Experiment set4IT023 for Pantoea sp. MT58

Compare to:

nitrogen source Sodium nitrate 20mM

200 most important genes:

  gene name fitness t score description  
IAI47_12645 -5.3 -7.2 porin OmpA compare
IAI47_18530 -4.8 -4.7 thioredoxin TrxA compare
IAI47_07165 -4.7 -3.2 exodeoxyribonuclease I compare
IAI47_13195 -4.4 -6.7 DNA starvation/stationary phase protection protein Dps compare
IAI47_13690 -4.3 -1.6 cell envelope integrity protein TolA compare
IAI47_01365 -4.3 -3.0 inorganic phosphate transporter PitA compare
IAI47_13695 -4.3 -1.6 colicin uptake protein TolR compare
IAI47_04895 -4.2 -6.3 pyridoxine 5'-phosphate synthase compare
IAI47_16015 -4.0 -8.1 3-isopropylmalate dehydratase small subunit compare
IAI47_21765 -3.9 -2.7 YoeB-YefM toxin-antitoxin system antitoxin YefM compare
IAI47_05275 -3.9 -7.0 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
IAI47_04930 -3.7 -22.5 phosphoribosylformylglycinamidine synthase compare
IAI47_11190 -3.6 -12.6 nitrate- and nitrite sensing domain-containing protein conserved
IAI47_04300 -3.6 -9.0 recombinase RecA compare
IAI47_00895 -3.6 -21.1 phosphoenolpyruvate carboxylase compare
IAI47_09805 -3.5 -15.6 bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG compare
IAI47_06275 -3.5 -18.9 amidophosphoribosyltransferase compare
IAI47_05180 -3.5 -16.0 phosphoribosylformylglycinamidine cyclo-ligase compare
IAI47_03860 -3.4 -14.4 diaminopimelate decarboxylase compare
IAI47_13740 -3.4 -2.3 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase compare
IAI47_00780 -3.3 -4.6 6-phosphofructokinase compare
IAI47_16215 -3.3 -18.7 bifunctional aspartate kinase/homoserine dehydrogenase I compare
IAI47_01040 -3.3 -11.5 threonine ammonia-lyase, biosynthetic compare
IAI47_13180 -3.3 -9.8 manganese-binding transcriptional regulator MntR compare
IAI47_09180 -3.3 -13.9 anthranilate phosphoribosyltransferase compare
IAI47_13685 -3.3 -4.1 Tol-Pal system protein TolB compare
IAI47_05440 -3.3 -13.8 cysteine synthase A compare
IAI47_00300 -3.2 -2.2 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
IAI47_18045 -3.2 -11.6 phosphoribosylamine--glycine ligase compare
IAI47_11170 -3.2 -16.4 nitrite reductase small subunit NirD conserved
IAI47_17185 -3.2 -10.2 RNA polymerase factor sigma-54 compare
IAI47_17220 -3.1 -22.5 glutamate synthase large subunit compare
IAI47_11160 -3.1 -9.6 uroporphyrinogen-III C-methyltransferase compare
IAI47_04190 -3.1 -8.1 adenylyl-sulfate kinase compare
IAI47_04120 -3.1 -17.4 GTP diphosphokinase compare
IAI47_10520 -3.1 -5.1 pyridoxamine 5'-phosphate oxidase compare
IAI47_12915 -3.0 -12.6 leucine-responsive transcriptional regulator Lrp compare
IAI47_09175 -3.0 -14.5 bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF compare
IAI47_13770 -3.0 -14.7 citrate synthase compare
IAI47_15115 -3.0 -12.5 glutamate-5-semialdehyde dehydrogenase compare
IAI47_18040 -3.0 -17.0 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
IAI47_16830 -3.0 -13.1 ornithine carbamoyltransferase compare
IAI47_17225 -3.0 -17.3 sulfite reductase subunit alpha compare
IAI47_13745 -3.0 -6.2 2-oxoglutarate dehydrogenase E1 component compare
IAI47_14355 -3.0 -10.9 5-(carboxyamino)imidazole ribonucleotide synthase compare
IAI47_00450 -3.0 -12.9 nitrogen regulation protein NR(I) compare
IAI47_00460 -2.9 -3.5 glutamate--ammonia ligase compare
IAI47_16350 -2.9 -11.1 phosphoserine phosphatase compare
