Experiment set4IT021 for Pseudomonas fluorescens SBW25-INTG

Compare to:

L-Arabinose carbon source; with MOPS

200 most important genes:

  gene name fitness t score description  
PFLU_RS03645 -6.0 -4.1 tetratricopeptide repeat protein compare
PFLU_RS01645 -5.8 -4.0 S41 family peptidase compare
PFLU_RS23920 -5.6 -3.8 septation protein A compare
PFLU_RS28645 -5.5 -13.8 phosphoenolpyruvate--protein phosphotransferase compare
PFLU_RS04715 -5.5 -3.8 D-alanine--D-alanine ligase compare
PFLU_RS14550 -5.1 -3.5 UTP--glucose-1-phosphate uridylyltransferase GalU compare
PFLU_RS24485 -4.6 -14.8 hypothetical protein compare
PFLU_RS24825 -4.6 -3.2 Fe-S cluster assembly protein IscX compare
PFLU_RS22095 -4.4 -15.7 GTP diphosphokinase compare
PFLU_RS21240 -4.2 -2.3 hypothetical protein compare
PFLU_RS02365 -4.2 -12.5 glycosyltransferase compare
PFLU_RS01605 -4.2 -9.4 imidazoleglycerol-phosphate dehydratase HisB compare
PFLU_RS28535 -4.2 -13.0 dihydroxy-acid dehydratase compare
PFLU_RS01620 -4.2 -6.4 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
PFLU_RS02490 -4.2 -11.5 phosphoserine phosphatase SerB compare
PFLU_RS27440 -4.1 -6.3 nucleotidyltransferase family protein compare
PFLU_RS21300 -4.1 -7.3 cysteine hydrolase compare
PFLU_RS29095 -4.1 -26.4 polyphosphate kinase 1 compare
PFLU_RS11635 -4.0 -13.5 hypothetical protein conserved
PFLU_RS25640 -4.0 -9.3 ketol-acid reductoisomerase compare
PFLU_RS26770 -4.0 -16.5 DedA family protein compare
PFLU_RS26545 -4.0 -12.5 sel1 repeat family protein compare
PFLU_RS01900 -4.0 -6.1 phosphoribosyl-AMP cyclohydrolase compare
PFLU_RS27620 -3.9 -20.9 acyl-CoA dehydrogenase compare
PFLU_RS28650 -3.9 -7.4 RNA pyrophosphohydrolase compare
PFLU_RS24125 -3.8 -3.7 cold-shock protein compare
PFLU_RS07650 -3.7 -15.8 fatty acid oxidation complex subunit alpha FadB compare
PFLU_RS04470 -3.7 -11.1 histidinol dehydrogenase compare
PFLU_RS04465 -3.7 -10.1 ATP phosphoribosyltransferase compare
PFLU_RS04385 -3.6 -12.4 RNase adapter RapZ compare
PFLU_RS22105 -3.6 -4.3 cysteine synthase CysM compare
PFLU_RS12980 -3.6 -8.6 nitrite/sulfite reductase compare
PFLU_RS25815 -3.6 -2.2 transcription termination/antitermination protein NusA compare
PFLU_RS11640 -3.5 -5.3 aldehyde dehydrogenase (NADP(+)) conserved
PFLU_RS12975 -3.5 -5.3 DUF934 domain-containing protein compare
PFLU_RS23590 -3.5 -3.1 gluconokinase compare
PFLU_RS01610 -3.5 -12.5 imidazole glycerol phosphate synthase subunit HisH compare
PFLU_RS25750 -3.5 -6.6 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PFLU_RS26735 -3.5 -11.8 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PFLU_RS25715 -3.4 -8.5 RNA polymerase-binding protein DksA compare
PFLU_RS04435 -3.4 -2.3 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
PFLU_RS20540 -3.4 -12.1 phosphoribosylanthranilate isomerase compare
PFLU_RS00175 -3.4 -6.8 tryptophan synthase subunit alpha compare
PFLU_RS04070 -3.4 -4.0 peptide chain release factor 3 compare
PFLU_RS25755 -3.4 -2.3 pantoate--beta-alanine ligase compare
PFLU_RS09980 -3.3 -18.4 peptidase S41 compare
PFLU_RS11625 -3.3 -11.7 dihydroxy-acid dehydratase conserved
PFLU_RS25735 -3.3 -5.9 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS08065 -3.3 -10.6 N-acetylmuramic acid 6-phosphate phosphatase MupP compare
PFLU_RS28695 -3.3 -7.5 phosphoglycerate dehydrogenase compare
PFLU_RS04430 -3.3 -5.0 ATP-binding cassette domain-containing protein compare
