Experiment set4IT024 for Sphingomonas koreensis DSMZ 15582

Compare to:

LB with methylglyoxal 0.001 vol%

200 most important genes:

  gene name fitness t score description  
Ga0059261_2761 -3.7 -15.8 Lactoylglutathione lyase and related lyases conserved
Ga0059261_4188 -3.1 -7.8 pyridoxal-dependent decarboxylase, exosortase A system-associated compare
Ga0059261_0349 -2.6 -5.3 MarR family compare
Ga0059261_3186 -2.5 -13.3 Excinuclease ABC subunit C conserved
Ga0059261_4186 -2.4 -3.0 Phosphopantetheine attachment site compare
Ga0059261_2759 -2.4 -13.1 hydroxyacylglutathione hydrolase conserved
Ga0059261_2707 -2.4 -8.2 fructose-1,6-bisphosphatase, class II compare
Ga0059261_0645 -2.2 -5.4 DNA replication and repair protein RecR conserved
Ga0059261_2490 -2.1 -6.3 Small protein A (tmRNA-binding) compare
Ga0059261_0204 -2.0 -5.1 protein RecA compare
Ga0059261_0170 -2.0 -5.3 Uncharacterized protein involved in biosynthesis of c-type cytochromes compare
Ga0059261_3189 -2.0 -9.4 DNA replication and repair protein RecO compare
Ga0059261_0172 -1.9 -9.0 Cytochrome c biogenesis factor compare
Ga0059261_4187 -1.9 -9.8 acyl-CoA ligase (AMP-forming), exosortase A-associated compare
Ga0059261_2189 -1.9 -7.9 uncharacterized domain 1 compare
Ga0059261_2417 -1.9 -5.1 phytoene desaturase compare
Ga0059261_3502 -1.9 -3.7 Fatty acid desaturase compare
Ga0059261_0175 -1.8 -7.9 heme exporter protein CcmC compare
Ga0059261_3779 -1.8 -13.2 Excinuclease ABC subunit B conserved
Ga0059261_1545 -1.8 -5.9 Fe2+/Zn2+ uptake regulation proteins compare
Ga0059261_1369 -1.7 -10.7 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Ga0059261_0613 -1.7 -4.7 FecR family protein compare
Ga0059261_0674 -1.7 -12.8 excinuclease ABC, A subunit conserved
Ga0059261_0249 -1.7 -10.6 Superfamily I DNA and RNA helicases compare
Ga0059261_2285 -1.6 -2.8 Fe2+ transport system protein A compare
Ga0059261_3615 -1.6 -2.5 hypothetical protein compare
Ga0059261_0159 -1.5 -7.7 Transcriptional regulator compare
Ga0059261_0136 -1.4 -4.8 Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation compare
Ga0059261_3595 -1.4 -5.7 Site-specific recombinase XerD compare
Ga0059261_0657 -1.3 -2.1 Uncharacterized protein conserved in bacteria compare
Ga0059261_1312 -1.3 -5.3 amino acid/peptide transporter (Peptide:H+ symporter), bacterial compare
Ga0059261_4012 -1.3 -2.6 AMP nucleosidase compare
Ga0059261_0197 -1.3 -1.9 hypothetical protein compare
Ga0059261_0958 -1.3 -9.1 ATP-dependent DNA helicase RecG (EC 3.6.1.-) conserved
Ga0059261_1287 -1.3 -8.1 poly(R)-hydroxyalkanoic acid synthase, class I compare
Ga0059261_2286 -1.3 -5.8 Fe2+ transport system protein B compare
Ga0059261_3119 -1.3 -4.2 asparagine synthase (glutamine-hydrolyzing) compare
Ga0059261_3160 -1.3 -3.8 TolQ protein compare
Ga0059261_3159 -1.3 -4.3 TolR protein compare
Ga0059261_0171 -1.2 -1.5 Thiol-disulfide isomerase and thioredoxins compare
Ga0059261_1026 -1.2 -3.9 DNA repair protein RecN compare
Ga0059261_2181 -1.2 -9.5 penicillin-binding protein, 1A family compare
Ga0059261_2190 -1.2 -3.8 PTS IIA-like nitrogen-regulatory protein PtsN compare
Ga0059261_1869 -1.2 -5.0 ABC-type transport system involved in resistance to organic solvents, periplasmic component compare
Ga0059261_1870 -1.2 -5.0 ABC-type transport system involved in resistance to organic solvents, ATPase component compare
Ga0059261_1370 -1.2 -6.1 Signal transduction histidine kinase compare
Ga0059261_2005 -1.1 -4.1 protoheme IX farnesyltransferase compare