IAI47_07070 -2.9 -6.9 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
IAI47_07080 -2.9 -10.7 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
IAI47_14350 -2.9 -7.6 5-(carboxyamino)imidazole ribonucleotide mutase compare
IAI47_01050 -2.9 -16.6 ketol-acid reductoisomerase compare
IAI47_21655 -2.9 -1.5 LacI family DNA-binding transcriptional regulator compare
IAI47_04160 -2.9 -12.8 phosphoadenylyl-sulfate reductase compare
IAI47_07075 -2.8 -10.3 imidazole glycerol phosphate synthase subunit HisH compare
IAI47_01035 -2.8 -16.2 dihydroxy-acid dehydratase compare
IAI47_13900 -2.8 -15.9 asparagine synthase B compare
IAI47_09190 -2.8 -13.9 anthranilate synthase component 1 compare
IAI47_15635 -2.8 -3.0 RNA polymerase-binding protein DksA compare
IAI47_07085 -2.8 -14.7 histidinol-phosphate transaminase compare
IAI47_09185 -2.8 -5.9 glutamine amidotransferase compare
IAI47_00920 -2.8 -13.6 argininosuccinate lyase compare
IAI47_16120 -2.8 -11.3 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
IAI47_00880 -2.8 -14.2 cystathionine gamma-synthase compare
IAI47_04410 -2.7 -14.8 bifunctional chorismate mutase/prephenate dehydratase compare
IAI47_11185 -2.7 -11.2 ABC transporter substrate-binding protein conserved
IAI47_16000 -2.7 -15.7 2-isopropylmalate synthase compare
IAI47_11180 -2.7 -6.8 nitrate ABC transporter permease compare
IAI47_03975 -2.7 -13.5 amino-acid N-acetyltransferase compare
IAI47_16205 -2.7 -7.8 threonine synthase compare
IAI47_16010 -2.7 -13.0 3-isopropylmalate dehydratase large subunit compare
IAI47_06235 -2.7 -7.3 4-phosphoerythronate dehydrogenase PdxB compare
IAI47_17035 -2.7 -3.3 ribosome maturation factor RimP compare
IAI47_00905 -2.7 -10.7 N-acetyl-gamma-glutamyl-phosphate reductase compare
IAI47_09170 -2.6 -13.4 tryptophan synthase subunit beta compare
IAI47_04175 -2.6 -10.7 uroporphyrinogen-III C-methyltransferase compare
IAI47_04155 -2.6 -13.2 assimilatory sulfite reductase (NADPH) hemoprotein subunit compare
IAI47_00875 -2.6 -2.2 met regulon transcriptional regulator MetJ compare
IAI47_08440 -2.6 -2.9 crossover junction endodeoxyribonuclease RuvC compare
IAI47_03725 -2.6 -9.2 phosphoglycerate dehydrogenase compare
IAI47_07065 -2.5 -10.9 imidazole glycerol phosphate synthase subunit HisF compare
IAI47_09165 -2.5 -10.3 tryptophan synthase subunit alpha compare
IAI47_00455 -2.5 -10.6 nitrogen regulation protein NR(II) compare
IAI47_15120 -2.5 -9.2 glutamate 5-kinase compare
IAI47_12865 -2.5 -10.6 3-phosphoserine/phosphohydroxythreonine transaminase compare
IAI47_16080 -2.5 -8.6 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
IAI47_12705 -2.5 -10.7 quinone-dependent dihydroorotate dehydrogenase compare
IAI47_04150 -2.5 -12.1 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit compare
IAI47_16005 -2.5 -9.9 3-isopropylmalate dehydrogenase compare
IAI47_12215 -2.5 -10.2 dihydroorotase compare
IAI47_05465 -2.4 -6.6 bile acid:sodium symporter compare
IAI47_15540 -2.4 -10.4 bifunctional uridylyltransferase/uridylyl-removing protein GlnD compare
IAI47_02695 -2.4 -10.8 3'(2'),5'-bisphosphate nucleotidase CysQ compare
IAI47_07060 -2.4 -11.1 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
IAI47_18015 -2.3 -12.3 homoserine O-succinyltransferase compare
IAI47_07095 -2.3 -8.9 ATP phosphoribosyltransferase compare
IAI47_00915 -2.3 -11.7 argininosuccinate synthase compare
IAI47_14945 -2.3 -4.0 pyrroline-5-carboxylate reductase compare
