Experiment set4IT022 for Pantoea sp. MT58

Compare to:

nitrogen source Ammonium chloride 20mM

200 most detrimental genes:

  gene name fitness t score description  
IAI47_09245 +1.8 9.9 YmiA family putative membrane protein compare
IAI47_16995 +1.8 5.1 protein YrbN compare
IAI47_01820 +1.3 9.5 two-component system response regulator OmpR compare
IAI47_07010 +1.2 4.5 ABC transporter permease compare
IAI47_01750 +1.2 6.8 glycerol-3-phosphate dehydrogenase compare
IAI47_00670 +1.1 10.7 sugar glycosyltransferase compare
IAI47_03610 +1.1 5.3 YqgE/AlgH family protein compare
IAI47_07015 +1.1 6.8 ABC transporter ATP-binding protein compare
IAI47_03640 +1.1 9.7 glycosyltransferase compare
IAI47_00675 +1.1 9.7 glycosyltransferase family 9 protein compare
IAI47_12570 +1.1 1.7 tRNA-Ser compare
IAI47_03645 +1.0 9.5 O-antigen ligase family protein compare
IAI47_09305 +1.0 3.0 cyclic di-GMP phosphodiesterase compare
IAI47_07020 +1.0 3.7 hypothetical protein compare
IAI47_13050 +1.0 5.5 YbjN domain-containing protein compare
IAI47_00935 +1.0 6.1 Si-specific NAD(P)(+) transhydrogenase compare
IAI47_15690 +1.0 5.1 hypoxanthine phosphoribosyltransferase compare
IAI47_07025 +1.0 7.4 glycosyltransferase family 4 protein compare
IAI47_14545 +1.0 4.8 hypothetical protein compare
IAI47_07000 +1.0 7.1 UDP-glucose 4-epimerase GalE compare
IAI47_09360 +0.9 1.5 peptide ABC transporter ATP-binding protein SapF compare
IAI47_06395 +0.9 2.4 NADH-quinone oxidoreductase subunit NuoI compare
IAI47_00940 +0.9 6.3 HTH-type transcriptional repressor FabR compare
IAI47_07030 +0.9 6.0 HAD family hydrolase compare
IAI47_01825 +0.9 6.9 two-component system sensor histidine kinase EnvZ compare
IAI47_12060 +0.9 4.2 beta-ketoacyl-ACP synthase II compare
IAI47_11210 +0.9 6.4 type VI secretion system-associated protein TagF compare
IAI47_21880 +0.8 0.8 ParA family protein compare
IAI47_03550 +0.8 6.4 membrane-bound lytic murein transglycosylase MltC compare
IAI47_07970 +0.8 4.9 flagellar type III secretion system protein FliR compare
IAI47_00655 +0.8 2.2 glycosyltransferase family 4 protein compare
IAI47_05420 +0.8 1.1 PTS glucose transporter subunit IIA compare
IAI47_05520 +0.8 1.2 tRNA-Ala compare
IAI47_13065 +0.7 1.0 DUF1418 family protein compare
IAI47_11215 +0.7 5.7 type VI secretion system-associated FHA domain protein TagH compare
IAI47_13850 +0.7 3.3 LexA regulated protein compare
IAI47_14015 +0.7 3.9 ribosome silencing factor compare
IAI47_11220 +0.7 4.4 serine/threonine-protein phosphatase compare
IAI47_07525 +0.7 2.4 conjugal transfer protein TraD compare
IAI47_14695 +0.7 3.3 cytochrome o ubiquinol oxidase subunit IV compare
IAI47_18270 +0.7 3.0 twin-arginine translocase TatA/TatE family subunit compare
IAI47_17285 +0.7 2.1 entericidin A/B family lipoprotein compare
IAI47_06400 +0.7 2.4 NADH-quinone oxidoreductase subunit J compare
IAI47_20065 +0.7 4.0 YebG family protein compare
IAI47_20600 +0.7 2.1 hypothetical protein compare
IAI47_13640 +0.7 2.1 methylated-DNA--[protein]-cysteine S-methyltransferase compare
IAI47_07980 +0.6 3.7 flagellar type III secretion system pore protein FliP compare
IAI47_07480 +0.6 2.0 hypothetical protein compare
IAI47_09550 +0.6 2.9 hypothetical protein compare
