytochrome o ubiquinol oxidase subunit II compare
IAI47_00300 +0.5 0.7 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
IAI47_05830 +0.5 1.9 hypothetical protein compare
IAI47_11695 +0.5 3.1 type VI secretion system lipoprotein TssJ compare
IAI47_15875 +0.5 2.9 cell division protein ZapD compare
IAI47_01740 +0.5 1.5 triphosphoribosyl-dephospho-CoA synthase compare
IAI47_04355 +0.5 3.2 S-ribosylhomocysteine lyase compare
IAI47_05420 +0.5 0.4 PTS glucose transporter subunit IIA compare
IAI47_07980 +0.5 2.9 flagellar type III secretion system pore protein FliP compare
IAI47_14470 +0.5 1.4 YbaB/EbfC family nucleoid-associated protein compare
IAI47_08765 +0.5 2.9 PTS mannose/fructose/sorbose transporter subunit IIC compare
IAI47_10785 +0.5 3.3 C40 family peptidase compare
IAI47_15395 +0.5 3.5 MetQ/NlpA family lipoprotein compare
IAI47_10995 +0.5 2.8 type V toxin-antitoxin system endoribonuclease antitoxin GhoS compare
IAI47_07380 +0.5 2.1 ABC transporter ATP-binding protein compare
IAI47_19945 +0.5 0.6 hypothetical protein compare
IAI47_15690 +0.5 2.5 hypoxanthine phosphoribosyltransferase compare
IAI47_12155 +0.5 3.3 flagellar hook assembly protein FlgD compare
IAI47_01550 +0.5 3.0 cell division protein FtsX compare
IAI47_06790 +0.5 2.2 alkyl hydroperoxide reductase subunit C compare
IAI47_15600 +0.5 0.7 Fe(3+)-hydroxamate ABC transporter substrate-binding protein FhuD compare
IAI47_00655 +0.5 1.0 glycosyltransferase family 4 protein compare
IAI47_07995 +0.5 3.5 flagellar motor switch protein FliM compare
IAI47_19350 +0.5 2.2 DUF305 domain-containing protein compare
IAI47_18490 +0.5 2.2 dTDP-4-amino-4,6-dideoxy-D-galactose acyltransferase compare
IAI47_12130 +0.5 3.6 flagellar basal body P-ring protein FlgI compare
IAI47_08025 +0.5 3.3 flagellar motor switch protein FliG compare
IAI47_13790 +0.5 2.0 DUF969 domain-containing protein compare
IAI47_09550 +0.4 1.7 hypothetical protein compare
IAI47_07975 +0.4 2.0 flagellar biosynthesis protein FliQ compare
IAI47_15390 +0.4 3.3 methionine ABC transporter permease MetI compare
IAI47_05855 +0.4 1.9 recombination protein NinG compare
IAI47_15840 +0.4 2.2 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD compare
IAI47_13765 +0.4 1.0 succinate dehydrogenase cytochrome b556 subunit compare
IAI47_08030 +0.4 3.3 flagellar M-ring protein FliF compare
IAI47_04565 +0.4 2.7 homocysteine S-methyltransferase compare
IAI47_04295 +0.4 1.2 nicotinamide-nucleotide amidase compare
IAI47_00440 +0.4 2.3 Der GTPase-activating protein YihI compare
IAI47_14400 +0.4 3.2 copper-exporting P-type ATPase CopA compare
IAI47_05185 +0.4 1.9 uracil phosphoribosyltransferase compare
IAI47_13645 +0.4 2.1 helix-turn-helix domain-containing protein compare
IAI47_11520 +0.4 1.9 type VI secretion system tip protein VgrG compare
IAI47_09790 +0.4 1.0 DUF1161 domain-containing protein compare
IAI47_08345 +0.4 3.1 flagellar type III secretion system protein FlhB compare
IAI47_18495 +0.4 2.4 glucose-1-phosphate thymidylyltransferase RfbA compare
IAI47_08465 +0.4 2.6 zinc ABC transporter substrate-binding protein ZnuA compare
IAI47_08730 +0.4 1.9 YebO family protein compare
IAI47_18595 +0.4 3.3 endoglucanase compare
IAI47_00875 +0.4 1.0 met regulon transcriptional regulator MetJ compare
IAI47_14980 +0.4 1.6 hypothetical protein compare
IAI47_10835 +0.4 0.5 tRNA-Val compare
IAI47_06780 +0.4 2.4 iron-sulfur cluster carrier protein ApbC compare
IAI47_12320 +0.4 1.9 hotdog family protein compare
IAI47_12125 +0.4 2.7 flagellar assembly peptidoglycan hydrolase FlgJ compare
IAI47_08960 +0.4 2.4 bifunctional nicotinamidase/pyrazinamidase compare
IAI47_06030 +0.4 1.5 hypothetical protein compare
IAI47_17050 +0.4 2.0 preprotein translocase subunit SecG compare
IAI47_00720 +0.4 3.1 murein hydrolase activator EnvC compare
IAI47_10345 +0.4 2.8 YdgA family protein compare
IAI47_11880 +0.4 0.7 hypothetical protein compare
IAI47_02395 +0.4 3.4 sodium/pantothenate symporter compare
IAI47_10500 +0.4 3.0 dipeptide/tripeptide permease DtpA compare
IAI47_15460 +0.4 2.3 ribonuclease HII compare
IAI47_18505 +0.4 2.3 UDP-N-acetyl-D-mannosamine dehydrogenase compare
IAI47_21675 +0.4 1.4 helix-turn-helix domain-containing protein compare
IAI47_04235 +0.4 3.1 RNA polymerase sigma factor RpoS compare
IAI47_12170 +0.4 2.7 flagellar basal body P-ring formation protein FlgA compare
IAI47_03825 +0.4 2.7 bifunctional protein-disulfide isomerase/oxidoreductase DsbC compare
IAI47_00825 +0.4 3.2 glycerol kinase GlpK compare
IAI47_08455 +0.4 1.9 zinc ABC transporter permease subunit ZnuB compare
IAI47_20450 +0.4 2.0 LysR family transcriptional regulator compare
IAI47_05845 +0.4 1.7 hypothetical protein compare
IAI47_08715 +0.4 2.6 MFS transporter compare
IAI47_11995 +0.4 1.8 beta-N-acetylhexosaminidase compare
IAI47_08010 +0.4 2.3 flagella biosynthesis chaperone FliJ compare
IAI47_05015 +0.4 2.2 enhanced serine sensitivity protein SseB compare
IAI47_15265 +0.4 2.3 amino acid ABC transporter permease compare
IAI47_06690 +0.4 1.9 iron ABC transporter permease compare
IAI47_07470 +0.4 1.0 AlpA family transcriptional regulator compare
IAI47_16600 +0.4 0.8 tRNA-OTHER compare
IAI47_17980 +0.4 2.1 capsule biosynthesis GfcC family protein compare
IAI47_21080 +0.4 1.2 transposase compare
IAI47_01535 +0.4 1.4 16S rRNA (guanine(966)-N(2))-methyltransferase compare
IAI47_16560 +0.4 2.0 hypothetical protein compare


Specific Phenotypes

For 12 genes in this experiment

For nitrogen source Sodium nitrate in Pantoea sp. MT58

For nitrogen source Sodium nitrate across organisms