Experiment set4IT021 for Methanococcus maripaludis JJ

Compare to:

H2 N-free with 10mM D-glucosamine

200 most important genes:

  gene name fitness t score description  
MMJJ_RS04485 -5.3 -8.1 riboflavin synthase compare
MMJJ_RS01810 -5.1 -2.1 methyl coenzyme M reductase system, component A2 compare
MMJJ_RS00580 -5.0 -2.0 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase subunit CofG compare
MMJJ_RS04475 -4.9 -3.4 3,4-dihydroxy-2-butanone-4-phosphate synthase compare
MMJJ_RS00570 -4.8 -1.9 ribonuclease P compare
MMJJ_RS03270 -4.7 -2.2 ribosome biogenesis/translation initiation ATPase RLI compare
MMJJ_RS06875 -4.7 -2.4 hypothetical protein compare
MMJJ_RS05450 -4.6 -9.7 TIGR03576 family pyridoxal phosphate-dependent enzyme compare
MMJJ_RS04155 -4.4 -6.7 hypothetical protein compare
MMJJ_RS05115 -4.4 -6.1 P-II family nitrogen regulator compare
MMJJ_RS07950 -4.3 -2.7 4Fe-4S binding protein compare
MMJJ_RS09375 -4.3 -1.7 hypothetical protein compare
MMJJ_RS00275 -4.3 -2.2 coenzyme F420-0:L-glutamate ligase compare
MMJJ_RS03760 -4.3 -2.9 hydrogenase maturation nickel metallochaperone HypA compare
MMJJ_RS03055 -4.2 -3.0 hypothetical protein compare
MMJJ_RS06930 -4.2 -2.4 type II methionyl aminopeptidase compare
MMJJ_RS06510 -4.2 -2.4 LL-diaminopimelate aminotransferase compare
MMJJ_RS05445 -4.1 -1.9 2-oxoacid:acceptor oxidoreductase subunit alpha compare
MMJJ_RS05590 -4.1 -1.9 homoserine dehydrogenase compare
MMJJ_RS05995 -4.1 -2.1 ATP-binding cassette domain-containing protein compare
MMJJ_RS01935 -4.0 -3.9 O-phosphoseryl-tRNA(Sec) selenium transferase compare
MMJJ_RS01750 -4.0 -2.3 ferrous iron transport protein A compare
MMJJ_RS06390 -4.0 -1.8 NADPH-dependent F420 reductase compare
MMJJ_RS07360 -3.9 -1.6 TIGR00269 family protein compare
MMJJ_RS06155 -3.9 -5.3 phosphatidylglycerophosphatase A compare
MMJJ_RS07720 -3.9 -1.8 UPF0058 family protein compare
MMJJ_RS07725 -3.9 -5.3 DNA primase DnaG compare
MMJJ_RS03810 -3.8 -3.1 AIR synthase-related protein compare
MMJJ_RS04930 -3.8 -16.5 MFS transporter compare
MMJJ_RS05650 -3.7 -2.5 formylmethanofuran dehydrogenase subunit B compare
MMJJ_RS08080 -3.7 -8.5 TIGR00300 family protein compare
MMJJ_RS03110 -3.7 -3.6 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))- methylthiotransferase compare
MMJJ_RS08535 -3.7 -3.2 NOL1/NOP2/sun family putative RNA methylase compare
MMJJ_RS05070 -3.7 -1.9 DNA primase catalytic subunit PriS compare
MMJJ_RS04800 -3.7 -6.1 2-phospho-L-lactate guanylyltransferase compare
MMJJ_RS06485 -3.6 -2.4 phosphoglycerate kinase compare
MMJJ_RS04970 -3.6 -1.7 DUF655 domain-containing protein compare
MMJJ_RS04685 -3.6 -8.0 carbamoyltransferase HypF compare
MMJJ_RS03580 -3.6 -3.1 TIGR00303 family protein compare
MMJJ_RS06490 -3.6 -2.2 methanogenesis marker 2 protein compare
