Experiment set4IT022 for Methanococcus maripaludis S2

Compare to:

H2 deepwell vitamin and casamino acid FREE

200 most important genes:

  gene name fitness t score description  
MMP_RS01455 -10.6 -3.9 nickel pincer cofactor biosynthesis protein LarC compare
MMP_RS07845 -9.1 -2.1 LL-diaminopimelate aminotransferase compare
MMP_RS05500 -9.0 -6.4 2-isopropylmalate synthase compare
MMP_RS06355 -8.8 -2.0 molybdenum cofactor biosynthesis protein MoaE compare
MMP_RS03450 -8.6 -2.0 glycine synthesis protein GlyXS (from data) compare
MMP_RS04605 -8.3 -3.7 cobalt ECF transporter T component CbiQ compare
MMP_RS06370 -8.1 -3.5 biotin synthase BioB compare
MMP_RS06375 -8.1 -4.8 ATP-dependent sacrificial sulfur transferase LarE compare
MMP_RS07185 -8.1 -9.6 pyridoxal phosphate-dependent aminotransferase compare
MMP_RS06270 -7.9 -3.6 TIGR00300 family protein compare
MMP_RS08095 -7.8 -6.2 dethiobiotin synthase compare
MMP_RS03580 -7.6 -2.4 signal recognition particle-docking protein FtsY compare
MMP_RS08210 -7.2 -1.9 phosphatidylglycerophosphatase A compare
MMP_RS01175 -7.1 -3.4 triphosphoribosyl-dephospho-CoA synthase compare
MMP_RS05930 -7.0 -2.1 3-isopropylmalate dehydratase large subunit compare
MMP_RS08105 -6.9 -5.8 6-carboxyhexanoate--CoA ligase compare
MMP_RS09020 -6.9 -1.6 hypothetical protein compare
MMP_RS01795 -6.9 -1.6 methanogenesis marker 6 protein compare
MMP_RS04215 -6.9 -6.7 nickel pincer cofactor biosynthesis protein LarB compare
MMP_RS06730 -6.8 -1.8 phosphopantothenate/pantothenate synthetase compare
MMP_RS07345 -6.8 -5.4 glycine synthesis protein GlyXL (from data) compare
MMP_RS06625 -6.8 -1.8 DNA primase compare
MMP_RS06120 -6.7 -1.8 UPF0147 family protein compare
MMP_RS04500 -6.7 -17.2 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
MMP_RS03600 -6.7 -1.9 triose-phosphate isomerase compare
MMP_RS04620 -6.6 -11.2 cobalt transporter CbiM compare
MMP_RS04710 -6.5 -1.5 hypothetical protein compare
MMP_RS08715 -6.5 -1.7 formylmethanofuran dehydrogenase subunit B compare
MMP_RS06975 -6.5 -2.0 sulfide-dependent adenosine diphosphate thiazole synthase compare
MMP_RS06285 -6.4 -2.3 precorrin-6Y C5 15-methyltransferase (decarboxylating) subunit CbiT compare
MMP_RS04775 -6.4 -2.5 adenosylhomocysteinase compare
MMP_RS05845 -6.4 -1.7 tRNA-intron lyase compare
MMP_RS03035 -6.3 -3.2 4-hydroxy-tetrahydrodipicolinate synthase compare
MMP_RS03435 -6.3 -1.6 ketol-acid reductoisomerase compare
MMP_RS04685 -6.2 -3.0 DUF126 domain-containing protein compare
MMP_RS01885 -6.1 -9.2 Gfo/Idh/MocA family oxidoreductase compare
MMP_RS03445 -6.0 -0.8 methanogenesis marker 17 protein compare
MMP_RS01020 -6.0 -0.8 3 4-dihydroxy-2-butanone-4-phosphate synthase compare
MMP_RS06895 -5.9 -1.9 selenocysteine-specific translation elongation factor compare
MMP_RS07630 -5.8 -1.3 ATP-binding cassette domain-containing protein compare
MMP_RS07390 -5.8 -1.9 cell division protein FtsZ compare
MMP_RS04780 -5.8 -2.1 ribonuclease P compare
MMP_RS03315 -5.7 -1.3 ferrous iron transport protein A compare
MMP_RS08100 -5.7 -6.0 8-amino-7-oxononanoate synthase compare
MMP_RS07730 -5.7 -1.7 pyruvate synthase subunit beta compare
MMP_RS03960 -5.7 -0.7 hypothetical protein compare
MMP_RS02280 -5.7 -0.7 DUF211 domain-containing protein compare
