Experiment set4IT023 for Methanococcus maripaludis S2

Compare to:

H2 deepwell vitamin and casamino acid FREE

200 most important genes:

  gene name fitness t score description  
MMP_RS01455 -10.1 -4.8 nickel pincer cofactor biosynthesis protein LarC compare
MMP_RS05500 -9.5 -5.6 2-isopropylmalate synthase compare
MMP_RS06375 -9.5 -4.9 ATP-dependent sacrificial sulfur transferase LarE compare
MMP_RS04615 -9.4 -3.2 PDGLE domain-containing protein compare
MMP_RS06370 -8.7 -3.6 biotin synthase BioB compare
MMP_RS07845 -8.5 -2.5 LL-diaminopimelate aminotransferase compare
MMP_RS03450 -8.1 -2.4 glycine synthesis protein GlyXS (from data) compare
MMP_RS07600 -7.5 -2.5 Ni-sirohydrochlorin a c-diamide synthase compare
MMP_RS08095 -7.5 -6.1 dethiobiotin synthase compare
MMP_RS06270 -7.4 -4.3 TIGR00300 family protein compare
MMP_RS05425 -7.1 -3.8 monovalent cation/H+ antiporter complex subunit F compare
MMP_RS04500 -6.9 -16.0 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
MMP_RS07345 -6.9 -4.2 glycine synthesis protein GlyXL (from data) compare
MMP_RS07185 -6.7 -12.9 pyridoxal phosphate-dependent aminotransferase compare
MMP_RS06400 -6.6 -1.9 4Fe-4S binding protein compare
MMP_RS04215 -6.6 -7.6 nickel pincer cofactor biosynthesis protein LarB compare
MMP_RS05930 -6.5 -2.5 3-isopropylmalate dehydratase large subunit compare
MMP_RS04605 -6.5 -4.2 cobalt ECF transporter T component CbiQ compare
MMP_RS09020 -6.5 -1.9 hypothetical protein compare
MMP_RS03035 -6.4 -3.0 4-hydroxy-tetrahydrodipicolinate synthase compare
MMP_RS04620 -6.3 -11.6 cobalt transporter CbiM compare
MMP_RS08105 -6.3 -6.7 6-carboxyhexanoate--CoA ligase compare
MMP_RS08435 -6.3 -2.1 Era-like GTP-binding protein compare
MMP_RS02240 -6.3 -3.4 methanogenesis marker 7 protein compare
MMP_RS06730 -6.3 -2.1 phosphopantothenate/pantothenate synthetase compare
MMP_RS04685 -6.3 -2.8 DUF126 domain-containing protein compare
MMP_RS02135 -6.3 -4.9 DUF5612 domain-containing protein compare
MMP_RS06625 -6.2 -2.1 DNA primase compare
MMP_RS03700 -6.1 -9.3 sodium:proton antiporter compare
MMP_RS08100 -6.1 -6.0 8-amino-7-oxononanoate synthase compare
MMP_RS08790 -5.9 -2.0 translation initiation factor IF-2 subunit alpha compare
MMP_RS05845 -5.9 -2.0 tRNA-intron lyase compare
MMP_RS07645 -5.9 -5.0 aldehyde dehydrogenase family protein compare
MMP_RS02875 -5.9 -9.4 chorismate pyruvate-lyase family protein compare
MMP_RS06975 -5.8 -2.2 sulfide-dependent adenosine diphosphate thiazole synthase compare
MMP_RS03435 -5.8 -1.9 ketol-acid reductoisomerase compare
MMP_RS01175 -5.7 -3.8 triphosphoribosyl-dephospho-CoA synthase compare
MMP_RS03445 -5.7 -1.0 methanogenesis marker 17 protein compare
MMP_RS01020 -5.7 -1.0 3 4-dihydroxy-2-butanone-4-phosphate synthase compare
MMP_RS01380 -5.5 -5.5 PHP domain-containing protein compare
MMP_RS07355 -5.5 -0.9 transcription factor S compare
MMP_RS08650 -5.3 -2.7 glutamine--fructose-6-phosphate transaminase (isomerizing) compare
MMP_RS01890 -5.3 -4.8 nucleotide sugar dehydrogenase compare
MMP_RS03960 -5.3 -0.9 hypothetical protein compare
MMP_RS02280 -5.3 -0.9 DUF211 domain-containing protein compare
MMP_RS06895 -5.3 -2.1 selenocysteine-specific translation elongation factor compare
MMP_RS08460 -5.3 -2.2 proteasome-activating nucleotidase compare