MMJJ_RS08660 -3.6 -2.5 acetylornithine transaminase compare
MMJJ_RS07410 -3.6 -3.5 methanogenesis marker protein Mmp4/MtxX compare
MMJJ_RS03840 -3.6 -2.5 DHH family phosphoesterase compare
MMJJ_RS08340 -3.5 -5.4 archaeoflavoprotein AfpA compare
MMJJ_RS00450 -3.5 -1.6 DUF126 domain-containing protein compare
MMJJ_RS07350 -3.5 -2.3 4Fe-4S binding protein compare
MMJJ_RS02090 -3.5 -5.8 tyramine--L-glutamate ligase compare
MMJJ_RS04675 -3.5 -4.2 thiamine pyrophosphate-binding protein compare
MMJJ_RS02045 -3.5 -2.9 molybdenum cofactor guanylyltransferase compare
MMJJ_RS05260 -3.5 -6.2 ATP-grasp domain-containing protein compare
MMJJ_RS07005 -3.5 -5.4 transcription factor S compare
MMJJ_RS08035 -3.5 -6.5 cobalt-precorrin-7 (C(5))-methyltransferase compare
MMJJ_RS09175 -3.5 -1.1 anthranilate synthase component I compare
MMJJ_RS07000 -3.5 -1.6 TrkH family potassium uptake protein compare
MMJJ_RS05930 -3.5 -1.8 cell division protein SepF compare
MMJJ_RS03095 -3.4 -1.9 bifunctional N(6)-L-threonylcarbamoyladenine synthase/serine/threonine protein kinase compare
MMJJ_RS03170 -3.4 -8.6 DUF5612 domain-containing protein compare
MMJJ_RS03615 -3.4 -3.1 cobalt-precorrin-8 methylmutase compare
MMJJ_RS06840 -3.4 -2.3 nickel-dependent hydrogenase large subunit compare
MMJJ_RS02920 -3.4 -2.0 30S ribosomal protein S27ae compare
MMJJ_RS03295 -3.3 -14.0 PHP domain-containing protein compare
MMJJ_RS03230 -3.3 -4.1 NAD(P)/FAD-dependent oxidoreductase compare
MMJJ_RS00205 -3.3 -4.4 adenosylcobinamide-phosphate synthase CbiB compare
MMJJ_RS05225 -3.2 -1.0 Gar1/Naf1 family protein compare
MMJJ_RS06220 -3.2 -5.5 polyamine aminopropyltransferase compare
MMJJ_RS06695 -3.2 -3.0 amidohydrolase compare
MMJJ_RS03005 -3.2 -3.1 Ni-sirohydrochlorin a,c-diamide reductive cyclase catalytic subunit compare
MMJJ_RS04975 -3.2 -1.7 glycosyltransferase family 4 protein compare
MMJJ_RS01355 -3.2 -2.2 UDP-N-acetyl-D-mannosamine dehydrogenase compare
MMJJ_RS01360 -3.2 -1.8 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
MMJJ_RS06175 -3.2 -2.2 DUF1743 domain-containing protein compare
MMJJ_RS01600 -3.2 -2.6 radical SAM protein compare
MMJJ_RS00355 -3.2 -2.7 ribonuclease P protein component 4 compare
MMJJ_RS03190 -3.2 -2.1 phosphopyruvate hydratase compare
MMJJ_RS07705 -3.2 -3.0 GTP-binding protein EngB compare
MMJJ_RS05720 -3.2 -1.9 glutamine--fructose-6-phosphate transaminase (isomerizing) compare
MMJJ_RS03240 -3.1 -2.3 histone family protein compare
MMJJ_RS08095 -3.1 -3.7 cobyric acid synthase CobQ compare
MMJJ_RS00425 -3.1 -3.4 hypothetical protein compare
MMJJ_RS06180 -3.1 -2.6 tryptophan--tRNA ligase compare
MMJJ_RS07245 -3.1 -4.2 amidohydrolase family protein compare
MMJJ_RS04565 -3.1 -3.6 sirohydrochlorin nickelochelatase compare
