Experiment set4IT020 for Methanococcus maripaludis S2

Compare to:

H2 deepwell casamino acid FREE

200 most important genes:

  gene name fitness t score description  
MMP_RS01455 -10.5 -4.6 nickel pincer cofactor biosynthesis protein LarC compare
MMP_RS05500 -9.9 -5.3 2-isopropylmalate synthase compare
MMP_RS04215 -9.7 -7.2 nickel pincer cofactor biosynthesis protein LarB compare
MMP_RS06375 -8.5 -4.2 ATP-dependent sacrificial sulfur transferase LarE compare
MMP_RS03450 -8.5 -2.3 glycine synthesis protein GlyXS (from data) compare
MMP_RS04615 -8.3 -3.4 PDGLE domain-containing protein compare
MMP_RS07845 -7.4 -2.6 LL-diaminopimelate aminotransferase compare
MMP_RS07345 -7.4 -4.1 glycine synthesis protein GlyXL (from data) compare
MMP_RS06270 -7.3 -5.3 TIGR00300 family protein compare
MMP_RS07185 -7.2 -13.9 pyridoxal phosphate-dependent aminotransferase compare
MMP_RS01175 -7.1 -4.1 triphosphoribosyl-dephospho-CoA synthase compare
MMP_RS06400 -7.0 -1.9 4Fe-4S binding protein compare
MMP_RS05930 -6.9 -2.4 3-isopropylmalate dehydratase large subunit compare
MMP_RS02195 -6.9 -3.8 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-methylthiotransferase compare
MMP_RS06370 -6.8 -4.7 biotin synthase BioB compare
MMP_RS04500 -6.7 -17.4 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
MMP_RS03035 -6.7 -2.9 4-hydroxy-tetrahydrodipicolinate synthase compare
MMP_RS02135 -6.7 -5.1 DUF5612 domain-containing protein compare
MMP_RS06730 -6.7 -2.1 phosphopantothenate/pantothenate synthetase compare
MMP_RS03700 -6.7 -9.1 sodium:proton antiporter compare
MMP_RS06120 -6.6 -2.0 UPF0147 family protein compare
MMP_RS04710 -6.4 -1.7 hypothetical protein compare
MMP_RS00750 -6.4 -2.2 fumarate hydratase compare
MMP_RS02345 -6.3 -2.6 GTP-dependent dephospho-CoA kinase family protein compare
MMP_RS03435 -6.1 -1.9 ketol-acid reductoisomerase compare
MMP_RS04605 -6.1 -4.4 cobalt ECF transporter T component CbiQ compare
MMP_RS04685 -6.0 -3.3 DUF126 domain-containing protein compare
MMP_RS07600 -6.0 -2.8 Ni-sirohydrochlorin a c-diamide synthase compare
MMP_RS01020 -6.0 -0.9 3 4-dihydroxy-2-butanone-4-phosphate synthase compare
MMP_RS01890 -6.0 -4.2 nucleotide sugar dehydrogenase compare
MMP_RS03445 -6.0 -0.9 methanogenesis marker 17 protein compare
MMP_RS07355 -5.9 -0.9 transcription factor S compare
MMP_RS08100 -5.8 -5.7 8-amino-7-oxononanoate synthase compare
MMP_RS07730 -5.7 -1.9 pyruvate synthase subunit beta compare
MMP_RS07635 -5.7 -9.6 MogA/MoaB family molybdenum cofactor biosynthesis protein compare
MMP_RS07390 -5.7 -2.1 cell division protein FtsZ compare
MMP_RS04620 -5.6 -14.5 cobalt transporter CbiM compare
MMP_RS03315 -5.6 -1.5 ferrous iron transport protein A compare
MMP_RS06625 -5.6 -2.4 DNA primase compare
MMP_RS08105 -5.6 -8.0 6-carboxyhexanoate--CoA ligase compare
MMP_RS03960 -5.6 -0.9 hypothetical protein compare
MMP_RS06975 -5.5 -2.2 sulfide-dependent adenosine diphosphate thiazole synthase compare
MMP_RS02145 -5.5 -7.6 winged helix-turn-helix transcriptional regulator compare
MMP_RS05265 -5.4 -2.0 2-isopropylmalate synthase compare
MMP_RS08650 -5.4 -3.4 glutamine--fructose-6-phosphate transaminase (isomerizing) compare
