Experiment set4IT021 for Pantoea sp. MT58

Compare to:

nitrogen source Sodium nitrite 0.5mM

200 most detrimental genes:

  gene name fitness t score description  
IAI47_09245 +2.1 9.6 YmiA family putative membrane protein compare
IAI47_06395 +2.1 3.5 NADH-quinone oxidoreductase subunit NuoI compare
IAI47_01820 +1.9 12.8 two-component system response regulator OmpR compare
IAI47_15485 +1.9 3.2 molecular chaperone Skp compare
IAI47_05090 +1.8 7.5 hypothetical protein compare
IAI47_05865 +1.8 10.1 hypothetical protein compare
IAI47_06360 +1.6 3.5 NADH-quinone oxidoreductase subunit A compare
IAI47_11220 +1.6 8.2 serine/threonine-protein phosphatase compare
IAI47_16995 +1.6 5.4 protein YrbN compare
IAI47_04855 +1.5 6.9 anti-sigma-E factor RseA compare
IAI47_11685 +1.5 10.9 DotU family type VI secretion system protein compare
IAI47_11610 +1.5 7.0 serine/threonine-protein phosphatase compare
IAI47_06980 +1.5 4.2 colanic acid biosynthesis pyruvyl transferase WcaK compare
IAI47_07000 +1.4 10.5 UDP-glucose 4-epimerase GalE compare
IAI47_06400 +1.4 3.9 NADH-quinone oxidoreductase subunit J compare
IAI47_06565 +1.4 1.6 YejL family protein compare
IAI47_07020 +1.4 4.4 hypothetical protein compare
IAI47_01825 +1.4 10.1 two-component system sensor histidine kinase EnvZ compare
IAI47_07475 +1.4 2.2 hypothetical protein compare
IAI47_03610 +1.4 5.4 YqgE/AlgH family protein compare
IAI47_01750 +1.4 8.1 glycerol-3-phosphate dehydrogenase compare
IAI47_15970 +1.3 1.9 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
IAI47_07030 +1.2 7.3 HAD family hydrolase compare
IAI47_18215 +1.2 1.7 Trk system potassium transporter TrkH compare
IAI47_11210 +1.2 6.5 type VI secretion system-associated protein TagF compare
IAI47_14690 +1.1 5.9 cytochrome o ubiquinol oxidase subunit III compare
IAI47_13760 +1.1 2.8 succinate dehydrogenase membrane anchor subunit compare
IAI47_00675 +1.1 9.5 glycosyltransferase family 9 protein compare
IAI47_20250 +1.1 3.5 DeoR family transcriptional regulator compare
IAI47_08280 +1.1 7.0 flagellar transcriptional regulator FlhD compare
IAI47_07970 +1.0 5.9 flagellar type III secretion system protein FliR compare
IAI47_08285 +1.0 6.7 flagellar transcriptional regulator FlhC compare
IAI47_07025 +1.0 5.7 glycosyltransferase family 4 protein compare
IAI47_00670 +1.0 9.4 sugar glycosyltransferase compare
IAI47_14695 +1.0 4.4 cytochrome o ubiquinol oxidase subunit IV compare
IAI47_11680 +1.0 8.8 type VI secretion system membrane subunit TssM compare
IAI47_13050 +1.0 3.2 YbjN domain-containing protein compare
IAI47_06370 +1.0 5.4 NADH-quinone oxidoreductase subunit C/D compare
IAI47_06390 +1.0 3.6 NADH-quinone oxidoreductase subunit NuoH compare
IAI47_06405 +0.9 3.6 NADH-quinone oxidoreductase subunit NuoK compare
IAI47_15600 +0.9 2.1 Fe(3+)-hydroxamate ABC transporter substrate-binding protein FhuD compare
IAI47_14685 +0.9 6.5 cytochrome o ubiquinol oxidase subunit I compare
IAI47_00770 +0.9 0.9 general stress protein compare
IAI47_11360 +0.9 2.5 hypothetical protein compare
IAI47_03550 +0.9 7.0 membrane-bound lytic murein transglycosylase MltC compare
IAI47_07010 +0.9 1.7 ABC transporter permease compare
IAI47_12060 +0.9 3.8 beta-ketoacyl-ACP synthase II compare