MMP_RS03015 -5.3 -8.4 GTP 3' 8-cyclase MoaA compare
MMP_RS03315 -5.3 -1.5 ferrous iron transport protein A compare
MMP_RS07730 -5.2 -2.0 pyruvate synthase subunit beta compare
MMP_RS04775 -5.2 -3.6 adenosylhomocysteinase compare
MMP_RS07390 -5.2 -2.1 cell division protein FtsZ compare
MMP_RS07075 -5.1 -3.8 phosphomannomutase/phosphoglucomutase compare
MMP_RS04790 -5.1 -9.2 4-hydroxy-tetrahydrodipicolinate reductase compare
MMP_RS06340 -5.1 -7.3 phosphoadenosine phosphosulfate reductase family protein compare
MMP_RS05265 -5.1 -2.1 2-isopropylmalate synthase compare
MMP_RS06475 -5.0 -5.7 FAD-dependent oxidoreductase compare
MMP_RS01925 -5.0 -12.1 DUF1616 domain-containing protein compare
MMP_RS01610 -5.0 -3.2 hypothetical protein compare
MMP_RS03580 -5.0 -3.4 signal recognition particle-docking protein FtsY compare
MMP_RS01005 -4.8 -1.1 riboflavin synthase compare
MMP_RS06130 -4.8 -4.3 peptidylprolyl isomerase compare
MMP_RS04720 -4.8 -3.3 DedA family protein compare
MMP_RS03600 -4.8 -2.5 triose-phosphate isomerase compare
MMP_RS01875 -4.8 -11.7 N-acetyltransferase compare
MMP_RS08715 -4.8 -2.2 formylmethanofuran dehydrogenase subunit B compare
MMP_RS02145 -4.8 -9.1 winged helix-turn-helix transcriptional regulator compare
MMP_RS01900 -4.7 -21.2 hypothetical protein compare
MMP_RS06355 -4.7 -2.5 molybdenum cofactor biosynthesis protein MoaE compare
MMP_RS08210 -4.7 -2.4 phosphatidylglycerophosphatase A compare
MMP_RS02900 -4.7 -0.8 imidazoleglycerol-phosphate dehydratase HisB compare
MMP_RS05555 -4.7 -1.1 DUF4040 domain-containing protein compare
MMP_RS01325 -4.7 -2.5 dihydroneopterin aldolase family protein compare
MMP_RS08355 -4.6 -5.2 Na(+)/H(+) antiporter subunit B compare
MMP_RS07195 -4.6 -9.3 M20 family metallo-hydrolase compare
MMP_RS08720 -4.6 -1.6 4Fe-4S binding protein compare
MMP_RS01975 -4.6 -15.1 hypothetical protein compare
MMP_RS07555 -4.6 -0.8 monovalent cation/H+ antiporter subunit E compare
MMP_RS02345 -4.6 -4.0 GTP-dependent dephospho-CoA kinase family protein compare
MMP_RS01905 -4.6 -19.3 glycosyltransferase compare
MMP_RS01755 -4.5 -1.1 DUF2097 domain-containing protein compare
MMP_RS07750 -4.5 -4.8 DUF357 domain-containing protein compare
MMP_RS03400 -4.5 -2.8 archease compare
MMP_RS00685 -4.5 -3.8 2-phospho-L-lactate guanylyltransferase compare
MMP_RS00300 -4.5 -0.7 6 7-dimethyl-8-ribityllumazine synthase compare
MMP_RS05515 -4.4 -6.5 cyclic pyranopterin monophosphate synthase MoaC compare
MMP_RS03025 -4.4 -6.3 molybdenum cofactor guanylyltransferase compare
MMP_RS01880 -4.4 -7.3 DegT/DnrJ/EryC1/StrS family aminotransferase compare
MMP_RS08635 -4.4 -1.8 UbiA family prenyltransferase compare
MMP_RS06295 -4.4 -7.3 methanogenesis marker 14 protein compare
MMP_RS05550 -4.4 -0.7 cation:proton antiporter compare
MMP_RS06230 -4.4 -2.6 helix-turn-helix domain-containing protein compare
MMP_RS03475 -4.4 -0.7 hypothetical protein compare
MMP_RS07635 -4.3 -6.0 MogA/MoaB family molybdenum cofactor biosynthesis protein compare
MMP_RS06285 -4.3 -2.5 precorrin-6Y C5 15-methyltransferase (decarboxylating) subunit CbiT compare
MMP_RS05920 -4.3 -0.7 50S ribosomal protein L37e compare
MMP_RS07005 -4.3 -0.7 4Fe-4S binding protein compare
MMP_RS06105 -4.2 -9.3 hydrogenase maturation peptidase HycI compare