IAI47_07090 -2.3 -9.6 histidinol dehydrogenase compare
IAI47_01030 -2.3 -12.3 branched-chain amino acid transaminase compare
IAI47_09240 -2.3 -4.8 HTH-type transcriptional regulator CysB compare
IAI47_15810 -2.2 -3.7 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
IAI47_16115 -2.2 -14.4 carbamoyl-phosphate synthase large subunit compare
IAI47_09275 -2.2 -8.9 orotidine-5'-phosphate decarboxylase compare
IAI47_03820 -2.2 -5.1 site-specific tyrosine recombinase XerD compare
IAI47_11175 -2.1 -5.5 ABC transporter ATP-binding protein conserved
IAI47_03855 -2.1 -6.4 LysR family transcriptional regulator compare
IAI47_12945 -2.1 -11.7 ATP-dependent Clp protease ATP-binding subunit ClpA compare
IAI47_00910 -2.1 -7.2 acetylglutamate kinase compare
IAI47_00600 -2.0 -7.1 orotate phosphoribosyltransferase compare
IAI47_08450 -2.0 -5.0 Holliday junction branch migration DNA helicase RuvB compare
IAI47_16860 -2.0 -10.2 aspartate carbamoyltransferase compare
IAI47_09010 -2.0 -7.4 formyltetrahydrofolate deformylase compare
IAI47_16195 -2.0 -8.2 transaldolase compare
IAI47_16210 -1.9 -8.9 homoserine kinase compare
IAI47_00110 -1.9 -6.7 glyoxylate/hydroxypyruvate reductase GhrB compare
IAI47_11165 -1.9 -9.8 nitrate reductase conserved
IAI47_11200 -1.9 -5.1 DotU family type IV/VI secretion system protein compare
IAI47_10320 -1.9 -1.4 Rrf2 family transcriptional regulator compare
IAI47_05155 -1.8 -12.2 polyphosphate kinase 1 compare
IAI47_06245 -1.8 -3.0 tRNA pseudouridine(38-40) synthase TruA compare
IAI47_18410 -1.8 -5.2 diaminopimelate epimerase compare
IAI47_00515 -1.8 -2.3 DNA-directed RNA polymerase subunit omega compare
IAI47_17000 -1.8 -10.2 lipoprotein NlpI compare
IAI47_11415 -1.8 -2.2 hypothetical protein compare
IAI47_01120 -1.7 -8.1 manganese efflux pump MntP compare
IAI47_08700 -1.7 -5.3 RNA chaperone ProQ compare
IAI47_00900 -1.6 -7.8 acetylornithine deacetylase compare
IAI47_00500 -1.6 -9.5 ATP-dependent DNA helicase RecG compare
IAI47_17005 -1.6 -7.0 polyribonucleotide nucleotidyltransferase compare
IAI47_13935 -1.6 -1.7 tRNA-Gln compare
IAI47_00430 -1.6 -9.6 DNA polymerase I compare
IAI47_12920 -1.5 -2.9 thioredoxin-disulfide reductase compare
IAI47_08445 -1.5 -2.0 Holliday junction branch migration protein RuvA compare
IAI47_13145 -1.5 -6.2 molybdopterin-synthase adenylyltransferase MoeB compare
IAI47_13480 -1.4 -1.7 molybdopterin synthase sulfur carrier subunit compare
IAI47_15990 -1.4 -10.0 acetolactate synthase 3 large subunit compare
IAI47_09235 -1.4 -1.7 type I DNA topoisomerase compare
IAI47_18405 -1.4 -4.9 DUF484 domain-containing protein compare
IAI47_05315 -1.3 -6.1 response regulator compare
IAI47_15985 -1.3 -6.1 acetolactate synthase small subunit compare
IAI47_06115 -1.3 -9.7 long-chain fatty acid transporter FadL compare
IAI47_16870 -1.3 -4.4 2-iminobutanoate/2-iminopropanoate deaminase compare
IAI47_09305 -1.3 -3.6 cyclic di-GMP phosphodiesterase compare
IAI47_18055 -1.3 -3.1 DNA-binding protein HU-alpha compare
IAI47_13485 -1.3 -3.8 cyclic pyranopterin monophosphate synthase MoaC compare
IAI47_13155 -1.3 -2.9 H-NS histone family protein compare
IAI47_00505 -1.3 -4.4 tRNA (guanosine(18)-2'-O)-methyltransferase TrmH compare
IAI47_08165 -1.3 -5.5 flagella biosynthesis regulatory protein FliZ compare
IAI47_01045 -1.2 -4.3 HTH-type transcriptional activator IlvY compare
IAI47_18315 -1.2 -3.9 HTH-type transcriptional regulator MetR compare
