Experiment set4IT022 for Pseudomonas fluorescens SBW25-INTG

Compare to:

Sodium succinate dibasic hexahydrate carbon source; with MOPS

200 most important genes:

  gene name fitness t score description  
PFLU_RS28695 -5.0 -4.8 phosphoglycerate dehydrogenase compare
PFLU_RS02490 -4.2 -12.5 phosphoserine phosphatase SerB compare
PFLU_RS23115 -4.0 -16.9 dicarboxylate/amino acid:cation symporter compare
PFLU_RS03555 -3.9 -1.4 EscS/YscS/HrcS family type III secretion system export apparatus protein compare
PFLU_RS01400 -3.8 -13.5 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS01620 -3.8 -9.1 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
PFLU_RS29725 -3.7 -15.3 phosphate regulon transcriptional regulatory protein PhoB compare
PFLU_RS12980 -3.6 -10.2 nitrite/sulfite reductase compare
PFLU_RS12975 -3.6 -6.3 DUF934 domain-containing protein compare
PFLU_RS28655 -3.5 -14.4 HAD family hydrolase compare
PFLU_RS01625 -3.5 -2.4 imidazole glycerol phosphate synthase subunit HisF compare
PFLU_RS00210 -3.4 -3.0 OsmC family protein compare
PFLU_RS25640 -3.4 -12.7 ketol-acid reductoisomerase compare
PFLU_RS01900 -3.4 -8.7 phosphoribosyl-AMP cyclohydrolase compare
PFLU_RS27365 -3.3 -11.0 indole-3-glycerol phosphate synthase TrpC compare
PFLU_RS01605 -3.3 -10.8 imidazoleglycerol-phosphate dehydratase HisB compare
PFLU_RS29515 -3.3 -12.7 RidA family protein compare
PFLU_RS04470 -3.3 -12.2 histidinol dehydrogenase compare
PFLU_RS17545 -3.2 -1.6 DUF465 domain-containing protein compare
PFLU_RS23065 -3.1 -11.3 phosphate acyltransferase PlsX compare
PFLU_RS25755 -3.1 -3.7 pantoate--beta-alanine ligase compare
PFLU_RS09055 -3.1 -2.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
PFLU_RS04465 -3.1 -10.4 ATP phosphoribosyltransferase compare
PFLU_RS18505 -3.0 -11.5 uroporphyrinogen-III C-methyltransferase compare
PFLU_RS24125 -2.9 -8.5 cold-shock protein compare
PFLU_RS22740 -2.9 -7.1 phosphoadenylyl-sulfate reductase compare
PFLU_RS22595 -2.9 -4.7 OmpA family protein compare
PFLU_RS08165 -2.8 -2.7 acyl carrier protein compare
PFLU_RS28535 -2.8 -14.9 dihydroxy-acid dehydratase compare
PFLU_RS01610 -2.8 -12.6 imidazole glycerol phosphate synthase subunit HisH compare
PFLU_RS08160 -2.8 -8.8 sugar transferase compare
PFLU_RS26145 -2.7 -2.0 hypothetical protein compare
PFLU_RS06055 -2.6 -1.6 chemotaxis response regulator protein-glutamate methylesterase compare
PFLU_RS00175 -2.6 -9.5 tryptophan synthase subunit alpha compare
PFLU_RS13540 -2.6 -3.0 3-phosphoshikimate 1-carboxyvinyltransferase compare
PFLU_RS20690 -2.6 -3.8 hypothetical protein compare
PFLU_RS27370 -2.5 -12.5 anthranilate phosphoribosyltransferase compare
PFLU_RS21645 -2.5 -9.9 chemotaxis protein CheA compare
PFLU_RS01995 -2.4 -13.9 malate dehydrogenase compare
PFLU_RS25360 -2.4 -7.9 glutamate 5-kinase compare
PFLU_RS21995 -2.4 -4.3 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PFLU_RS20540 -2.4 -11.0 phosphoribosylanthranilate isomerase compare
PFLU_RS23305 -2.3 -10.7 arginine N-succinyltransferase compare
PFLU_RS20515 -2.3 -4.3 amidophosphoribosyltransferase compare
PFLU_RS02590 -2.3 -8.5 ATP phosphoribosyltransferase regulatory subunit compare
PFLU_RS00180 -2.3 -8.5 tryptophan synthase subunit beta compare
PFLU_RS23070 -2.3 -1.5 50S ribosomal protein L32 compare