MMP_RS05345 -4.2 -9.5 hypothetical protein compare
MMP_RS05250 -4.2 -1.4 NFYB/HAP3 family transcription factor subunit compare
MMP_RS00305 -4.2 -2.2 phosphoribosyl-ATP diphosphatase compare
MMP_RS06670 -4.1 -5.8 glucose-6-phosphate isomerase compare
MMP_RS08745 -4.1 -6.7 CDP-2 3-bis-(O-geranylgeranyl)-sn-glycerol synthase compare
MMP_RS07435 -4.0 -2.3 GMP synthase subunit A compare
MMP_RS06315 -4.0 -0.9 cobalt-precorrin-7 (C(5))-methyltransferase compare
MMP_RS00810 -4.0 -8.2 topoisomerase DNA-binding C4 zinc finger domain-containing protein compare
MMP_RS01700 -4.0 -0.9 dihydroxy-acid dehydratase compare
MMP_RS07630 -4.0 -1.6 ATP-binding cassette domain-containing protein compare
MMP_RS01225 -3.9 -5.7 DUF5379 domain-containing protein compare
MMP_RS03390 -3.9 -7.4 malate dehydrogenase compare
MMP_RS07955 -3.9 -5.4 FumA C-terminus/TtdB family hydratase beta subunit compare
MMP_RS00895 -3.9 -3.2 hypothetical protein compare
MMP_RS06885 -3.9 -3.0 50S ribosome-binding GTPase compare
MMP_RS06020 -3.9 -4.9 archaeoflavoprotein AfpA compare
MMP_RS06350 -3.9 -6.3 HesA/MoeB/ThiF family protein compare
MMP_RS00110 -3.8 -2.7 hypothetical protein compare
MMP_RS00130 -3.8 -1.3 nickel-responsive transcriptional regulator NikR compare
MMP_RS02340 -3.8 -2.0 DNA-directed RNA polymerase subunit E'' compare
MMP_RS02195 -3.8 -3.8 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-methylthiotransferase compare
MMP_RS07710 -3.8 -8.3 cell division protein FtsZ compare
MMP_RS08820 -3.8 -5.1 hypothetical protein compare
MMP_RS08300 -3.7 -1.1 metal-sulfur cluster assembly factor compare
MMP_RS07380 -3.7 -2.4 transcription elongation factor Spt5 compare
MMP_RS06930 -3.7 -10.5 MBL fold metallo-hydrolase compare
MMP_RS04710 -3.7 -1.7 hypothetical protein compare
MMP_RS01800 -3.7 -4.5 TIGR00303 family protein compare
MMP_RS01500 -3.7 -2.0 CBS domain-containing protein compare
MMP_RS04890 -3.6 -0.9 adenylyltransferase/cytidyltransferase family protein compare
MMP_RS01795 -3.6 -1.7 methanogenesis marker 6 protein compare
MMP_RS07580 -3.6 -3.2 DUF356 domain-containing protein compare
MMP_RS01220 -3.6 -6.5 hypothetical protein compare
MMP_RS05925 -3.6 -3.2 small nuclear ribonucleoprotein compare
MMP_RS07575 -3.6 -3.7 RNA ligase partner protein compare
MMP_RS01910 -3.5 -11.1 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
MMP_RS00750 -3.5 -2.7 fumarate hydratase compare
MMP_RS06925 -3.5 -2.3 ribonuclease VapC4 compare
MMP_RS01545 -3.4 -1.1 CBS domain-containing protein compare
MMP_RS08350 -3.4 -1.0 hypothetical protein compare
MMP_RS04780 -3.4 -2.9 ribonuclease P compare
MMP_RS07200 -3.4 -5.7 [5-(aminomethyl)furan-3-yl]methyl phosphate kinase compare
MMP_RS04090 -3.4 -3.0 hypothetical protein compare
MMP_RS01885 -3.4 -6.2 Gfo/Idh/MocA family oxidoreductase compare
MMP_RS06120 -3.3 -2.1 UPF0147 family protein compare
MMP_RS03640 -3.3 -4.1 archaeal proteasome endopeptidase complex subunit beta compare
MMP_RS05950 -3.3 -10.6 nickel-dependent hydrogenase large subunit compare
MMP_RS03205 -3.3 -1.3 peptidyl-tRNA hydrolase Pth2 compare
MMP_RS08330 -3.3 -3.6 NADH-quinone oxidoreductase subunit H compare
MMP_RS08335 -3.2 -6.8 NADH-quinone oxidoreductase subunit B family protein compare
MMP_RS05640 -3.2 -5.8 UTP--glucose-1-phosphate uridylyltransferase GalU compare