MMJJ_RS03895 -3.1 -3.6 hydrogenase expression/formation protein HypE compare
MMJJ_RS03160 -3.0 -7.2 winged helix-turn-helix transcriptional regulator compare
MMJJ_RS03785 -3.0 -1.9 hypothetical protein compare
MMJJ_RS03060 -3.0 -3.2 methanogenesis marker 7 protein compare
MMJJ_RS01880 -3.0 -2.7 RlmE family RNA methyltransferase compare
MMJJ_RS07715 -3.0 -3.1 UbiD family decarboxylase compare
MMJJ_RS04520 -3.0 -6.3 coenzyme F430 synthase compare
MMJJ_RS08155 -3.0 -4.0 cobalt-precorrin-5B (C(1))-methyltransferase CbiD compare
MMJJ_RS00695 -3.0 -11.6 P-II family nitrogen regulator compare
MMJJ_RS00675 -3.0 -13.8 nitrogenase compare
MMJJ_RS03820 -3.0 -4.0 hydrogenase formation protein HypD compare
MMJJ_RS05330 -3.0 -1.8 DNA polymerase II large subunit compare
MMJJ_RS05575 -2.9 -3.8 2-amino-5-formylamino-6-ribosylaminopyrimidin- 4(3H)-one 5'-monophosphate deformylase compare
MMJJ_RS00125 -2.9 -1.8 KEOPS complex subunit Cgi121 compare
MMJJ_RS05110 -2.9 -15.4 ammonium transporter compare
MMJJ_RS08320 -2.9 -2.4 CDP-diacylglycerol--serine O-phosphatidyltransferase compare
MMJJ_RS05595 -2.8 -2.8 hypothetical protein compare
MMJJ_RS05490 -2.8 -2.5 imidazole glycerol phosphate synthase subunit HisF compare
MMJJ_RS07155 -2.8 -10.6 [5-(aminomethyl)furan-3-yl]methyl phosphate kinase compare
MMJJ_RS05950 -2.8 -3.3 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase compare
MMJJ_RS00345 -2.8 -8.5 4-hydroxy-tetrahydrodipicolinate reductase compare
MMJJ_RS06760 -2.8 -4.3 Ni-sirohydrochlorin a,c-diamide synthase compare
MMJJ_RS03650 -2.8 -6.9 class I SAM-dependent methyltransferase family protein compare
MMJJ_RS07170 -2.8 -1.9 pyridoxal phosphate-dependent aminotransferase compare
MMJJ_RS07275 -2.8 -1.9 formate--phosphoribosylaminoimidazolecarboxamide ligase compare
MMJJ_RS01475 -2.8 -2.0 signal recognition particle-docking protein FtsY compare
MMJJ_RS02935 -2.8 -2.4 DNA-directed RNA polymerase subunit E'' compare
MMJJ_RS04145 -2.8 -5.9 glutamate-1-semialdehyde 2,1-aminomutase compare
MMJJ_RS00700 -2.8 -9.8 P-II family nitrogen regulator compare
MMJJ_RS01865 -2.7 -5.4 peptidyl-tRNA hydrolase Pth2 compare
MMJJ_RS06240 -2.7 -2.6 dihydropteroate synthase-like protein compare
MMJJ_RS00685 -2.7 -11.5 nitrogenase molybdenum-iron protein subunit beta compare
MMJJ_RS07405 -2.7 -4.3 histone family protein compare
MMJJ_RS00215 -2.7 -2.1 CCA tRNA nucleotidyltransferase compare
MMJJ_RS07470 -2.7 -1.7 50S ribosome-binding GTPase compare
MMJJ_RS06170 -2.7 -9.2 hypothetical protein compare
MMJJ_RS00690 -2.7 -15.5 nitrogenase subunit alpha compare
MMJJ_RS00705 -2.7 -14.1 nitrogenase iron protein compare
MMJJ_RS07190 -2.7 -3.6 RtcB family protein compare
MMJJ_RS08850 -2.6 -2.0 succinate dehydrogenase/fumarate reductase iron-sulfur subunit compare
MMJJ_RS05725 -2.6 -10.9 UPF0179 family protein compare