PFLU_RS25735 -2.2 -8.7 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS04660 -2.2 -6.0 division/cell wall cluster transcriptional repressor MraZ compare
PFLU_RS13885 -2.2 -2.8 hypothetical protein compare
PFLU_RS23310 -2.2 -10.0 arginine/ornithine succinyltransferase subunit alpha compare
PFLU_RS28165 -2.2 -11.1 methylenetetrahydrofolate reductase [NAD(P)H] compare
PFLU_RS26595 -2.2 -1.5 lipoprotein compare
PFLU_RS28965 -2.1 -9.4 5-formyltetrahydrofolate cyclo-ligase compare
PFLU_RS25750 -2.1 -5.8 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PFLU_RS23185 -2.1 -11.5 protein-glutamate O-methyltransferase CheR compare
PFLU_RS13085 -2.1 -3.9 DUF1315 family protein compare
PFLU_RS01960 -2.1 -1.4 ATP-dependent protease ATPase subunit HslU compare
PFLU_RS01645 -2.0 -10.0 S41 family peptidase compare
PFLU_RS20580 -2.0 -10.4 3-isopropylmalate dehydratase large subunit compare
PFLU_RS31620 -2.0 -4.1 integrase compare
PFLU_RS25815 -1.9 -1.9 transcription termination/antitermination protein NusA compare
PFLU_RS18675 -1.9 -1.3 NADH-quinone oxidoreductase subunit NuoN compare
PFLU_RS21495 -1.9 -3.5 TlpA family protein disulfide reductase compare
PFLU_RS04070 -1.9 -5.7 peptide chain release factor 3 compare
PFLU_RS18530 -1.9 -4.5 DNA translocase FtsK compare
PFLU_RS29095 -1.9 -14.7 polyphosphate kinase 1 compare
PFLU_RS20565 -1.9 -9.8 3-isopropylmalate dehydrogenase compare
PFLU_RS13895 -1.9 -1.4 helix-turn-helix transcriptional regulator compare
PFLU_RS01895 -1.9 -4.2 phosphoribosyl-ATP diphosphatase compare
PFLU_RS00415 -1.9 -2.5 thiol:disulfide interchange protein DsbA/DsbL compare
PFLU_RS10340 -1.9 -1.9 hypothetical protein compare
PFLU_RS20520 -1.8 -8.4 colicin V production protein CvpA compare
PFLU_RS28315 -1.8 -1.3 response regulator compare
PFLU_RS22095 -1.8 -12.5 GTP diphosphokinase compare
PFLU_RS20575 -1.8 -3.7 3-isopropylmalate dehydratase small subunit compare
PFLU_RS29360 -1.8 -1.5 cytochrome c5 family protein compare
PFLU_RS18000 -1.8 -2.0 AhpC/TSA family protein compare
PFLU_RS00535 -1.7 -2.3 DUF1127 domain-containing protein compare
PFLU_RS03765 -1.7 -7.7 sulfate adenylyltransferase subunit CysD compare
PFLU_RS18655 -1.7 -2.4 NADH-quinone oxidoreductase subunit J compare
PFLU_RS21690 -1.7 -3.7 DNA-binding protein compare
PFLU_RS24765 -1.7 -11.7 2-isopropylmalate synthase compare
PFLU_RS30165 -1.7 -8.0 ParA family protein compare
PFLU_RS22105 -1.7 -4.7 cysteine synthase CysM compare
PFLU_RS07540 -1.7 -1.7 class II glutamine amidotransferase compare
PFLU_RS28310 -1.7 -1.6 response regulator compare
PFLU_RS24160 -1.7 -5.7 HAMP domain-containing protein compare
PFLU_RS10405 -1.7 -3.2 helix-turn-helix transcriptional regulator compare
PFLU_RS05250 -1.7 -4.1 elongation factor 4 compare
PFLU_RS01320 -1.7 -7.4 phosphoenolpyruvate carboxykinase compare
PFLU_RS25595 -1.7 -1.1 exodeoxyribonuclease V subunit gamma compare
PFLU_RS04715 -1.6 -4.6 D-alanine--D-alanine ligase compare
PFLU_RS22070 -1.6 -3.5 phosphoribosylglycinamide formyltransferase compare
PFLU_RS03770 -1.6 -9.0 sulfate adenylyltransferase subunit CysN compare
PFLU_RS20510 -1.6 -8.7 O-succinylhomoserine sulfhydrylase compare
PFLU_RS26545 -1.6 -8.1 sel1 repeat family protein compare
PFLU_RS24205 -1.6 -1.8 DNA binding protein compare
PFLU_RS03645 -1.6 -9.2 tetratricopeptide repeat protein compare
PFLU_RS24095 -1.6 -2.9 crossover junction endodeoxyribonuclease RuvC compare