Ga0059261_1696 -1.1 -4.0 Pyridine nucleotide-disulphide oxidoreductase/Reductase C-terminal compare
Ga0059261_3368 -1.1 -4.9 Predicted transcriptional regulator compare
Ga0059261_2119 -1.1 -4.4 Flagellar motor protein compare
Ga0059261_1909 -1.1 -5.8 MAF protein compare
Ga0059261_1451 -1.1 -3.7 3-oxoacyl-[acyl-carrier-protein] reductase (EC 1.1.1.100) compare
Ga0059261_3101 -1.1 -3.2 nucleotide sugar dehydrogenase compare
Ga0059261_2700 -1.1 -7.6 Putative Zn-dependent protease, contains TPR repeats compare
Ga0059261_1871 -1.0 -7.2 ABC transport permease subunit compare
Ga0059261_1846 -1.0 -6.3 Xaa-Pro aminopeptidase compare
Ga0059261_4055 -1.0 -7.0 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) compare
Ga0059261_2418 -1.0 -3.9 lycopene cyclase compare
Ga0059261_0163 -1.0 -2.8 Major Facilitator Superfamily compare
Ga0059261_0758 -1.0 -8.3 ATPase related to the helicase subunit of the Holliday junction resolvase compare
Ga0059261_0131 -1.0 -4.5 hypothetical protein compare
Ga0059261_3196 -1.0 -2.3 Transcriptional regulator compare
Ga0059261_3211 -0.9 -5.9 hypothetical protein compare
Ga0059261_0650 -0.9 -1.8 Negative regulator of beta-lactamase expression compare
Ga0059261_1382 -0.9 -5.0 periplasmic serine protease, Do/DeqQ family compare
Ga0059261_0037 -0.9 -6.3 hypothetical protein compare
Ga0059261_4056 -0.9 -6.6 Acetyl/propionyl-CoA carboxylase, alpha subunit compare
Ga0059261_0751 -0.9 -6.9 DNA repair protein RadA conserved
Ga0059261_1368 -0.9 -2.9 hypothetical protein compare
Ga0059261_2764 -0.9 -3.7 Site-specific recombinase XerD compare
Ga0059261_2034 -0.9 -6.9 Uncharacterized protein conserved in bacteria compare
Ga0059261_3191 -0.9 -4.8 Glycosyltransferases involved in cell wall biogenesis compare
Ga0059261_2444 -0.9 -4.2 5-aminolevulinic acid synthase compare
Ga0059261_3103 -0.9 -3.1 Glycosyltransferase compare
Ga0059261_3979 -0.9 -2.9 elongation factor 4 compare
Ga0059261_3156 -0.9 -3.7 peptidoglycan-associated lipoprotein compare
Ga0059261_0951 -0.9 -4.1 hypothetical protein compare
Ga0059261_3114 -0.9 -5.1 hypothetical protein compare
Ga0059261_3437 -0.8 -1.7 hypothetical protein compare
Ga0059261_0664 -0.8 -2.0 pseudouridine synthase, RluA family compare
Ga0059261_2120 -0.8 -2.3 hypothetical protein compare
Ga0059261_1360 -0.8 -5.5 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase compare
Ga0059261_3130 -0.8 -4.8 Lipid A core - O-antigen ligase and related enzymes compare
Ga0059261_3157 -0.8 -6.2 tol-pal system beta propeller repeat protein TolB compare
Ga0059261_2498 -0.8 -3.2 hypothetical protein compare
Ga0059261_2244 -0.8 -5.8 DNA polymerase I (EC 2.7.7.7) compare
Ga0059261_1929 -0.8 -3.3 Putative transmembrane protein (Alph_Pro_TM) compare
Ga0059261_0991 -0.7 -4.9 Methionine synthase I (cobalamin-dependent), methyltransferase domain compare
Ga0059261_2121 -0.7 -5.4 hypothetical protein compare
Ga0059261_2021 -0.7 -5.7 Protein of unknown function (DUF2029) compare
Ga0059261_3190 -0.7 -5.8 3-isopropylmalate dehydrogenase compare
Ga0059261_1928 -0.7 -2.9 Predicted permeases compare
Ga0059261_4054 -0.7 -2.2 Uncharacterized protein conserved in bacteria compare
Ga0059261_2145 -0.7 -3.4 ribosome-binding factor A compare
Ga0059261_0990 -0.7 -6.1 methionine synthase (B12-dependent) (EC 2.1.1.13) compare
Ga0059261_3097 -0.7 -2.9 Calcineurin-like phosphoesterase compare
Ga0059261_1017 -0.7 -3.7 tRNA-guanine transglycosylase compare
Ga0059261_0245 -0.7 -1.1 pseudouridine synthase compare
