Experiment set4IT021 for Pseudomonas syringae pv. syringae B728a

Compare to:

KB with capsaicin 0.125 mg/ml

200 most important genes:

  gene name fitness t score description  
Psyr_0951 -5.7 -3.9 UBA/THIF-type NAD/FAD binding fold:MoeZ/MoeB compare
Psyr_4740 -4.8 -5.7 thiazole-phosphate synthase compare
Psyr_4340 -4.0 -7.2 phosphomethylpyrimidine kinase, putative compare
Psyr_4341 -3.9 -10.3 thiamine-phosphate diphosphorylase compare
Psyr_1544 -3.4 -5.6 SirA-like protein compare
Psyr_1613 -3.4 -5.9 septum site-determining protein MinC compare
Psyr_4683 -3.3 -4.9 dethiobiotin synthase compare
Psyr_3008 -3.1 -9.7 Undecaprenyl-diphosphatase compare
Psyr_4687 -3.1 -7.4 biotin synthase compare
Psyr_0917 -3.1 -12.8 ABC-2 compare
Psyr_4203 -2.8 -1.9 SsrA-binding protein compare
Psyr_4686 -2.7 -5.8 8-amino-7-oxononanoate synthase compare
Psyr_0918 -2.5 -12.9 ABC transporter compare
Psyr_0831 -2.4 -3.9 Two-component response regulator CbrB compare
Psyr_4991 -2.4 -3.2 hypothetical protein compare
Psyr_0454 -2.4 -6.0 adenosylmethionine-8-amino-7-oxononanoate aminotransferase apoenzyme compare
Psyr_0383 -2.3 -2.2 Twin-arginine translocation protein TatB compare
Psyr_3701 -2.2 -3.8 thioredoxin, putative compare
Psyr_4362 -2.2 -4.3 Rare lipoprotein A compare
Psyr_4684 -2.2 -2.9 biotin synthesis protein BioC compare
Psyr_0826 -2.1 -7.3 glucose-6-phosphate isomerase compare
Psyr_4091 -2.1 -4.1 8-oxo-dGTPase compare
Psyr_4940 -2.0 -3.5 3'(2'),5'-bisphosphate nucleotidase compare
Psyr_0487 -2.0 -3.4 glutathione synthase compare
Psyr_0529 -1.9 -5.3 Glycosyl transferase, group 1 compare
Psyr_2855 -1.8 -4.7 methionine synthase (B12-independent) compare
Psyr_0849 -1.7 -9.4 CDP-diacylglycerol--serine O-phosphatidyltransferase compare
Psyr_3808 -1.7 -3.2 hypothetical protein compare
Psyr_1373 -1.7 -2.9 Peptidoglycan-binding LysM:Peptidase M23B compare
Psyr_2080 -1.7 -7.1 aminodeoxychorismate synthase, subunit I compare
Psyr_1556 -1.7 -3.4 hypothetical protein compare
Psyr_4408 -1.6 -7.2 Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal:Histidine kinase:Histidine kinase compare
Psyr_3179 -1.6 -3.5 DNA translocase FtsK compare
Psyr_0532 -1.6 -5.3 conserved hypothetical protein compare
Psyr_3135 -1.5 -2.6 transcriptional regulator, GntR family compare
Psyr_3954 -1.5 -5.3 GTP-binding protein LepA compare
Psyr_3287 -1.5 -3.0 DNA topoisomerase I compare
Psyr_2980 -1.5 -2.9 UDP-glucose pyrophosphorylase compare
Psyr_4622 -1.4 -4.1 Nucleotidyl transferase compare
Psyr_0574 -1.4 -4.6 protease FtsH subunit HflK compare
Psyr_2292 -1.4 -3.0 L-glutaminase compare
Psyr_1907 -1.4 -2.9 GTP cyclohydrolase I compare
Psyr_0493 -1.4 -3.0 CheW-like protein compare
Psyr_0976 -1.3 -4.0 Malate:quinone-oxidoreductase compare
Psyr_1748 -1.3 -4.0 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Psyr_4407 -1.3 -2.7 phosphoribosylamine--glycine ligase compare
Psyr_0259 -1.3 -3.1 Osmolarity sensor protein envZ compare
Psyr_4089 -1.3 -4.9 PAS compare
Psyr_4750 -1.3 -3.5 cell division ATP-binding protein FtsE compare
Psyr_5133 -1.3 -3.6 tRNA modification GTPase trmE compare
Psyr_3854 -1.3 -1.4 OmpA/MotB compare
Psyr_0571 -1.3 -3.4 tRNA isopentenyltransferase compare