IAI47_06565 +0.6 2.0 YejL family protein compare
IAI47_11610 +0.6 3.9 serine/threonine-protein phosphatase compare
IAI47_00760 +0.6 3.3 envelope stress response regulator transcription factor CpxR compare
IAI47_20625 +0.6 1.9 DUF2946 domain-containing protein compare
IAI47_10790 +0.6 2.3 YnhF family membrane protein compare
IAI47_04505 +0.6 3.8 transcriptional repressor MprA compare
IAI47_17385 +0.6 1.8 CDP-alcohol phosphatidyltransferase family protein compare
IAI47_14200 +0.6 1.7 hypothetical protein compare
IAI47_13885 +0.6 1.2 N-acetylglucosamine-6-phosphate deacetylase compare
IAI47_06360 +0.6 1.8 NADH-quinone oxidoreductase subunit A compare
IAI47_08465 +0.6 4.0 zinc ABC transporter substrate-binding protein ZnuA compare
IAI47_02345 +0.6 0.9 5S ribosomal RNA compare
IAI47_17205 +0.6 1.0 PTS phosphocarrier protein NPr compare
IAI47_00925 +0.6 1.6 hypothetical protein compare
IAI47_02455 +0.6 4.4 ribonuclease G compare
IAI47_02460 +0.6 5.2 AsmA2 domain-containing protein YhdP compare
IAI47_15425 +0.5 3.0 Rho-binding antiterminator compare
IAI47_11520 +0.5 2.8 type VI secretion system tip protein VgrG compare
IAI47_14730 +0.5 0.9 exodeoxyribonuclease VII small subunit compare
IAI47_18520 +0.5 5.0 UDP-N-acetylglucosamine--undecaprenyl-phosphate N-acetylglucosaminephosphotransferase compare
IAI47_10500 +0.5 4.4 dipeptide/tripeptide permease DtpA compare
IAI47_05050 +0.5 2.8 cytoskeleton protein RodZ compare
IAI47_08280 +0.5 3.5 flagellar transcriptional regulator FlhD compare
IAI47_14705 +0.5 3.6 MFS transporter compare
IAI47_13825 +0.5 2.9 YbfA family protein compare
IAI47_05665 +0.5 2.3 hypothetical protein compare
IAI47_02715 +0.5 4.7 outer membrane protein assembly factor compare
IAI47_06625 +0.5 3.9 bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase compare
IAI47_13765 +0.5 1.6 succinate dehydrogenase cytochrome b556 subunit compare
IAI47_17075 +0.5 1.8 ribosome assembly RNA-binding protein YhbY compare
IAI47_02720 +0.5 4.6 translocation/assembly module TamB compare
IAI47_18595 +0.5 4.3 endoglucanase compare
IAI47_14940 +0.5 1.6 YaiI/YqxD family protein compare
IAI47_14710 +0.5 2.0 YajQ family cyclic di-GMP-binding protein compare
IAI47_08160 +0.5 3.2 RNA polymerase sigma factor FliA compare
IAI47_17140 +0.5 4.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
IAI47_19035 +0.5 1.5 transcriptional regulator compare
IAI47_12715 +0.5 4.1 glycosyltransferase family 2 protein compare
IAI47_01740 +0.5 1.4 triphosphoribosyl-dephospho-CoA synthase compare
IAI47_18265 +0.5 1.6 Sec-independent protein translocase subunit TatB compare
IAI47_17170 +0.5 2.8 LPS export ABC transporter periplasmic protein LptC compare
IAI47_06390 +0.5 2.0 NADH-quinone oxidoreductase subunit NuoH compare
IAI47_11535 +0.5 1.7 DcrB-related protein compare
IAI47_20330 +0.5 2.6 LacI family DNA-binding transcriptional regulator compare
IAI47_00660 +0.5 3.9 putative lipopolysaccharide heptosyltransferase III compare
IAI47_17895 +0.5 2.8 diacylglycerol kinase compare
IAI47_09345 +0.5 2.8 LysR family transcriptional regulator compare
IAI47_08855 +0.5 2.2 septum site-determining protein MinC compare
IAI47_04770 +0.5 3.0 ATP-binding protein compare
IAI47_15835 +0.5 3.8 beta-lactamase regulator AmpE compare