Ga0059261_0620 -0.7 -5.8 Outer membrane cobalamin receptor protein compare
Ga0059261_1868 -0.7 -1.8 ABC-type uncharacterized transport system, auxiliary component compare
Ga0059261_0950 -0.7 -2.2 Uncharacterized protein conserved in bacteria (DUF2336) compare
Ga0059261_0622 -0.7 -4.0 ABC-type Fe3+-hydroxamate transport system, periplasmic component compare
Ga0059261_2213 -0.7 -2.9 Domain of unknown function (DUF3576) compare
Ga0059261_3127 -0.7 -3.5 hypothetical protein compare
Ga0059261_3129 -0.7 -4.3 SLBB domain/Polysaccharide biosynthesis/export protein compare
Ga0059261_2514 -0.6 -5.4 phosphoenolpyruvate-protein phosphotransferase compare
Ga0059261_3271 -0.6 -1.0 arsenate reductase (glutaredoxin) compare
Ga0059261_2128 -0.6 -2.7 Predicted membrane protein compare
Ga0059261_2118 -0.6 -2.9 flagellar motor stator protein MotA compare
Ga0059261_0156 -0.6 -4.0 alkyl hydroperoxide reductase subunit F conserved
Ga0059261_2101 -0.6 -2.5 Putative transposase of IS4/5 family (DUF4096) compare
Ga0059261_2415 -0.6 -5.0 Phytoene/squalene synthetase compare
Ga0059261_2403 -0.6 -3.5 hypothetical protein compare
Ga0059261_2050 -0.6 -2.5 hypothetical protein compare
Ga0059261_3219 -0.6 -3.1 ubiquinol-cytochrome c reductase, iron-sulfur subunit compare
Ga0059261_0290 -0.6 -2.7 3-dehydroquinate dehydratase (EC 4.2.1.10) compare
Ga0059261_3490 -0.6 -3.1 Response regulator receiver domain/Sigma-70, region 4 compare
Ga0059261_0790 -0.6 -1.0 putative membrane protein insertion efficiency factor compare
Ga0059261_3939 -0.6 -2.9 transcriptional regulator, TetR family compare
Ga0059261_1912 -0.6 -2.2 Nitroreductase compare
Ga0059261_1258 -0.6 -5.4 TonB-dependent siderophore receptor compare
Ga0059261_3128 -0.6 -4.6 capsular exopolysaccharide family compare
Ga0059261_1349 -0.6 -1.9 hypothetical protein compare
Ga0059261_3488 -0.6 -1.0 Histidine kinase/HAMP domain compare
Ga0059261_0153 -0.6 -2.3 Serine acetyltransferase compare
Ga0059261_2684 -0.6 -1.8 hypothetical protein compare
Ga0059261_4025 -0.6 -1.4 Nucleotidyl transferase compare
Ga0059261_2243 -0.6 -1.5 Membrane protein involved in the export of O-antigen and teichoic acid compare
Ga0059261_3671 -0.5 -0.8 Citrate lyase beta subunit compare
Ga0059261_0623 -0.5 -2.3 ABC-type Fe3+-siderophore transport system, permease component compare
Ga0059261_0255 -0.5 -1.5 SurA N-terminal domain/PPIC-type PPIASE domain compare
Ga0059261_2117 -0.5 -4.4 Transposase and inactivated derivatives compare
Ga0059261_2179 -0.5 -3.8 Phospholipid N-methyltransferase compare
Ga0059261_1190 -0.5 -2.8 hypothetical protein compare
Ga0059261_3359 -0.5 -1.6 Zn-dependent hydrolases, including glyoxylases compare
Ga0059261_3938 -0.5 -3.7 Imidazolonepropionase and related amidohydrolases compare
Ga0059261_2125 -0.5 -3.4 ATP-dependent helicase HrpB compare
Ga0059261_3430 -0.5 -1.6 NADH:ubiquinone oxidoreductase 17.2 kD subunit compare
Ga0059261_1293 -0.5 -4.2 (p)ppGpp synthetase, RelA/SpoT family compare
Ga0059261_4215 -0.5 -3.3 Predicted N-formylglutamate amidohydrolase compare
Ga0059261_0964 -0.5 -1.9 Superfamily II DNA and RNA helicases compare
Ga0059261_3506 -0.5 -0.8 Predicted permeases compare
Ga0059261_3195 -0.5 -3.4 Uncharacterized protein affecting Mg2+/Co2+ transport compare
Ga0059261_0321 -0.5 -1.2 hypothetical protein compare
Ga0059261_0823 -0.5 -3.8 hypothetical protein compare
Ga0059261_0770 -0.5 -1.2 hypothetical protein compare
Ga0059261_3255 -0.5 -3.4 hypothetical protein compare
Ga0059261_3945 -0.5 -3.6 type II secretion system protein D compare