PFLU_RS00870 -3.3 -2.2 hypothetical protein compare
PFLU_RS00180 -3.3 -8.6 tryptophan synthase subunit beta compare
PFLU_RS27370 -3.2 -12.6 anthranilate phosphoribosyltransferase compare
PFLU_RS04445 -3.2 -5.8 ABC transporter substrate-binding protein compare
PFLU_RS20565 -3.2 -15.2 3-isopropylmalate dehydrogenase compare
PFLU_RS14810 -3.2 -2.9 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE compare
PFLU_RS11630 -3.2 -13.6 MFS transporter conserved
PFLU_RS07785 -3.2 -8.2 VacJ family lipoprotein compare
PFLU_RS02590 -3.2 -9.1 ATP phosphoribosyltransferase regulatory subunit compare
PFLU_RS04440 -3.2 -6.4 outer membrane lipid asymmetry maintenance protein MlaD compare
PFLU_RS06320 -3.2 -4.7 OmpH family outer membrane protein compare
PFLU_RS01895 -3.1 -7.3 phosphoribosyl-ATP diphosphatase compare
PFLU_RS22595 -3.1 -3.7 OmpA family protein compare
PFLU_RS03770 -3.1 -14.3 sulfate adenylyltransferase subunit CysN compare
PFLU_RS28655 -3.1 -14.4 HAD family hydrolase compare
PFLU_RS07640 -3.1 -10.8 universal stress protein compare
PFLU_RS08160 -3.0 -6.8 sugar transferase compare
PFLU_RS22520 -3.0 -2.1 GntR family transcriptional regulator compare
PFLU_RS20580 -3.0 -13.4 3-isopropylmalate dehydratase large subunit compare
PFLU_RS04325 -3.0 -15.6 ribonuclease G compare
PFLU_RS08165 -3.0 -2.0 acyl carrier protein compare
PFLU_RS28965 -3.0 -10.9 5-formyltetrahydrofolate cyclo-ligase compare
PFLU_RS09055 -2.9 -2.0 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
PFLU_RS04565 -2.9 -1.3 TMEM165/GDT1 family protein compare
PFLU_RS29885 -2.9 -10.5 LysR family transcriptional regulator compare
PFLU_RS24765 -2.9 -19.4 2-isopropylmalate synthase compare
PFLU_RS20330 -2.9 -4.2 cold-shock protein compare
PFLU_RS07255 -2.9 -4.6 sulfurtransferase TusA family protein compare
PFLU_RS01625 -2.9 -2.8 imidazole glycerol phosphate synthase subunit HisF compare
PFLU_RS27445 -2.9 -15.4 phosphotransferase compare
PFLU_RS20285 -2.8 -8.1 MerR family transcriptional regulator compare
PFLU_RS26640 -2.8 -10.7 septal ring lytic transglycosylase RlpA family protein compare
PFLU_RS27365 -2.8 -8.7 indole-3-glycerol phosphate synthase TrpC compare
PFLU_RS28725 -2.8 -11.6 DUF2059 domain-containing protein compare
PFLU_RS02370 -2.8 -8.8 glycosyltransferase compare
PFLU_RS18505 -2.8 -12.2 uroporphyrinogen-III C-methyltransferase compare
PFLU_RS31275 -2.8 -1.7 hypothetical protein compare
PFLU_RS18645 -2.7 -1.9 NADH-quinone oxidoreductase subunit NuoH compare
PFLU_RS24015 -2.7 -2.8 cold-shock protein compare
PFLU_RS28315 -2.7 -1.2 response regulator compare
PFLU_RS20765 -2.7 -2.2 hypothetical protein compare
PFLU_RS24785 -2.7 -11.0 outer membrane protein assembly factor BamB compare
PFLU_RS25730 -2.6 -16.9 PAS domain S-box protein compare
PFLU_RS04650 -2.6 -15.2 ABC transporter substrate-binding protein compare
PFLU_RS01585 -2.6 -8.4 oxidative damage protection protein compare
PFLU_RS03980 -2.6 -8.2 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD compare
PFLU_RS08155 -2.6 -3.5 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
PFLU_RS02000 -2.6 -19.0 penicillin-binding protein 1A compare
PFLU_RS00535 -2.6 -1.9 DUF1127 domain-containing protein compare
PFLU_RS27305 -2.6 -8.2 anhydro-N-acetylmuramic acid kinase compare
PFLU_RS28165 -2.5 -12.5 methylenetetrahydrofolate reductase [NAD(P)H] compare