PFLU_RS18665 -1.6 -3.0 NADH-quinone oxidoreductase subunit L compare
PFLU_RS12800 -1.6 -2.0 amino acid ABC transporter ATP-binding protein compare
PFLU_RS19550 -1.6 -1.1 ABC transporter ATP-binding protein compare
PFLU_RS04945 -1.6 -2.9 molybdopterin synthase catalytic subunit MoaE compare
PFLU_RS28390 -1.5 -7.7 methionine biosynthesis protein MetW compare
PFLU_RS31755 -1.5 -1.3 hypothetical protein compare
PFLU_RS25225 -1.5 -6.3 disulfide bond formation protein B compare
PFLU_RS22010 -1.5 -5.9 threonine-phosphate decarboxylase compare
PFLU_RS00060 -1.4 -3.7 DNA-3-methyladenine glycosylase I compare
PFLU_RS24085 -1.4 -3.6 Holliday junction branch migration DNA helicase RuvB compare
PFLU_RS18635 -1.4 -3.0 NADH-quinone oxidoreductase subunit NuoF compare
PFLU_RS24025 -1.4 -7.5 quinolinate synthase NadA compare
PFLU_RS00530 -1.4 -1.4 DUF2388 domain-containing protein compare
PFLU_RS29275 -1.4 -4.2 DUF484 family protein compare
PFLU_RS04165 -1.4 -3.7 cell division protein ZapE compare
PFLU_RS28385 -1.4 -7.1 homoserine O-acetyltransferase compare
PFLU_RS03970 -1.4 -5.8 carboxylating nicotinate-nucleotide diphosphorylase compare
PFLU_RS01965 -1.4 -1.8 ATP-dependent protease subunit HslV compare
PFLU_RS24090 -1.4 -3.1 Holliday junction branch migration protein RuvA compare
PFLU_RS18620 -1.4 -4.3 NADH-quinone oxidoreductase subunit B compare
PFLU_RS26290 -1.4 -0.9 2Fe-2S iron-sulfur cluster binding domain-containing protein compare
PFLU_RS13975 -1.4 -1.4 hypothetical protein compare
PFLU_RS24485 -1.4 -7.5 hypothetical protein compare
PFLU_RS19170 -1.4 -3.5 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
PFLU_RS12175 -1.4 -1.4 methyl-accepting chemotaxis protein compare
PFLU_RS31805 -1.3 -1.6 hypothetical protein compare
PFLU_RS24670 -1.3 -1.7 HigA family addiction module antidote protein compare
PFLU_RS07495 -1.3 -2.8 DUF2892 domain-containing protein compare
PFLU_RS15410 -1.3 -2.2 zinc-dependent alcohol dehydrogenase family protein compare
PFLU_RS02790 -1.3 -1.5 TetR family transcriptional regulator compare
PFLU_RS14550 -1.3 -6.0 UTP--glucose-1-phosphate uridylyltransferase GalU compare
PFLU_RS30630 -1.3 -0.8 hypothetical protein compare
PFLU_RS10095 -1.3 -2.8 antibiotic biosynthesis monooxygenase compare
PFLU_RS05630 -1.3 -1.7 amino acid ABC transporter ATP-binding protein compare
PFLU_RS18645 -1.3 -2.1 NADH-quinone oxidoreductase subunit NuoH compare
PFLU_RS02970 -1.3 -5.0 bifunctional cobalt-precorrin-7 (C(5))-methyltransferase/cobalt-precorrin-6B (C(15))-methyltransferase compare
PFLU_RS01005 -1.3 -1.6 ABC transporter ATP-binding protein compare
PFLU_RS07910 -1.3 -1.4 type 1 fimbrial protein compare
PFLU_RS13640 -1.3 -2.0 isochorismatase family protein compare
PFLU_RS18640 -1.2 -3.4 NADH-quinone oxidoreductase subunit NuoG compare
PFLU_RS30730 -1.2 -2.2 helix-turn-helix domain-containing protein compare
PFLU_RS22600 -1.2 -1.4 RNA polymerase sigma factor SigX compare
PFLU_RS23730 -1.2 -7.7 MurR/RpiR family transcriptional regulator compare
PFLU_RS31630 -1.2 -2.0 hypothetical protein compare
PFLU_RS29745 -1.2 -2.0 response regulator compare
PFLU_RS18175 -1.2 -2.3 sugar ABC transporter substrate-binding protein compare
PFLU_RS08350 -1.2 -1.8 ABC transporter ATP-binding protein compare
PFLU_RS30160 -1.2 -2.1 ParB/RepB/Spo0J family partition protein compare
PFLU_RS09305 -1.2 -7.8 hypothetical protein compare