MMJJ_RS09190 -2.6 -1.8 tryptophan synthase subunit beta compare
MMJJ_RS01960 -2.6 -5.9 glycosyltransferase family 2 protein compare
MMJJ_RS06210 -2.6 -6.0 hypothetical protein compare
MMJJ_RS05655 -2.6 -5.6 HisA/HisF family protein compare
MMJJ_RS07375 -2.6 -7.3 tRNA 2-thiocytidine biosynthesis TtcA family protein compare
MMJJ_RS00235 -2.6 -14.4 hypothetical protein compare
MMJJ_RS09135 -2.6 -7.5 archaeosine biosynthesis radical SAM protein RaSEA compare
MMJJ_RS06785 -2.6 -4.5 RNA ligase partner protein compare
MMJJ_RS06750 -2.5 -2.0 homoaconitase large subunit compare
MMJJ_RS03225 -2.5 -2.5 4Fe-4S binding protein compare
MMJJ_RS05065 -2.5 -3.7 (4-{4-[2-(gamma-L- glutamylamino)ethyl]phenoxymethyl}furan-2-yl)methanamine synthase compare
MMJJ_RS03200 -2.5 -1.8 uroporphyrinogen-III synthase compare
MMJJ_RS08625 -2.5 -4.3 magnesium/cobalt transporter CorA compare
MMJJ_RS06040 -2.5 -3.8 NADH-quinone oxidoreductase subunit H compare
MMJJ_RS01870 -2.5 -1.8 methanogenesis marker 15 protein compare
MMJJ_RS06910 -2.5 -2.6 energy-converting NiFe hydrogenase A subunit EhaA compare
MMJJ_RS05295 -2.5 -7.1 cobyrinic acid a,c-diamide synthase compare
MMJJ_RS00680 -2.5 -7.6 nitrogenase iron-molybdenum cofactor biosynthesis protein NifE compare
MMJJ_RS03150 -2.5 -3.7 2-phospho-L-lactate transferase compare
MMJJ_RS05030 -2.5 -10.2 orotate phosphoribosyltransferase-like protein compare
MMJJ_RS06600 -2.4 -2.0 DUF555 domain-containing protein compare
MMJJ_RS00265 -2.4 -5.3 TIGR02253 family HAD-type hydrolase compare
MMJJ_RS07680 -2.4 -10.2 glucose-6-phosphate isomerase compare
MMJJ_RS05810 -2.4 -6.1 precorrin-4 C(11)-methyltransferase compare
MMJJ_RS00370 -2.4 -1.5 asparagine synthase (glutamine-hydrolyzing) compare
MMJJ_RS08055 -2.4 -5.7 methanogenesis marker 14 protein compare
MMJJ_RS01755 -2.4 -2.0 ferrous iron transport protein B compare
MMJJ_RS06705 -2.4 -4.3 bifunctional NADP phosphatase/NAD kinase compare
MMJJ_RS08710 -2.3 -5.8 UTP--glucose-1-phosphate uridylyltransferase GalU compare
MMJJ_RS07980 -2.3 -9.5 biotin synthase BioB compare
MMJJ_RS05540 -2.3 -13.7 LysR family transcriptional regulator compare
MMJJ_RS00550 -2.3 -6.7 AIR synthase-related protein compare
MMJJ_RS06625 -2.3 -1.5 pyruvate synthase subunit PorB compare
MMJJ_RS06250 -2.3 -2.2 nicotinamide-nucleotide adenylyltransferase compare
MMJJ_RS00475 -2.3 -2.0 bifunctional ornithine acetyltransferase/N-acetylglutamate synthase compare
MMJJ_RS08330 -2.3 -2.8 SufD family Fe-S cluster assembly protein compare
MMJJ_RS04575 -2.3 -9.0 DUF116 domain-containing protein compare
MMJJ_RS03965 -2.2 -1.5 DNA-directed RNA polymerase subunit L compare
MMJJ_RS07785 -2.2 -2.3 fumarate reductase subunit A compare
MMJJ_RS01350 -2.2 -4.6 sodium:proton antiporter compare