PFLU_RS04315 -2.5 -3.8 rod shape-determining protein MreD compare
PFLU_RS18640 -2.5 -1.7 NADH-quinone oxidoreductase subunit NuoG compare
PFLU_RS22740 -2.5 -6.6 phosphoadenylyl-sulfate reductase compare
PFLU_RS12145 -2.5 -1.9 nuclear transport factor 2 family protein compare
PFLU_RS29875 -2.5 -12.1 oxaloacetate decarboxylase subunit alpha compare
PFLU_RS01965 -2.5 -1.7 ATP-dependent protease subunit HslV compare
PFLU_RS04220 -2.5 -8.7 FadR family transcriptional regulator compare
PFLU_RS19165 -2.4 -5.1 ATP-dependent Clp protease ATP-binding subunit ClpX compare
PFLU_RS04930 -2.4 -11.3 PhoH family protein compare
PFLU_RS03765 -2.4 -9.0 sulfate adenylyltransferase subunit CysD compare
PFLU_RS03970 -2.4 -7.7 carboxylating nicotinate-nucleotide diphosphorylase compare
PFLU_RS21495 -2.4 -3.5 TlpA family protein disulfide reductase compare
PFLU_RS20515 -2.4 -3.2 amidophosphoribosyltransferase compare
PFLU_RS18620 -2.4 -1.6 NADH-quinone oxidoreductase subunit B compare
PFLU_RS00415 -2.4 -1.6 thiol:disulfide interchange protein DsbA/DsbL compare
PFLU_RS29880 -2.3 -9.7 acetyl-CoA carboxylase biotin carboxylase subunit compare
PFLU_RS25190 -2.3 -2.5 hypothetical protein compare
PFLU_RS02180 -2.3 -1.4 thioredoxin TrxC compare
PFLU_RS18655 -2.3 -1.6 NADH-quinone oxidoreductase subunit J compare
PFLU_RS15410 -2.3 -2.6 zinc-dependent alcohol dehydrogenase family protein compare
PFLU_RS22070 -2.3 -5.7 phosphoribosylglycinamide formyltransferase compare
PFLU_RS18665 -2.2 -1.5 NADH-quinone oxidoreductase subunit L compare
PFLU_RS24475 -2.2 -15.3 AmpG family muropeptide MFS transporter compare
PFLU_RS13760 -2.2 -3.0 hypothetical protein compare
PFLU_RS00465 -2.2 -9.4 spore maturation protein compare
PFLU_RS18615 -2.2 -2.5 NADH-quinone oxidoreductase subunit A compare
PFLU_RS02460 -2.2 -9.6 alpha/beta fold hydrolase compare
PFLU_RS16290 -2.1 -4.9 hypothetical protein compare
PFLU_RS20575 -2.1 -4.8 3-isopropylmalate dehydratase small subunit compare
PFLU_RS29560 -2.1 -1.6 hypothetical protein compare
PFLU_RS14820 -2.1 -5.7 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase compare
PFLU_RS17615 -2.1 -2.0 DeoR/GlpR transcriptional regulator compare
PFLU_RS18635 -2.1 -2.8 NADH-quinone oxidoreductase subunit NuoF compare
PFLU_RS00310 -2.1 -1.5 twin transmembrane helix small protein compare
PFLU_RS29735 -2.1 -9.0 HlyC/CorC family transporter compare
PFLU_RS24025 -2.1 -9.6 quinolinate synthase NadA compare
PFLU_RS28765 -2.1 -8.5 polyamine ABC transporter ATP-binding protein compare
PFLU_RS04660 -2.1 -6.1 division/cell wall cluster transcriptional repressor MraZ compare
PFLU_RS01380 -2.1 -4.7 GMP/IMP nucleotidase compare
PFLU_RS04150 -2.1 -4.6 DUF1043 family protein compare
PFLU_RS13010 -2.1 -5.0 Fe-S biogenesis protein NfuA compare
PFLU_RS13540 -2.1 -4.4 3-phosphoshikimate 1-carboxyvinyltransferase compare
PFLU_RS28760 -2.1 -10.1 ABC transporter permease subunit compare
PFLU_RS06555 -2.1 -8.3 OmpA family protein compare
PFLU_RS25920 -2.0 -3.2 outer membrane protein assembly factor BamE compare
PFLU_RS23310 -2.0 -8.9 arginine/ornithine succinyltransferase subunit alpha compare
PFLU_RS12580 -2.0 -6.8 MurR/RpiR family transcriptional regulator compare
PFLU_RS26020 -2.0 -8.6 TetR/AcrR family transcriptional regulator compare
PFLU_RS30105 -2.0 -3.0 DeoR family transcriptional regulator compare