PFLU_RS01405 -1.2 -4.6 sensor histidine kinase compare
PFLU_RS14805 -1.2 -1.5 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF compare
PFLU_RS26640 -1.2 -6.8 septal ring lytic transglycosylase RlpA family protein compare
PFLU_RS30670 -1.2 -2.3 DUF4102 domain-containing protein compare
PFLU_RS13750 -1.1 -1.7 hypothetical protein compare
PFLU_RS30555 -1.1 -1.3 hypothetical protein compare
PFLU_RS29550 -1.1 -5.6 ATP-dependent DNA helicase RecG compare
PFLU_RS28860 -1.1 -3.5 acetylornithine deacetylase compare
PFLU_RS10985 -1.1 -3.7 amino acid ABC transporter permease compare
PFLU_RS17615 -1.1 -1.4 DeoR/GlpR transcriptional regulator compare
PFLU_RS27380 -1.1 -6.7 anthranilate synthase component I compare
PFLU_RS18585 -1.1 -1.7 high frequency lysogenization protein HflD compare
PFLU_RS05780 -1.1 -6.3 helix-turn-helix transcriptional regulator compare
PFLU_RS00190 -1.1 -1.4 DUF883 domain-containing protein compare
PFLU_RS13715 -1.1 -1.1 MmcQ/YjbR family DNA-binding protein compare
PFLU_RS31100 -1.1 -2.8 preprotein translocase subunit SecG compare
PFLU_RS09980 -1.1 -7.7 peptidase S41 compare
PFLU_RS28320 -1.1 -1.9 glutathione synthase compare
PFLU_RS02050 -1.1 -7.3 NAD(P)-binding protein compare
PFLU_RS00895 -1.1 -2.3 hypothetical protein compare
PFLU_RS30345 -1.1 -1.3 DUF2559 family protein compare
PFLU_RS12155 -1.0 -4.1 helix-turn-helix transcriptional regulator compare
PFLU_RS04325 -1.0 -7.5 ribonuclease G compare
PFLU_RS22725 -1.0 -2.2 transcriptional regulator compare
PFLU_RS30500 -1.0 -2.8 LapA family protein compare
PFLU_RS05885 -1.0 -3.7 recombinase RecA compare
PFLU_RS01885 -1.0 -2.4 Sec-independent protein translocase subunit TatB compare
PFLU_RS16320 -1.0 -3.8 DNA adenine methylase compare
PFLU_RS16655 -1.0 -3.6 hypothetical protein compare
PFLU_RS03585 -1.0 -1.1 hypothetical protein compare
PFLU_RS07275 -1.0 -1.8 4-hydroxy-tetrahydrodipicolinate synthase compare
PFLU_RS13045 -1.0 -4.0 AAA domain-containing protein compare
PFLU_RS28645 -1.0 -7.0 phosphoenolpyruvate--protein phosphotransferase compare
PFLU_RS24790 -1.0 -2.1 tetratricopeptide repeat protein compare
PFLU_RS30470 -1.0 -1.7 addiction module antidote protein compare
PFLU_RS29090 -1.0 -4.3 exopolyphosphatase compare
PFLU_RS31615 -1.0 -3.1 hypothetical protein compare
PFLU_RS09535 -1.0 -0.6 TIGR03750 family conjugal transfer protein compare
PFLU_RS22015 -1.0 -5.9 cobalamin biosynthesis protein compare
PFLU_RS05340 -1.0 -1.4 SDR family NAD(P)-dependent oxidoreductase compare
PFLU_RS05875 -1.0 -1.6 lysozyme compare
PFLU_RS25740 -1.0 -3.9 polynucleotide adenylyltransferase PcnB compare
PFLU_RS13000 -1.0 -7.1 methionine synthase compare
PFLU_RS08670 -1.0 -1.8 heme lyase CcmF/NrfE family subunit compare
PFLU_RS08665 -1.0 -1.5 cytochrome c maturation protein CcmE compare
PFLU_RS20335 -1.0 -1.4 hypothetical protein compare
PFLU_RS16580 -1.0 -2.2 hypothetical protein compare
PFLU_RS19995 -1.0 -2.1 Fe(3+)-dicitrate ABC transporter substrate-binding protein FecB compare
PFLU_RS04220 -1.0 -3.9 FadR family transcriptional regulator compare
PFLU_RS08505 -1.0 -4.1 protease HtpX compare
PFLU_RS06320 -1.0 -2.0 OmpH family outer membrane protein compare


Specific Phenotypes

For 1 genes in this experiment

For carbon source Sodium succinate dibasic hexahydrate in Pseudomonas fluorescens SBW25-INTG

For carbon source Sodium succinate dibasic hexahydrate across organisms