Psyr_0378 -1.2 -6.7 Glycosyl transferase, family 2 compare
Psyr_4140 -1.2 -1.9 Protein of unknown function DUF140 compare
Psyr_0579 -1.2 -7.4 RNAse R compare
Psyr_0303 -1.2 -2.2 Ferredoxin:Oxidoreductase FAD/NAD(P)-binding protein compare
Psyr_4582 -1.2 -1.3 hypothetical protein compare
Psyr_3905 -1.2 -5.8 glycerol kinase compare
Psyr_2854 -1.2 -4.7 conserved hypothetical protein compare
Psyr_0565 -1.2 -5.6 Protein of unknown function UPF0126 compare
Psyr_4087 -1.2 -1.9 Protein of unknown function DUF520 compare
Psyr_0377 -1.2 -5.9 Periplasmic glucan biosynthesis protein, MdoG compare
Psyr_0255 -1.2 -1.5 glutamate-cysteine ligase compare
Psyr_1864 -1.2 -4.1 spermidine synthase compare
Psyr_3906 -1.2 -1.5 regulatory protein, DeoR compare
Psyr_1212 -1.2 -2.2 type III secretion protein HrpO compare
Psyr_5102 -1.2 -3.2 ABC transporter compare
Psyr_4460 -1.2 -2.2 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II compare
Psyr_3116 -1.1 -3.4 transcriptional regulator, CdaR family compare
Psyr_3208 -1.1 -1.9 NADH dehydrogenase subunit M compare
Psyr_3419 -1.1 -4.3 4Fe-4S ferredoxin, iron-sulfur binding protein compare
Psyr_3581 -1.1 -3.6 ribosomal large subunit pseudouridine synthase B compare
Psyr_5135 -1.1 -1.9 Protein of unknown function DUF37 compare
Psyr_4893 -1.1 -2.5 imidazole glycerol phosphate synthase subunit hisF compare
Psyr_4843 -1.1 -4.6 NUDIX hydrolase compare
Psyr_1751 -1.1 -3.9 PpiC-type peptidyl-prolyl cis-trans isomerase compare
Psyr_3193 -1.1 -1.9 Transcription factor jumonji, jmjC compare
Psyr_1910 -1.1 -4.0 VacJ-like lipoprotein compare
Psyr_1667 -1.1 -4.1 Colicin V production protein compare
Psyr_3198 -1.1 -2.1 NADH dehydrogenase subunit B compare
Psyr_0014 -1.1 -3.0 lipid A biosynthesis acyltransferase compare
Psyr_3947 -1.1 -1.7 Methyltransferase, putative compare
Psyr_2471 -1.1 -1.4 hydroxymethylglutaryl-CoA lyase compare
Psyr_0827 -1.0 -3.2 pantothenate synthetase compare
Psyr_1236 -1.0 -2.7 transcriptional regulator, BadM/Rrf2 family compare
Psyr_0535 -1.0 -2.9 toluene tolerance protein, putative compare
Psyr_0464 -1.0 -1.4 hypothetical protein compare
Psyr_2249 -1.0 -1.9 Binding-protein-dependent transport systems inner membrane component compare
Psyr_5078 -1.0 -3.1 conserved hypothetical protein compare
Psyr_1378 -1.0 -1.6 RecA protein compare
Psyr_3555 -1.0 -1.2 aspartate kinase compare
Psyr_3585 -1.0 -2.8 Sua5/YciO/YrdC/YwlC compare
Psyr_1408 -1.0 -2.3 Holliday junction endonuclease RuvC compare
Psyr_0524 -1.0 -3.0 Lipopolysaccharide kinase compare
Psyr_1953 -1.0 -0.9 conserved hypothetical protein compare
Psyr_5067 -1.0 -4.0 conserved hypothetical protein compare
Psyr_1581 -1.0 -3.3 conserved hypothetical protein compare
Psyr_1277 -1.0 -1.9 formate-dependent phosphoribosylglycinamide formyltransferase compare
Psyr_3691 -1.0 -4.4 conserved hypothetical protein compare
Psyr_1930 -0.9 -3.0 hypothetical protein compare
Psyr_3867 -0.9 -2.1 hypothetical protein compare
Psyr_1371 -0.9 -4.0 5'-nucleotidase / exopolyphosphatase / 3'-nucleotidase compare
Psyr_3627 -0.9 -1.8 OsmC-like protein compare
Psyr_3266 -0.9 -2.1 Oxidoreductase, N-terminal:Oxidoreductase, C-terminal compare