IAI47_08590 +0.5 1.1 hypothetical protein compare
IAI47_06370 +0.5 2.5 NADH-quinone oxidoreductase subunit C/D compare
IAI47_07005 +0.5 2.2 glycosyltransferase family 4 protein compare
IAI47_19890 +0.5 1.5 hypothetical protein compare
IAI47_04545 +0.5 2.1 glutaredoxin-like protein NrdH compare
IAI47_21790 +0.5 2.1 helix-turn-helix domain-containing protein compare
IAI47_07995 +0.5 3.6 flagellar motor switch protein FliM compare
IAI47_04860 +0.5 3.7 sigma-E factor regulatory protein RseB compare
IAI47_01935 +0.5 2.8 peptidylprolyl isomerase A compare
IAI47_16420 +0.4 3.5 LacI family DNA-binding transcriptional regulator compare
IAI47_04775 +0.4 1.0 SIR2 family protein compare
IAI47_12435 +0.4 1.7 hypothetical protein compare
IAI47_12670 +0.4 2.9 membrane integrity-associated transporter subunit PqiC compare
IAI47_12775 +0.4 3.4 YcbK family protein compare
IAI47_05865 +0.4 3.0 hypothetical protein compare
IAI47_21735 +0.4 2.3 LysR family transcriptional regulator compare
IAI47_10545 +0.4 1.6 hypothetical protein compare
IAI47_11685 +0.4 2.9 DotU family type VI secretion system protein compare
IAI47_11935 +0.4 3.7 two-component system sensor histidine kinase PhoQ compare
IAI47_17970 +0.4 1.7 hypothetical protein compare
IAI47_19050 +0.4 1.5 hypothetical protein compare
IAI47_08285 +0.4 3.2 flagellar transcriptional regulator FlhC compare
IAI47_10340 +0.4 2.5 mannose-6-phosphate isomerase compare
IAI47_19225 +0.4 2.5 PTS sugar transporter subunit IIB compare
IAI47_10555 +0.4 1.7 hypothetical protein compare
IAI47_05855 +0.4 2.7 recombination protein NinG compare
IAI47_14685 +0.4 3.2 cytochrome o ubiquinol oxidase subunit I compare
IAI47_04735 +0.4 2.1 DUF5375 family protein compare
IAI47_01135 +0.4 0.5 hypothetical protein compare
IAI47_08295 +0.4 3.2 flagellar motor protein MotB compare
IAI47_18580 +0.4 3.4 insulinase family protein compare
IAI47_02890 +0.4 2.7 EnvZ/OmpR regulon moderator MzrA compare
IAI47_17155 +0.4 2.7 calcium/sodium antiporter compare
IAI47_12155 +0.4 3.0 flagellar hook assembly protein FlgD compare
IAI47_17120 +0.4 1.3 BolA family iron metabolism protein IbaG compare
IAI47_11690 +0.4 2.8 type VI secretion system baseplate subunit TssK compare
IAI47_04710 +0.4 1.3 hypothetical protein compare
IAI47_12000 +0.4 2.4 thiamine kinase compare
IAI47_02450 +0.4 2.7 septum formation inhibitor Maf compare
IAI47_07985 +0.4 1.8 flagellar biosynthetic protein FliO compare
IAI47_01180 +0.4 1.0 prolyl oligopeptidase family serine peptidase compare
IAI47_12050 +0.4 2.8 cell division protein YceG compare
IAI47_15460 +0.4 1.9 ribonuclease HII compare
IAI47_00490 +0.4 3.3 AsmA family protein compare
IAI47_11830 +0.4 2.4 muramoyltetrapeptide carboxypeptidase compare
IAI47_14700 +0.4 2.5 protoheme IX farnesyltransferase compare
IAI47_08345 +0.4 2.8 flagellar type III secretion system protein FlhB compare
IAI47_07990 +0.4 1.4 flagellar motor switch protein FliN compare
IAI47_04235 +0.4 3.1 RNA polymerase sigma factor RpoS compare
IAI47_06655 +0.4 1.7 1-phosphofructokinase compare
IAI47_05630 +0.4 1.5 hypothetical protein compare
IAI47_10590 +0.4 1.4 translesion error-prone DNA polymerase V autoproteolytic subunit compare
IAI47_17975 +0.4 1.5 YjbF family lipoprotein compare