IAI47_18520 +0.9 7.9 UDP-N-acetylglucosamine--undecaprenyl-phosphate N-acetylglucosaminephosphotransferase compare
IAI47_06415 +0.9 3.7 NADH-quinone oxidoreductase subunit M compare
IAI47_06380 +0.9 2.6 NADH-quinone oxidoreductase subunit NuoF compare
IAI47_06420 +0.9 4.2 NADH-quinone oxidoreductase subunit NuoN compare
IAI47_03645 +0.9 7.6 O-antigen ligase family protein compare
IAI47_00940 +0.9 5.3 HTH-type transcriptional repressor FabR compare
IAI47_11690 +0.9 5.2 type VI secretion system baseplate subunit TssK compare
IAI47_13850 +0.9 2.8 LexA regulated protein compare
IAI47_17980 +0.8 4.3 capsule biosynthesis GfcC family protein compare
IAI47_03640 +0.8 7.2 glycosyltransferase compare
IAI47_11675 +0.8 4.3 type VI secretion system-associated protein TagF compare
IAI47_18265 +0.8 2.4 Sec-independent protein translocase subunit TatB compare
IAI47_07015 +0.8 3.8 ABC transporter ATP-binding protein compare
IAI47_15690 +0.8 3.5 hypoxanthine phosphoribosyltransferase compare
IAI47_17145 +0.8 6.2 phospholipid ABC transporter ATP-binding protein MlaF compare
IAI47_06625 +0.8 5.5 bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase compare
IAI47_05850 +0.8 1.7 NinF family protein compare
IAI47_07360 +0.7 1.3 hypothetical protein compare
IAI47_17140 +0.7 5.6 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
IAI47_14680 +0.7 3.8 cytochrome o ubiquinol oxidase subunit II compare
IAI47_06450 +0.7 2.9 ribonucleotide-diphosphate reductase subunit beta compare
IAI47_06385 +0.7 3.3 NADH-quinone oxidoreductase subunit NuoG compare
IAI47_02585 +0.7 2.6 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
IAI47_13740 +0.7 1.3 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase compare
IAI47_06365 +0.7 3.5 NADH-quinone oxidoreductase subunit B compare
IAI47_10740 +0.7 4.4 hypothetical protein compare
IAI47_10435 +0.7 3.6 transcription modulator YdgT compare
IAI47_21610 +0.7 5.1 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase compare
IAI47_00660 +0.7 5.1 putative lipopolysaccharide heptosyltransferase III compare
IAI47_01740 +0.7 1.4 triphosphoribosyl-dephospho-CoA synthase compare
IAI47_09040 +0.7 0.8 NAD-dependent epimerase compare
IAI47_08460 +0.7 4.4 zinc ABC transporter ATP-binding protein ZnuC compare
IAI47_13560 +0.7 2.2 molybdate ABC transporter permease subunit compare
IAI47_15980 +0.7 5.3 catabolite repressor/activator compare
IAI47_17365 +0.7 3.0 type VI secretion system lipoprotein TssJ compare
IAI47_21880 +0.6 0.5 ParA family protein compare
IAI47_07005 +0.6 2.6 glycosyltransferase family 4 protein compare
IAI47_19050 +0.6 1.9 hypothetical protein compare
IAI47_17130 +0.6 5.0 phospholipid-binding protein MlaC compare
IAI47_18470 +0.6 5.1 ECA oligosaccharide polymerase compare
IAI47_04505 +0.6 3.4 transcriptional repressor MprA compare
IAI47_00935 +0.6 3.0 Si-specific NAD(P)(+) transhydrogenase compare
IAI47_12570 +0.6 0.7 tRNA-Ser compare
IAI47_09550 +0.6 2.6 hypothetical protein compare
IAI47_17135 +0.6 3.4 outer membrane lipid asymmetry maintenance protein MlaD compare
IAI47_11930 +0.6 3.4 two-component system response regulator PhoP compare
IAI47_11695 +0.6 3.1 type VI secretion system lipoprotein TssJ compare
IAI47_04425 +0.6 3.9 23S rRNA pseudouridine(1911/1915/1917) synthase RluD compare