MMP_RS02355 -3.2 -2.8 30S ribosomal protein S27ae compare
MMP_RS07735 -3.2 -0.7 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha compare
MMP_RS07755 -3.2 -1.0 DUF555 domain-containing protein compare
MMP_RS01970 -3.2 -12.1 TIGR04279 domain-containing protein compare
MMP_RS01915 -3.0 -14.4 DUF354 domain-containing protein compare
MMP_RS07605 -3.0 -2.9 diadenylate cyclase compare
MMP_RS06725 -3.0 -8.1 hypothetical protein compare
MMP_RS01955 -3.0 -3.0 hypothetical protein compare
MMP_RS01265 -3.0 -2.0 hypothetical protein compare
MMP_RS08345 -2.8 -7.9 4Fe-4S binding protein compare
MMP_RS03145 -2.8 -6.7 fibrillarin-like rRNA/tRNA 2'-O-methyltransferase compare
MMP_RS03140 -2.7 -9.8 hypothetical protein compare
MMP_RS00515 -2.7 -0.9 DUF655 domain-containing protein compare
MMP_RS07625 -2.7 -3.5 cobalt ECF transporter T component CbiQ compare
MMP_RS00695 -2.7 -0.9 biotin--[acetyl-CoA-carboxylase] ligase compare
MMP_RS06940 -2.7 -3.3 polyprenyl diphosphate synthase compare
MMP_RS03095 -2.7 -6.3 diphthine synthase compare
MMP_RS08360 -2.7 -4.2 hypothetical protein compare
MMP_RS01725 -2.6 -4.6 class I SAM-dependent methyltransferase family protein compare
MMP_RS08365 -2.6 -3.9 energy conserving hydrogenase EhbF compare
MMP_RS01665 -2.6 -3.2 DUF2111 domain-containing protein compare
MMP_RS01830 -2.6 -1.7 tRNA-Val compare
MMP_RS00520 -2.6 -1.8 RNA polymerase Rpb4 family protein compare
MMP_RS07875 -2.6 -4.8 hypothetical protein compare
MMP_RS08440 -2.6 -2.6 cell division protein SepF compare
MMP_RS02800 -2.5 -4.6 nucleotidyltransferase domain-containing protein compare
MMP_RS04875 -2.5 -4.9 energy-converting hydrogenase B subunit P compare
MMP_RS03420 -2.5 -3.1 acetolactate synthase small subunit compare
MMP_RS01895 -2.4 -12.1 flippase compare
MMP_RS06630 -2.4 -0.9 UPF0058 family protein compare
MMP_RS03250 -2.3 -3.6 MJ1244 family protein compare
MMP_RS07725 -2.3 -3.0 4Fe-4S dicluster domain-containing protein compare
MMP_RS04585 -2.3 -8.2 AIR synthase related protein compare
MMP_RS01385 -2.2 -0.6 imidazole glycerol phosphate synthase subunit HisH compare
MMP_RS06980 -2.2 -7.8 tRNA 2-thiocytidine biosynthesis TtcA family protein compare
MMP_RS08840 -2.2 -7.8 class I SAM-dependent methyltransferase compare
MMP_RS06855 -2.2 -7.1 hypothetical protein compare
MMP_RS02190 -2.2 -2.7 sulfopyruvate decarboxylase subunit alpha compare
MMP_RS01920 -2.2 -11.1 glycosyltransferase family 2 protein compare
MMP_RS00115 -2.2 -10.7 radical SAM protein compare
MMP_RS01840 -2.1 -5.6 TIGR00289 family protein compare
MMP_RS05460 -2.1 -6.9 YcaO-related McrA-glycine thioamidation protein compare
MMP_RS07545 -2.1 -1.0 HTH domain-containing protein compare
MMP_RS02010 -2.1 -6.9 PHP domain-containing protein compare
MMP_RS06215 -2.1 -2.6 30S ribosomal protein S6e compare
MMP_RS04785 -2.0 -8.5 hypothetical protein compare
MMP_RS01945 -2.0 -6.8 DUF4350 domain-containing protein compare
MMP_RS08600 -2.0 -1.7 flagellar protein D compare
MMP_RS00735 -2.0 -3.5 5 10-methenyltetrahydromethanopterin hydrogenase compare
MMP_RS05540 -2.0 -2.8 hypothetical protein compare
MMP_RS07425 -2.0 -4.1 GTP-binding protein compare


Specific Phenotypes

None in this experiment

For Methanococcus maripaludis S2 in nutrient t2 experiments

For nutrient t2 Sodium acetate across organisms