Psyr_4194 -0.9 -2.7 DnaJ central region:Heat shock protein DnaJ, N-terminal:Chaperone DnaJ, C-terminal compare
Psyr_0680 -0.9 -2.9 DNA helicase/exodeoxyribonuclease V, gamma subunit compare
Psyr_2095 -0.9 -3.6 Conserved TM helix compare
Psyr_1269 -0.9 -2.6 phosphoribosylformylglycinamidine synthase compare
Psyr_4424 -0.9 -4.6 Propeptide, PepSY amd peptidase M4:PepSY-associated TM helix compare
Psyr_3952 -0.9 -2.8 conserved hypothetical protein compare
Psyr_4623 -0.9 -5.6 Aminoglycoside phosphotransferase compare
Psyr_3342 -0.9 -1.8 conserved hypothetical protein compare
Psyr_0435 -0.9 -0.7 membrane protein, putative compare
Psyr_1880 -0.9 -4.0 Cytochrome c, class I compare
Psyr_2285 -0.9 -1.7 Twin-arginine translocation pathway signal compare
Psyr_1460 -0.9 -3.3 hypothetical protein compare
Psyr_3020 -0.9 -2.1 precorrin-4 C11-methyltransferase compare
Psyr_0276 -0.9 -2.5 zinc uptake regulation protein, putative compare
Psyr_4361 -0.8 -2.5 penicillin-binding protein 6, Serine peptidase, MEROPS family S11 compare
Psyr_3034 -0.8 -2.2 conserved hypothetical protein compare
Psyr_1108 -0.8 -4.8 glyceraldehyde-3-phosphate dehydrogenase compare
Psyr_4512 -0.8 -3.8 putative phage-related protein compare
Psyr_3552 -0.8 -2.1 Divalent cation transporter compare
Psyr_0475 -0.8 -2.2 Protein of unknown function YGGT compare
Psyr_0635 -0.8 -2.0 MaoC-like dehydratase compare
Psyr_3121 -0.8 -1.8 Protein of unknown function DUF1345 compare
Psyr_2578 -0.8 -2.1 regulatory protein, LuxR compare
Psyr_1530 -0.8 -2.3 hypothetical protein compare
Psyr_4830 -0.8 -1.4 Binding-protein-dependent transport systems inner membrane component compare
Psyr_1984 -0.8 -2.8 3-isopropylmalate dehydratase, small subunit compare
Psyr_0281 -0.8 -2.5 ABC transporter compare
Psyr_2970 -0.8 -3.5 TPR repeat protein:TPR repeat protein compare
Psyr_1749 -0.8 -3.9 ATP-dependent proteinase, Serine peptidase, MEROPS family S16 compare
Psyr_2134 -0.8 -1.4 protein of unknown function DUF903 compare
Psyr_3904 -0.8 -3.8 Major intrinsic protein compare
Psyr_4593 -0.8 -2.3 sigma factor domain protein compare
Psyr_1198 -0.8 -1.5 type III secretion protein HrpF compare
Psyr_3567 -0.8 -1.4 L-arginine ABC transporter ATP-binding protein / L-ornithine ABC transporter ATP-binding protein compare
Psyr_1410 -0.8 -1.9 Holliday junction DNA helicase RuvB compare
Psyr_2538 -0.8 -1.7 Binding-protein-dependent transport systems inner membrane component compare
Psyr_RNA28 -0.8 -1.4 tRNA-Val compare
Psyr_4092 -0.8 -3.7 Glutathione S-transferase, N-terminal compare
Psyr_0549 -0.8 -1.6 Metallophosphoesterase compare
Psyr_1614 -0.8 -2.0 lipid A biosynthesis acyltransferase compare
Psyr_5130 -0.8 -4.0 chromosome segregation ATPase compare
Psyr_4158 -0.8 -5.0 conserved hypothetical protein compare
Psyr_2251 -0.8 -1.5 Phosphonate metabolism PhnG compare
Psyr_2312 -0.8 -1.3 Protein of unknown function DUF24 compare
Psyr_3014 -0.8 -2.1 protoporphyrin IX magnesium-chelatase compare
Psyr_1268 -0.8 -3.6 extracellular solute-binding protein, family 3:SLT compare
Psyr_1227 -0.8 -1.6 Queuosine biosynthesis protein compare
Psyr_1650 -0.8 -2.0 aminodeoxychorismate lyase apoprotein compare