MMP_RS01610 -5.6 -2.9 hypothetical protein compare
MMP_RS03400 -5.6 -2.9 archease compare
MMP_RS01925 -5.6 -13.0 DUF1616 domain-containing protein compare
MMP_RS01830 -5.6 -1.0 tRNA-Val compare
MMP_RS06400 -5.6 -1.7 4Fe-4S binding protein compare
MMP_RS08790 -5.5 -2.0 translation initiation factor IF-2 subunit alpha compare
MMP_RS05265 -5.5 -1.8 2-isopropylmalate synthase compare
MMP_RS02135 -5.5 -4.3 DUF5612 domain-containing protein compare
MMP_RS07750 -5.5 -4.1 DUF357 domain-containing protein compare
MMP_RS01225 -5.5 -5.6 DUF5379 domain-containing protein compare
MMP_RS00305 -5.4 -1.6 phosphoribosyl-ATP diphosphatase compare
MMP_RS06230 -5.4 -1.9 helix-turn-helix domain-containing protein compare
MMP_RS01875 -5.4 -11.6 N-acetyltransferase compare
MMP_RS07600 -5.3 -2.6 Ni-sirohydrochlorin a c-diamide synthase compare
MMP_RS03700 -5.3 -10.5 sodium:proton antiporter compare
MMP_RS04720 -5.3 -2.6 DedA family protein compare
MMP_RS01325 -5.3 -2.2 dihydroneopterin aldolase family protein compare
MMP_RS05515 -5.2 -6.3 cyclic pyranopterin monophosphate synthase MoaC compare
MMP_RS02145 -5.2 -9.2 winged helix-turn-helix transcriptional regulator compare
MMP_RS02240 -5.2 -3.7 methanogenesis marker 7 protein compare
MMP_RS01005 -5.2 -1.0 riboflavin synthase compare
MMP_RS02345 -5.1 -3.2 GTP-dependent dephospho-CoA kinase family protein compare
MMP_RS02900 -5.0 -0.7 imidazoleglycerol-phosphate dehydratase HisB compare
MMP_RS04790 -5.0 -11.5 4-hydroxy-tetrahydrodipicolinate reductase compare
MMP_RS05425 -5.0 -4.4 monovalent cation/H+ antiporter complex subunit F compare
MMP_RS03015 -4.9 -9.0 GTP 3' 8-cyclase MoaA compare
MMP_RS07555 -4.9 -0.6 monovalent cation/H+ antiporter subunit E compare
MMP_RS04615 -4.9 -3.2 PDGLE domain-containing protein compare
MMP_RS08635 -4.9 -1.6 UbiA family prenyltransferase compare
MMP_RS06020 -4.9 -5.0 archaeoflavoprotein AfpA compare
MMP_RS07635 -4.9 -7.9 MogA/MoaB family molybdenum cofactor biosynthesis protein compare
MMP_RS01900 -4.9 -20.2 hypothetical protein compare
MMP_RS01755 -4.9 -0.9 DUF2097 domain-containing protein compare
MMP_RS01800 -4.8 -4.5 TIGR00303 family protein compare
MMP_RS06350 -4.8 -6.0 HesA/MoeB/ThiF family protein compare
MMP_RS00300 -4.8 -0.6 6 7-dimethyl-8-ribityllumazine synthase compare
MMP_RS07195 -4.8 -8.5 M20 family metallo-hydrolase compare
MMP_RS02195 -4.7 -3.9 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-methylthiotransferase compare
MMP_RS07645 -4.7 -4.9 aldehyde dehydrogenase family protein compare
MMP_RS03475 -4.7 -0.6 hypothetical protein compare
MMP_RS07005 -4.7 -0.6 4Fe-4S binding protein compare
MMP_RS02875 -4.7 -11.0 chorismate pyruvate-lyase family protein compare
MMP_RS03025 -4.6 -5.9 molybdenum cofactor guanylyltransferase compare
MMP_RS00110 -4.6 -2.6 hypothetical protein compare
MMP_RS08460 -4.6 -2.4 proteasome-activating nucleotidase compare
MMP_RS08745 -4.6 -7.0 CDP-2 3-bis-(O-geranylgeranyl)-sn-glycerol synthase compare
MMP_RS07755 -4.5 -0.8 DUF555 domain-containing protein compare
MMP_RS08820 -4.4 -5.5 hypothetical protein compare
MMP_RS07955 -4.4 -5.0 FumA C-terminus/TtdB family hydratase beta subunit compare
MMP_RS07545 -4.3 -0.8 HTH domain-containing protein compare
MMP_RS08720 -4.3 -1.6 4Fe-4S binding protein compare