Ga0059261_2774 -0.5 -1.4 Transcription elongation factor compare
Ga0059261_0267 -0.5 -1.4 Predicted membrane protein compare
Ga0059261_3492 -0.5 -3.0 RNA polymerase sigma factor, sigma-70 family compare
Ga0059261_3365 -0.5 -2.0 hypothetical protein compare
Ga0059261_2371 -0.5 -2.4 hypothetical protein compare
Ga0059261_2948 -0.5 -2.1 Putative copper export protein compare
Ga0059261_1472 -0.5 -1.1 hypothetical protein compare
Ga0059261_1253 -0.5 -1.3 Uncharacterized protein conserved in bacteria compare
Ga0059261_1213 -0.5 -1.6 hypothetical protein compare
Ga0059261_3755 -0.5 -1.3 Protein of unknown function (DUF2798) compare
Ga0059261_3637 -0.5 -1.2 Uncharacterized protein conserved in bacteria compare
Ga0059261_0155 -0.5 -3.7 peroxiredoxin compare
Ga0059261_2540 -0.5 -1.2 Uncharacterized protein conserved in bacteria compare
Ga0059261_2116 -0.5 -4.1 Integrase compare
Ga0059261_1300 -0.5 -1.6 hypothetical protein compare
Ga0059261_1257 -0.5 -3.0 Uncharacterized iron-regulated protein compare
Ga0059261_2396 -0.5 -2.3 hypothetical protein compare
Ga0059261_1032 -0.5 -2.1 protein CrcB compare
Ga0059261_1339 -0.5 -0.9 hypothetical protein compare
Ga0059261_2013 -0.5 -3.8 signal peptidase I, bacterial type compare
Ga0059261_2191 -0.5 -2.9 ribosomal subunit interface protein compare
Ga0059261_3347 -0.5 -1.9 Domain of unknown function DUF87 compare
Ga0059261_0918 -0.5 -2.3 Phosphotransferase system, mannose/fructose-specific component IIA compare
Ga0059261_2277 -0.5 -1.0 hypothetical protein compare
Ga0059261_1217 -0.5 -1.6 MobA/MobL family compare
Ga0059261_0012 -0.5 -2.3 Protein of unknown function (DUF1469) compare
Ga0059261_3948 -0.5 -1.4 type II secretion system protein H compare
Ga0059261_2547 -0.5 -0.8 tRNA compare
Ga0059261_3064 -0.5 -1.7 hypothetical protein compare
Ga0059261_0624 -0.5 -2.9 ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components compare
Ga0059261_1911 -0.4 -0.9 Thioredoxin-like proteins and domains compare
Ga0059261_2398 -0.4 -2.7 hypothetical protein compare
Ga0059261_4052 -0.4 -3.8 Acyl-CoA dehydrogenases compare
Ga0059261_2313 -0.4 -2.3 condensin subunit Smc compare
Ga0059261_2471 -0.4 -1.0 hypothetical protein compare
Ga0059261_1605 -0.4 -2.7 transcriptional regulator, TetR family compare
Ga0059261_0448 -0.4 -1.1 hypothetical protein compare
Ga0059261_0067 -0.4 -2.8 acetolactate synthase, small subunit (EC 2.2.1.6) compare
Ga0059261_2124 -0.4 -2.8 hypothetical protein compare
Ga0059261_0069 -0.4 -2.2 tRNA dimethylallyltransferase compare
Ga0059261_0960 -0.4 -3.9 transcription-repair coupling factor (mfd) compare
Ga0059261_1077 -0.4 -2.2 STAS domain compare
Ga0059261_3207 -0.4 -2.1 Disulfide bond chaperones of the HSP33 family compare
Ga0059261_1908 -0.4 -1.6 Ribonuclease E/G family compare
Ga0059261_0526 -0.4 -2.2 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases compare
Ga0059261_3026 -0.4 -1.4 Cation efflux family compare
Ga0059261_1507 -0.4 -1.2 deoxycytidine triphosphate deaminase compare
Ga0059261_3925 -0.4 -2.2 Transcriptional regulators compare
Ga0059261_3946 -0.4 -2.4 Type IV pilus biogenesis/PDZ domain compare
Ga0059261_2756 -0.4 -2.4 Predicted endonuclease distantly related to archaeal Holliday junction resolvase compare
Ga0059261_3872 -0.4 -1.7 Outer membrane protein compare
Ga0059261_3941 -0.4 -3.8 Predicted phosphatase compare


Specific Phenotypes

For 9 genes in this experiment

For stress methylglyoxal in Sphingomonas koreensis DSMZ 15582

For stress methylglyoxal across organisms