IAI47_21390 +0.6 2.0 hypothetical protein compare
IAI47_05855 +0.6 2.4 recombination protein NinG compare
IAI47_20850 +0.6 2.6 TetR/AcrR family transcriptional regulator compare
IAI47_12435 +0.6 1.7 hypothetical protein compare
IAI47_18580 +0.6 4.6 insulinase family protein compare
IAI47_05860 +0.6 2.7 YlcG family protein compare
IAI47_06410 +0.6 3.4 NADH-quinone oxidoreductase subunit L compare
IAI47_14940 +0.6 1.3 YaiI/YqxD family protein compare
IAI47_14545 +0.6 2.4 hypothetical protein compare
IAI47_21780 +0.6 1.7 hypothetical protein compare
IAI47_10500 +0.6 4.4 dipeptide/tripeptide permease DtpA compare
IAI47_17970 +0.6 2.1 hypothetical protein compare
IAI47_04235 +0.6 4.5 RNA polymerase sigma factor RpoS compare
IAI47_05045 +0.6 3.4 type IV pilus biogenesis/stability protein PilW compare
IAI47_05825 +0.6 2.5 hypothetical protein compare
IAI47_11550 +0.6 1.4 hypothetical protein compare
IAI47_17075 +0.6 1.7 ribosome assembly RNA-binding protein YhbY compare
IAI47_05050 +0.6 3.0 cytoskeleton protein RodZ compare
IAI47_07040 +0.6 2.8 acyltransferase compare
IAI47_05880 +0.6 3.3 lysis protein compare
IAI47_16035 +0.6 3.6 thiamine/thiamine pyrophosphate ABC transporter permease ThiP compare
IAI47_17155 +0.6 3.6 calcium/sodium antiporter compare
IAI47_14700 +0.6 3.2 protoheme IX farnesyltransferase compare
IAI47_15835 +0.6 4.2 beta-lactamase regulator AmpE compare
IAI47_12760 +0.6 4.0 porin OmpF compare
IAI47_03440 +0.6 1.3 general stress protein compare
IAI47_10785 +0.6 3.5 C40 family peptidase compare
IAI47_11415 +0.6 0.8 hypothetical protein compare
IAI47_05015 +0.5 3.0 enhanced serine sensitivity protein SseB compare
IAI47_08855 +0.5 2.3 septum site-determining protein MinC compare
IAI47_07980 +0.5 3.0 flagellar type III secretion system pore protein FliP compare
IAI47_11935 +0.5 4.5 two-component system sensor histidine kinase PhoQ compare
IAI47_05720 +0.5 2.9 hypothetical protein compare
IAI47_00655 +0.5 1.3 glycosyltransferase family 4 protein compare
IAI47_06455 +0.5 2.4 ribonucleoside-diphosphate reductase subunit alpha compare
IAI47_12775 +0.5 3.7 YcbK family protein compare
IAI47_15920 +0.5 2.1 D-alanine--D-alanine ligase compare
IAI47_14535 +0.5 2.5 metal ABC transporter permease compare
IAI47_09345 +0.5 3.1 LysR family transcriptional regulator compare
IAI47_00440 +0.5 2.8 Der GTPase-activating protein YihI compare
IAI47_06055 +0.5 1.6 tRNA-Arg compare
IAI47_02455 +0.5 3.7 ribonuclease G compare
IAI47_10810 +0.5 4.2 cyclopropane fatty acyl phospholipid synthase compare
IAI47_14710 +0.5 2.5 YajQ family cyclic di-GMP-binding protein compare
IAI47_18770 +0.5 2.0 type I addiction module toxin, SymE family compare
IAI47_07890 +0.5 1.5 DgsA anti-repressor MtfA compare
IAI47_06780 +0.5 2.9 iron-sulfur cluster carrier protein ApbC compare
IAI47_18080 +0.5 3.5 Rsd/AlgQ family anti-sigma factor compare
IAI47_08605 +0.5 1.4 hypothetical protein compare
IAI47_04415 +0.5 2.7 ribosome-associated translation inhibitor RaiA compare
IAI47_12145 +0.5 2.2 flagellar basal body rod protein FlgF compare
IAI47_14730 +0.5 0.4 exodeoxyribonuclease VII small subunit compare
IAI47_11840 +0.5 2.9 GNAT family N-acetyltransferase compare
IAI47_09840 +0.5 2.4 glycosyltransferase family 4 protein compare