MMJJ_RS04980 -2.2 -4.0 bifunctional precorrin-2 dehydrogenase/sirohydrochlorin ferrochelatase compare
MMJJ_RS05710 -2.2 -4.3 single-stranded-DNA-specific exonuclease RecJ compare
MMJJ_RS00430 -2.2 -2.3 ribonuclease Z compare
MMJJ_RS06185 -2.2 -4.4 cobalamin biosynthesis protein compare
MMJJ_RS07345 -2.1 -6.6 homocysteine biosynthesis protein compare
MMJJ_RS06880 -2.1 -1.3 EhaG family protein compare
MMJJ_RS03920 -2.1 -7.2 nickel pincer cofactor biosynthesis protein LarC compare
MMJJ_RS04755 -2.1 -8.8 5,10-methenyltetrahydromethanopterin hydrogenase cofactor biosynthesis protein HmdB compare
MMJJ_RS01200 -2.1 -2.2 PRC-barrel domain-containing protein compare
MMJJ_RS01690 -2.1 -2.5 methanogenesis marker 12 protein compare
MMJJ_RS05535 -2.1 -6.0 hypothetical protein compare
MMJJ_RS08130 -2.1 -0.7 translation initiation factor IF-2 subunit gamma compare
MMJJ_RS08430 -2.1 -4.2 small nuclear ribonucleoprotein compare
MMJJ_RS05610 -2.0 -4.0 CDP-2,3-bis-(O-geranylgeranyl)-sn-glycerol synthase compare
MMJJ_RS04790 -2.0 -2.6 biotin--[acetyl-CoA-carboxylase] ligase compare
MMJJ_RS06225 -2.0 -1.7 adenosylmethionine decarboxylase compare
MMJJ_RS06110 -2.0 -1.8 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC compare
MMJJ_RS07875 -2.0 -1.6 FAD-dependent oxidoreductase compare
MMJJ_RS01345 -2.0 -3.9 (5-formylfuran-3-yl)methyl phosphate synthase compare
MMJJ_RS06270 -1.9 -6.8 dethiobiotin synthase compare
MMJJ_RS07265 -1.9 -7.6 tRNA (adenine-N1)-methyltransferase compare
MMJJ_RS03865 -1.9 -1.3 phosphoribosyl-AMP cyclohydrolase compare
MMJJ_RS08010 -1.9 -4.1 phosphoadenosine phosphosulfate reductase family protein compare
MMJJ_RS00180 -1.9 -6.7 DNA topoisomerase I compare
MMJJ_RS03245 -1.9 -1.2 UMP kinase compare
MMJJ_RS08795 -1.9 -2.1 phosphoglucosamine mutase compare
MMJJ_RS04680 -1.9 -8.2 topoisomerase DNA-binding C4 zinc finger domain-containing protein compare
MMJJ_RS05380 -1.9 -1.0 hypothetical protein compare
MMJJ_RS08020 -1.8 -4.4 nucleotidyltransferase domain-containing protein compare
MMJJ_RS07015 -1.8 -1.2 PFL family protein compare
MMJJ_RS08325 -1.8 -1.6 glycosyltransferase family 2 protein compare
MMJJ_RS02040 -1.8 -1.4 Asp-tRNA(Asn) amidotransferase subunit GatC compare
MMJJ_RS03155 -1.8 -3.4 hypothetical protein compare
MMJJ_RS04760 -1.8 -8.0 5,10-methenyltetrahydromethanopterin hydrogenase cofactor biosynthesis protein HmdC compare
MMJJ_RS06150 -1.8 -3.5 DUF483 domain-containing protein compare
MMJJ_RS06255 -1.8 -2.9 tRNA uridine(34) 5-carboxymethylaminomethyl modification radical SAM/GNAT enzyme Elp3 compare
MMJJ_RS03845 -1.8 -3.2 translation initiation factor IF-2 compare


Specific Phenotypes

For 13 genes in this experiment

For nitrogen source D-glucosamine in Methanococcus maripaludis JJ

For nitrogen source D-glucosamine across organisms