IAI47_10925 -1.2 -2.8 EAL domain-containing protein compare
IAI47_04110 -1.2 -9.7 two-component sensor histidine kinase BarA compare
IAI47_11760 -1.2 -1.9 TonB-dependent siderophore receptor compare
IAI47_13290 -1.2 -6.4 DNA-binding protein YbiB conserved
IAI47_02380 -1.1 -1.8 DNA-binding transcriptional regulator Fis compare
IAI47_16190 -1.1 -3.9 molybdopterin adenylyltransferase compare
IAI47_18535 -1.1 -7.0 ATP-dependent RNA helicase RhlB compare
IAI47_03680 -1.1 -6.5 transketolase compare
IAI47_12470 -1.1 -6.8 UvrY/SirA/GacA family response regulator transcription factor compare
IAI47_13700 -1.1 -2.4 Tol-Pal system protein TolQ compare
IAI47_15340 -1.1 -5.3 hydroxyacylglutathione hydrolase compare
IAI47_21335 -1.1 -2.1 RepB family plasmid replication initiator protein compare
IAI47_12175 -1.0 -2.6 anti-sigma-28 factor FlgM compare
IAI47_05320 -1.0 -6.6 nitrate/nitrite two-component system sensor histidine kinase NarQ compare
IAI47_05070 -1.0 -0.7 outer membrane protein assembly factor BamB compare
IAI47_12800 -1.0 -2.7 tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM compare
IAI47_04705 -0.9 -1.0 hypothetical protein compare
IAI47_18540 -0.9 -4.7 guanosine-5'-triphosphate,3'-diphosphate diphosphatase compare
IAI47_08355 -0.9 -3.4 flagellar protein FlhE compare
IAI47_06355 -0.9 -5.3 transcriptional regulator LrhA compare
IAI47_13140 -0.9 -5.0 molybdopterin molybdotransferase MoeA compare
IAI47_05425 -0.9 -3.6 phosphoenolpyruvate-protein phosphotransferase PtsI compare
IAI47_14580 -0.9 -6.4 ammonium transporter AmtB conserved
IAI47_13475 -0.9 -2.4 molybdopterin synthase catalytic subunit MoaE compare
IAI47_13545 -0.9 -4.6 6-phosphogluconolactonase compare
IAI47_19550 -0.9 -1.3 DUF1471 domain-containing protein compare
IAI47_18250 -0.9 -3.6 transcription/translation regulatory transformer protein RfaH compare
IAI47_18675 -0.9 -5.0 MarR family transcriptional regulator compare
IAI47_11630 -0.9 -2.6 hypothetical protein compare
IAI47_02685 -0.9 -3.0 FKBP-type peptidyl-prolyl cis-trans isomerase compare
IAI47_00510 -0.8 -1.8 bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase compare
IAI47_18770 -0.8 -2.1 type I addiction module toxin, SymE family compare
IAI47_16220 -0.8 -2.4 thr operon leader peptide compare
IAI47_11600 -0.8 -2.0 protein of avirulence locus ImpE compare
IAI47_07450 -0.8 -1.5 winged helix-turn-helix domain-containing protein compare
IAI47_08085 -0.8 -3.1 helix-turn-helix domain-containing protein compare
IAI47_16405 -0.8 -2.1 siderophore-iron reductase FhuF compare
IAI47_12250 -0.8 -4.8 rhodanese-related sulfurtransferase compare
IAI47_05815 -0.8 -2.0 hypothetical protein compare
IAI47_04800 -0.8 -0.8 RnfH family protein compare
IAI47_02775 -0.8 -2.3 glycine dehydrogenase compare
IAI47_18830 -0.8 -1.6 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
IAI47_13575 -0.8 -3.6 molybdenum-dependent transcriptional regulator compare
IAI47_11880 -0.8 -1.2 hypothetical protein compare
IAI47_17255 -0.8 -1.6 DUF1043 family protein compare
IAI47_02400 -0.8 -1.2 YhdT family protein compare
IAI47_16795 -0.8 -3.4 leucyl aminopeptidase compare
IAI47_21375 -0.8 -2.8 CsbD family protein compare
IAI47_05195 -0.7 -1.5 DnaA inactivator Hda compare


Specific Phenotypes

For 11 genes in this experiment

For nitrogen source Sodium nitrate in Pantoea sp. MT58

For nitrogen source Sodium nitrate across organisms