MMP_RS01975 -4.3 -16.6 hypothetical protein compare
MMP_RS01700 -4.3 -0.8 dihydroxy-acid dehydratase compare
MMP_RS00895 -4.3 -4.7 hypothetical protein compare
MMP_RS08300 -4.3 -1.0 metal-sulfur cluster assembly factor compare
MMP_RS05555 -4.2 -1.1 DUF4040 domain-containing protein compare
MMP_RS06725 -4.2 -11.7 hypothetical protein compare
MMP_RS01905 -4.2 -16.9 glycosyltransferase compare
MMP_RS04090 -4.1 -3.2 hypothetical protein compare
MMP_RS00685 -4.1 -3.8 2-phospho-L-lactate guanylyltransferase compare
MMP_RS00515 -4.0 -0.7 DUF655 domain-containing protein compare
MMP_RS06475 -4.0 -5.3 FAD-dependent oxidoreductase compare
MMP_RS01880 -4.0 -7.2 DegT/DnrJ/EryC1/StrS family aminotransferase compare
MMP_RS04890 -4.0 -0.7 adenylyltransferase/cytidyltransferase family protein compare
MMP_RS00695 -4.0 -0.7 biotin--[acetyl-CoA-carboxylase] ligase compare
MMP_RS08650 -4.0 -3.3 glutamine--fructose-6-phosphate transaminase (isomerizing) compare
MMP_RS06670 -3.9 -6.5 glucose-6-phosphate isomerase compare
MMP_RS08330 -3.9 -5.8 NADH-quinone oxidoreductase subunit H compare
MMP_RS01380 -3.9 -4.8 PHP domain-containing protein compare
MMP_RS06340 -3.9 -6.4 phosphoadenosine phosphosulfate reductase family protein compare
MMP_RS01890 -3.8 -4.4 nucleotide sugar dehydrogenase compare
MMP_RS03390 -3.7 -8.0 malate dehydrogenase compare
MMP_RS07200 -3.7 -6.6 [5-(aminomethyl)furan-3-yl]methyl phosphate kinase compare
MMP_RS01500 -3.7 -2.3 CBS domain-containing protein compare
MMP_RS07735 -3.6 -0.7 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha compare
MMP_RS00810 -3.6 -6.3 topoisomerase DNA-binding C4 zinc finger domain-containing protein compare
MMP_RS01955 -3.6 -3.0 hypothetical protein compare
MMP_RS07575 -3.6 -3.2 RNA ligase partner protein compare
MMP_RS05345 -3.5 -8.1 hypothetical protein compare
MMP_RS01385 -3.5 -0.6 imidazole glycerol phosphate synthase subunit HisH compare
MMP_RS05640 -3.5 -6.4 UTP--glucose-1-phosphate uridylyltransferase GalU compare
MMP_RS07710 -3.4 -6.5 cell division protein FtsZ compare
MMP_RS05920 -3.4 -0.6 50S ribosomal protein L37e compare
MMP_RS03205 -3.4 -1.2 peptidyl-tRNA hydrolase Pth2 compare
MMP_RS02355 -3.4 -2.8 30S ribosomal protein S27ae compare
MMP_RS06295 -3.4 -5.9 methanogenesis marker 14 protein compare
MMP_RS08360 -3.4 -3.3 hypothetical protein compare
MMP_RS01220 -3.4 -7.0 hypothetical protein compare
MMP_RS05950 -3.3 -11.0 nickel-dependent hydrogenase large subunit compare
MMP_RS06105 -3.3 -8.4 hydrogenase maturation peptidase HycI compare
MMP_RS06885 -3.3 -2.4 50S ribosome-binding GTPase compare
MMP_RS07075 -3.3 -3.3 phosphomannomutase/phosphoglucomutase compare
MMP_RS05815 -3.3 -2.3 NOL1/NOP2/sun family putative RNA methylase compare
MMP_RS08355 -3.3 -7.1 Na(+)/H(+) antiporter subunit B compare
MMP_RS06930 -3.3 -13.0 MBL fold metallo-hydrolase compare
MMP_RS06925 -3.3 -2.4 ribonuclease VapC4 compare
MMP_RS06130 -3.2 -4.0 peptidylprolyl isomerase compare
MMP_RS01910 -3.2 -10.1 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
MMP_RS07625 -3.2 -3.7 cobalt ECF transporter T component CbiQ compare
MMP_RS04585 -3.1 -8.8 AIR synthase related protein compare
MMP_RS08440 -3.1 -2.2 cell division protein SepF compare
MMP_RS07580 -3.0 -2.9 DUF356 domain-containing protein compare