Psyr_0393 -0.8 -2.5 Protein of unknown function DUF971 compare
Psyr_3013 -0.8 -1.3 magnesium chelatase subunit ChlD compare
Psyr_2617 -0.7 -1.3 Secretion protein HlyD compare
Psyr_2213 -0.7 -2.8 transcriptional regulator, AraC family compare
Psyr_0736 -0.7 -2.2 umuC protein compare
Psyr_1989 -0.7 -2.8 galactonate dehydratase compare
Psyr_4294 -0.7 -2.2 Histone deacetylase family protein compare
Psyr_1187 -0.7 -1.8 type III chaperone protein ShcE compare
Psyr_3162 -0.7 -1.9 Metalloprotease inhibitor/calysin compare
Psyr_3932 -0.7 -1.8 Cobalamin synthesis protein/P47K:Cobalamin synthesis protein/P47K compare
Psyr_4380 -0.7 -1.6 translation initiation factor 1 (eIF-1/SUI1) compare
Psyr_2255 -0.7 -1.9 ABC transporter compare
Psyr_1780 -0.7 -1.5 transcriptional regulator, TetR family compare
Psyr_0835 -0.7 -2.8 transcriptional regulator, TraR/DksA family compare
Psyr_1018 -0.7 -2.2 Protein of unknown function DUF1244 compare
Psyr_3202 -0.7 -1.3 NADH dehydrogenase subunit G compare
Psyr_1929 -0.7 -2.8 hypothetical protein compare
Psyr_2151 -0.7 -1.6 monosaccharide ABC transporter substrate-binding protein, CUT2 family compare
Psyr_0920 -0.7 -5.8 Glycosyl transferase, group 1 compare
Psyr_0724 -0.7 -1.8 conserved hypothetical protein compare
Psyr_1193 -0.7 -1.6 type III helper protein HrpZ1 compare
Psyr_2936 -0.7 -2.4 conserved hypothetical protein compare
Psyr_2271 -0.7 -3.3 membrane protein, putative compare
Psyr_0699 -0.7 -1.8 CDS compare
Psyr_0832 -0.7 -3.8 Two-component sensor kinase CbrA compare
Psyr_0137 -0.7 -1.2 outer membrane transport energization protein ExbD compare
Psyr_0184 -0.7 -1.9 Protein of unknown function DUF484 compare
Psyr_3115 -0.7 -2.6 Glycerate kinase compare
Psyr_2927 -0.7 -1.3 transcriptional regulator, TetR family compare
Psyr_4627 -0.7 -1.5 dimethyladenosine transferase compare
Psyr_3741 -0.7 -2.3 Polyphosphate:AMP phosphotransferase compare
Psyr_4887 -0.7 -4.5 Peptidase S41A, C-terminal protease compare
Psyr_4118 -0.6 -3.1 Glutathione S-transferase, N-terminal:Glutathione S-transferase, C-terminal compare
Psyr_0511 -0.6 -1.7 conserved hypothetical protein compare
Psyr_0919 -0.6 -4.4 Chromosome segregation ATPase-like protein compare
Psyr_1816 -0.6 -2.1 transcriptional regulator, GntR family compare
Psyr_4139 -0.6 -2.9 Mce4/Rv3499c/MTV023.06c protein compare
Psyr_4437 -0.6 -2.8 hypothetical protein compare
Psyr_0947 -0.6 -3.5 TPR repeat protein:TPR repeat protein compare
Psyr_0318 -0.6 -2.2 cell division protein ZapA compare
Psyr_2344 -0.6 -2.1 CDS compare
Psyr_0034 -0.6 -2.3 tryptophan synthase, beta chain compare
Psyr_5132 -0.6 -1.0 Glucose-inhibited division protein A subfamily compare
Psyr_1747 -0.6 -2.1 ATP-dependent Clp protease proteolytic subunit ClpP compare
Psyr_1528 -0.6 -2.0 Arc-like DNA binding protein compare
Psyr_1294 -0.6 -1.8 regulatory protein, LuxR:Response regulator receiver compare
Psyr_0817 -0.6 -2.4 N-acetylmuramoyl-L-alanine amidase, family 2 compare
Psyr_1152 -0.6 -1.1 transcriptional regulator, ArsR family compare


Specific Phenotypes

None in this experiment

For Pseudomonas syringae pv. syringae B728a in stress experiments

For stress capsaicin across organisms