IAI47_06365 +0.4 1.9 NADH-quinone oxidoreductase subunit B compare
IAI47_16935 +0.4 2.2 NAD-dependent epimerase/dehydratase family protein compare
IAI47_16040 +0.4 2.2 thiamine ABC transporter ATP-binding protein ThiQ compare
IAI47_17560 +0.4 0.5 ROK family transcriptional regulator compare
IAI47_12375 +0.4 0.8 acyl carrier protein compare
IAI47_11695 +0.4 2.5 type VI secretion system lipoprotein TssJ compare
IAI47_16340 +0.4 3.3 multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR compare
IAI47_14690 +0.4 1.9 cytochrome o ubiquinol oxidase subunit III compare
IAI47_18775 +0.4 1.8 hypothetical protein compare
IAI47_08035 +0.4 0.8 flagellar hook-basal body complex protein FliE compare
IAI47_20450 +0.4 2.0 LysR family transcriptional regulator compare
IAI47_02835 +0.4 2.4 DnaA initiator-associating protein DiaA compare
IAI47_06115 +0.4 3.1 long-chain fatty acid transporter FadL compare
IAI47_08135 +0.4 2.5 flagellar export chaperone FliS compare
IAI47_21770 +0.4 2.0 Txe/YoeB family addiction module toxin compare
IAI47_17580 +0.4 2.8 hypothetical protein compare
IAI47_03555 +0.4 1.9 oxidative damage protection protein compare
IAI47_13775 +0.4 1.8 endonuclease VIII compare
IAI47_02600 +0.3 2.8 FtsH protease activity modulator HflK compare
IAI47_15840 +0.3 2.5 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD compare
IAI47_07700 +0.3 1.2 EAL domain-containing protein compare
IAI47_05045 +0.3 2.3 type IV pilus biogenesis/stability protein PilW compare
IAI47_09840 +0.3 2.0 glycosyltransferase family 4 protein compare
IAI47_21600 +0.3 0.9 EamA family transporter compare
IAI47_21470 +0.3 2.0 DUF2778 domain-containing protein compare
IAI47_05510 +0.3 2.4 putative DNA-binding transcriptional regulator compare
IAI47_20250 +0.3 0.7 DeoR family transcriptional regulator compare
IAI47_02475 +0.3 2.2 AaeX family protein compare
IAI47_02395 +0.3 3.0 sodium/pantothenate symporter compare
IAI47_15980 +0.3 2.6 catabolite repressor/activator compare
IAI47_10040 +0.3 1.6 helix-turn-helix transcriptional regulator compare
IAI47_12760 +0.3 2.8 porin OmpF compare
IAI47_08910 +0.3 1.7 DUF1480 family protein compare
IAI47_12160 +0.3 2.4 flagellar basal body rod protein FlgC compare
IAI47_07755 +0.3 1.4 phosphonate C-P lyase system protein PhnG compare
IAI47_04280 +0.3 1.5 alkylphosphonate utilization protein compare
IAI47_12770 +0.3 2.3 MBL fold metallo-hydrolase compare
IAI47_07355 +0.3 1.9 winged helix-turn-helix domain-containing protein compare
IAI47_01670 +0.3 1.9 YhgN family NAAT transporter compare
IAI47_08455 +0.3 1.9 zinc ABC transporter permease subunit ZnuB compare
IAI47_08605 +0.3 1.2 hypothetical protein compare
IAI47_08290 +0.3 2.4 flagellar motor stator protein MotA compare
IAI47_20905 +0.3 1.4 PTS transporter subunit EIIB compare
IAI47_02040 +0.3 2.0 peptidylprolyl isomerase compare
IAI47_14145 +0.3 1.7 hypothetical protein compare
IAI47_04425 +0.3 2.4 23S rRNA pseudouridine(1911/1915/1917) synthase RluD compare
IAI47_06415 +0.3 1.6 NADH-quinone oxidoreductase subunit M compare
IAI47_20430 +0.3 2.4 DASS family sodium-coupled anion symporter compare


Specific Phenotypes

For 4 genes in this experiment

For nitrogen source Ammonium chloride in Pantoea sp. MT58

For nitrogen source Ammonium chloride across organisms