MMP_RS00750 -3.0 -2.4 fumarate hydratase compare
MMP_RS03145 -3.0 -5.9 fibrillarin-like rRNA/tRNA 2'-O-methyltransferase compare
MMP_RS07725 -3.0 -4.0 4Fe-4S dicluster domain-containing protein compare
MMP_RS06630 -2.9 -0.9 UPF0058 family protein compare
MMP_RS01915 -2.9 -13.2 DUF354 domain-containing protein compare
MMP_RS04875 -2.9 -5.8 energy-converting hydrogenase B subunit P compare
MMP_RS01970 -2.9 -13.2 TIGR04279 domain-containing protein compare
MMP_RS08165 -2.9 -2.5 phosphoglycerate dehydrogenase compare
MMP_RS07875 -2.8 -5.4 hypothetical protein compare
MMP_RS03140 -2.8 -12.5 hypothetical protein compare
MMP_RS08340 -2.7 -3.4 4Fe-4S binding protein compare
MMP_RS07540 -2.7 -4.1 CBS domain-containing protein compare
MMP_RS00900 -2.7 -2.0 50S ribosomal protein L39e compare
MMP_RS08345 -2.6 -10.7 4Fe-4S binding protein compare
MMP_RS07605 -2.6 -2.9 diadenylate cyclase compare
MMP_RS01895 -2.6 -12.4 flippase compare
MMP_RS08645 -2.6 -6.1 UPF0179 family protein compare
MMP_RS03250 -2.5 -3.2 MJ1244 family protein compare
MMP_RS01960 -2.5 -0.6 hypothetical protein compare
MMP_RS08840 -2.5 -8.8 class I SAM-dependent methyltransferase compare
MMP_RS08365 -2.5 -3.8 energy conserving hydrogenase EhbF compare
MMP_RS01725 -2.5 -3.2 class I SAM-dependent methyltransferase family protein compare
MMP_RS05550 -2.4 -0.6 cation:proton antiporter compare
MMP_RS07435 -2.4 -2.0 GMP synthase subunit A compare
MMP_RS02800 -2.4 -4.3 nucleotidyltransferase domain-containing protein compare
MMP_RS00115 -2.4 -11.0 radical SAM protein compare
MMP_RS06310 -2.4 -5.3 NAD(P)/FAD-dependent oxidoreductase compare
MMP_RS03095 -2.4 -6.9 diphthine synthase compare
MMP_RS05925 -2.3 -3.0 small nuclear ribonucleoprotein compare
MMP_RS02010 -2.3 -5.4 PHP domain-containing protein compare
MMP_RS05250 -2.3 -1.4 NFYB/HAP3 family transcription factor subunit compare
MMP_RS01840 -2.3 -5.2 TIGR00289 family protein compare
MMP_RS00735 -2.3 -2.7 5 10-methenyltetrahydromethanopterin hydrogenase compare
MMP_RS08335 -2.3 -4.2 NADH-quinone oxidoreductase subunit B family protein compare
MMP_RS01920 -2.3 -12.1 glycosyltransferase family 2 protein compare
MMP_RS03640 -2.2 -3.0 archaeal proteasome endopeptidase complex subunit beta compare
MMP_RS08370 -2.2 -0.6 cation:proton antiporter subunit C compare
MMP_RS02190 -2.2 -2.5 sulfopyruvate decarboxylase subunit alpha compare
MMP_RS05430 -2.2 -3.2 TIGR00288 family NYN domain-containing protein compare
MMP_RS08435 -2.2 -1.7 Era-like GTP-binding protein compare
MMP_RS07355 -2.1 -0.9 transcription factor S compare
MMP_RS02885 -2.1 -11.3 molybdopterin biosynthesis protein compare
MMP_RS04785 -2.1 -8.7 hypothetical protein compare
MMP_RS08155 -2.1 -5.1 hypothetical protein compare
MMP_RS06700 -2.0 -7.2 hypothetical protein compare
MMP_RS07420 -1.9 -2.4 metalloregulator ArsR/SmtB family transcription factor compare
MMP_RS00315 -1.9 -6.5 Nif3-like dinuclear metal center hexameric protein compare
MMP_RS00985 -1.9 -3.6 CDC48 family AAA ATPase compare
MMP_RS03110 -1.9 -5.0 glycosyltransferase family 2 protein compare
MMP_RS08350 -1.9 -0.9 hypothetical protein compare
MMP_RS06855 -1.9 -6.8 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Methanococcus maripaludis S2 in nutrient t2 experiments

For nutrient t2 Sodium acetate across organisms