PFLU_RS18625 -2.0 -4.6 NADH-quinone oxidoreductase subunit C/D compare
PFLU_RS01285 -2.0 -1.4 HAMP domain-containing protein compare
PFLU_RS07525 -2.0 -2.7 cyclic nucleotide-binding domain-containing protein compare
PFLU_RS26290 -2.0 -0.9 2Fe-2S iron-sulfur cluster binding domain-containing protein compare
PFLU_RS26595 -2.0 -1.4 lipoprotein compare
PFLU_RS25360 -2.0 -5.3 glutamate 5-kinase compare
PFLU_RS20545 -2.0 -5.8 tRNA pseudouridine(38-40) synthase TruA compare
PFLU_RS28690 -2.0 -10.7 FAD-binding oxidoreductase compare
PFLU_RS09575 -2.0 -3.4 FadR family transcriptional regulator compare
PFLU_RS14430 -2.0 -2.4 arsenate reductase ArsC compare
PFLU_RS18885 -1.9 -2.0 peptidyl-prolyl cis-trans isomerase compare
PFLU_RS29550 -1.9 -7.4 ATP-dependent DNA helicase RecG compare
PFLU_RS07810 -1.9 -11.0 tRNA dihydrouridine(20/20a) synthase DusA compare
PFLU_RS24085 -1.9 -3.4 Holliday junction branch migration DNA helicase RuvB compare
PFLU_RS08370 -1.9 -3.5 hypothetical protein compare
PFLU_RS29515 -1.9 -8.4 RidA family protein compare
PFLU_RS12915 -1.9 -2.2 methyltransferase domain-containing protein compare
PFLU_RS25800 -1.9 -3.4 tRNA pseudouridine(55) synthase TruB compare
PFLU_RS28325 -1.9 -7.0 energy transducer TonB compare
PFLU_RS28785 -1.9 -9.2 glutamine synthetase compare
PFLU_RS18670 -1.9 -1.8 NADH-quinone oxidoreductase subunit M compare
PFLU_RS24090 -1.9 -4.5 Holliday junction branch migration protein RuvA compare
PFLU_RS17950 -1.9 -1.9 hypothetical protein compare
PFLU_RS23185 -1.9 -9.5 protein-glutamate O-methyltransferase CheR compare
PFLU_RS28775 -1.9 -9.9 polyamine ABC transporter substrate-binding protein compare
PFLU_RS01960 -1.9 -1.3 ATP-dependent protease ATPase subunit HslU compare
PFLU_RS01320 -1.9 -7.5 phosphoenolpyruvate carboxykinase compare
PFLU_RS31805 -1.9 -2.0 hypothetical protein compare
PFLU_RS29490 -1.8 -7.6 ribonuclease PH compare
PFLU_RS07655 -1.8 -3.8 acetyl-CoA C-acyltransferase FadA compare
PFLU_RS01485 -1.8 -9.8 cellulase compare
PFLU_RS24695 -1.8 -1.1 PTS glucose transporter subunit IIB compare
PFLU_RS13015 -1.8 -4.5 precorrin-4 C(11)-methyltransferase compare
PFLU_RS25225 -1.8 -6.5 disulfide bond formation protein B compare
PFLU_RS28755 -1.8 -6.8 ABC transporter permease subunit compare
PFLU_RS24590 -1.8 -2.2 cytochrome c assembly protein compare
PFLU_RS03610 -1.8 -5.9 redox-regulated ATPase YchF compare
PFLU_RS15045 -1.8 -5.0 glycosyl hydrolase compare
PFLU_RS18675 -1.8 -1.2 NADH-quinone oxidoreductase subunit NuoN compare
PFLU_RS02280 -1.8 -8.8 bifunctional [glutamate--ammonia ligase]-adenylyl-L-tyrosine phosphorylase/[glutamate--ammonia-ligase] adenylyltransferase compare
PFLU_RS06650 -1.8 -3.3 DUF2288 domain-containing protein compare
PFLU_RS18735 -1.8 -1.3 hypothetical protein compare
PFLU_RS18410 -1.7 -3.4 response regulator compare
PFLU_RS04015 -1.7 -2.8 1-phosphofructokinase compare
PFLU_RS21315 -1.7 -7.2 GTP cyclohydrolase I FolE compare
PFLU_RS28955 -1.7 -7.0 TIGR02449 family protein compare
PFLU_RS23065 -1.7 -7.8 phosphate acyltransferase PlsX compare
PFLU_RS10765 -1.7 -7.7 UvrY/SirA/GacA family response regulator transcription factor compare
PFLU_RS27475 -1.7 -4.9 symmetrical bis(5'-nucleosyl)-tetraphosphatase compare


Specific Phenotypes

For 18 genes in this experiment

For carbon source L-Arabinose in Pseudomonas fluorescens SBW25-INTG

For carbon source L-Arabinose across organisms