IAI47_08465 +0.5 2.7 zinc ABC transporter substrate-binding protein ZnuA compare
IAI47_06900 +0.5 1.2 phosphatase PAP2 family protein compare
IAI47_11535 +0.5 1.0 DcrB-related protein compare
IAI47_17110 +0.5 2.6 helix-turn-helix domain-containing protein compare
IAI47_09285 +0.5 2.0 osmotically-inducible lipoprotein OsmB compare
IAI47_18840 +0.5 1.9 membrane protein insertion efficiency factor YidD compare
IAI47_17050 +0.5 2.3 preprotein translocase subunit SecG compare
IAI47_05065 +0.5 2.1 YfgM family protein compare
IAI47_13265 +0.5 2.1 HutD family protein compare
IAI47_12135 +0.5 3.5 flagellar basal body L-ring protein FlgH compare
IAI47_17125 +0.5 3.2 lipid asymmetry maintenance protein MlaB compare
IAI47_05340 +0.5 3.3 DUF1176 domain-containing protein compare
IAI47_01625 +0.5 1.5 GNAT family N-acetyltransferase compare
IAI47_17150 +0.5 1.9 hypothetical protein compare
IAI47_09855 +0.5 1.8 DUF2384 domain-containing protein compare
IAI47_14705 +0.5 2.9 MFS transporter compare
IAI47_08105 +0.5 1.2 DinI family protein compare
IAI47_12280 +0.5 3.4 glucan biosynthesis protein G compare
IAI47_11225 +0.5 3.0 hypothetical protein compare
IAI47_17975 +0.5 1.8 YjbF family lipoprotein compare
IAI47_00830 +0.5 3.5 aquaporin family protein compare
IAI47_05875 +0.5 3.0 lysozyme compare
IAI47_02830 +0.5 1.8 divisome-associated lipoprotein YraP compare
IAI47_17780 +0.5 3.8 hypothetical protein compare
IAI47_13575 +0.5 2.3 molybdenum-dependent transcriptional regulator compare
IAI47_05845 +0.5 2.1 hypothetical protein compare
IAI47_17985 +0.4 4.0 YjbH domain-containing protein compare
IAI47_03135 +0.4 1.9 outer membrane channel protein TolC compare
IAI47_02450 +0.4 2.6 septum formation inhibitor Maf compare
IAI47_13825 +0.4 1.7 YbfA family protein compare
IAI47_08340 +0.4 1.9 protein phosphatase CheZ compare
IAI47_12390 +0.4 2.1 hypothetical protein compare
IAI47_07505 +0.4 2.6 DNA-directed RNA polymerase subunit beta compare
IAI47_12715 +0.4 3.3 glycosyltransferase family 2 protein compare
IAI47_05840 +0.4 2.3 recombination protein NinB compare
IAI47_05820 +0.4 2.8 DUF3850 domain-containing protein compare
IAI47_19860 +0.4 2.5 hypothetical protein compare
IAI47_01940 +0.4 1.0 DUF2559 family protein compare
IAI47_10725 +0.4 1.2 DUF1656 domain-containing protein compare
IAI47_15395 +0.4 2.9 MetQ/NlpA family lipoprotein compare
IAI47_14980 +0.4 1.5 hypothetical protein compare
IAI47_04735 +0.4 1.8 DUF5375 family protein compare
IAI47_05120 +0.4 1.8 DUF2158 domain-containing protein compare
IAI47_21605 +0.4 3.6 lipid IV(A) 4-amino-4-deoxy-L-arabinosyltransferase compare
IAI47_02095 +0.4 1.7 bacterioferritin-associated ferredoxin compare
IAI47_08345 +0.4 3.0 flagellar type III secretion system protein FlhB compare
IAI47_11850 +0.4 1.3 hypothetical protein compare
IAI47_21765 +0.4 0.8 YoeB-YefM toxin-antitoxin system antitoxin YefM compare
IAI47_03805 +0.4 2.1 FAD assembly factor SdhE compare
IAI47_06110 +0.4 3.0 phospholipid-binding lipoprotein MlaA compare
IAI47_01670 +0.4 2.1 YhgN family NAAT transporter compare


Specific Phenotypes

For 11 genes in this experiment

For nitrogen source Sodium nitrite in Pantoea sp. MT58

For nitrogen source Sodium nitrite across organisms