MMP_RS07750 -5.4 -5.0 DUF357 domain-containing protein compare
MMP_RS08715 -5.3 -2.2 formylmethanofuran dehydrogenase subunit B compare
MMP_RS02240 -5.3 -4.2 methanogenesis marker 7 protein compare
MMP_RS01925 -5.3 -13.3 DUF1616 domain-containing protein compare
MMP_RS08210 -5.3 -2.6 phosphatidylglycerophosphatase A compare
MMP_RS06285 -5.3 -2.6 precorrin-6Y C5 15-methyltransferase (decarboxylating) subunit CbiT compare
MMP_RS06355 -5.3 -2.6 molybdenum cofactor biosynthesis protein MoaE compare
MMP_RS05515 -5.3 -8.0 cyclic pyranopterin monophosphate synthase MoaC compare
MMP_RS05425 -5.3 -5.6 monovalent cation/H+ antiporter complex subunit F compare
MMP_RS09020 -5.3 -1.9 hypothetical protein compare
MMP_RS06230 -5.3 -2.1 helix-turn-helix domain-containing protein compare
MMP_RS08095 -5.2 -5.7 dethiobiotin synthase compare
MMP_RS01005 -5.2 -1.1 riboflavin synthase compare
MMP_RS04780 -5.1 -3.0 ribonuclease P compare
MMP_RS01875 -5.0 -13.8 N-acetyltransferase compare
MMP_RS07380 -5.0 -2.3 transcription elongation factor Spt5 compare
MMP_RS08745 -5.0 -8.3 CDP-2 3-bis-(O-geranylgeranyl)-sn-glycerol synthase compare
MMP_RS07645 -5.0 -6.7 aldehyde dehydrogenase family protein compare
MMP_RS01800 -5.0 -4.9 TIGR00303 family protein compare
MMP_RS07555 -5.0 -0.8 monovalent cation/H+ antiporter subunit E compare
MMP_RS02900 -4.9 -0.8 imidazoleglycerol-phosphate dehydratase HisB compare
MMP_RS05845 -4.9 -2.1 tRNA-intron lyase compare
MMP_RS08790 -4.9 -2.5 translation initiation factor IF-2 subunit alpha compare
MMP_RS01220 -4.8 -8.4 hypothetical protein compare
MMP_RS00300 -4.8 -0.7 6 7-dimethyl-8-ribityllumazine synthase compare
MMP_RS02875 -4.8 -8.2 chorismate pyruvate-lyase family protein compare
MMP_RS06350 -4.7 -5.1 HesA/MoeB/ThiF family protein compare
MMP_RS08820 -4.7 -5.5 hypothetical protein compare
MMP_RS01900 -4.7 -21.5 hypothetical protein compare
MMP_RS05550 -4.6 -0.7 cation:proton antiporter compare
MMP_RS01385 -4.6 -0.7 imidazole glycerol phosphate synthase subunit HisH compare
MMP_RS00305 -4.6 -2.2 phosphoribosyl-ATP diphosphatase compare
MMP_RS01325 -4.6 -2.5 dihydroneopterin aldolase family protein compare
MMP_RS05920 -4.6 -0.7 50S ribosomal protein L37e compare
MMP_RS05250 -4.5 -1.4 NFYB/HAP3 family transcription factor subunit compare
MMP_RS03600 -4.5 -2.5 triose-phosphate isomerase compare
MMP_RS04790 -4.5 -16.4 4-hydroxy-tetrahydrodipicolinate reductase compare
MMP_RS07755 -4.5 -1.0 DUF555 domain-containing protein compare
MMP_RS06295 -4.5 -7.3 methanogenesis marker 14 protein compare
MMP_RS07955 -4.4 -6.7 FumA C-terminus/TtdB family hydratase beta subunit compare
MMP_RS03015 -4.4 -9.2 GTP 3' 8-cyclase MoaA compare
MMP_RS00685 -4.4 -4.9 2-phospho-L-lactate guanylyltransferase compare
MMP_RS07200 -4.4 -8.1 [5-(aminomethyl)furan-3-yl]methyl phosphate kinase compare
MMP_RS02280 -4.3 -0.9 DUF211 domain-containing protein compare
MMP_RS01225 -4.3 -6.4 DUF5379 domain-containing protein compare
MMP_RS07195 -4.3 -8.4 M20 family metallo-hydrolase compare
MMP_RS01830 -4.3 -1.6 tRNA-Val compare
MMP_RS07545 -4.3 -0.9 HTH domain-containing protein compare
MMP_RS06630 -4.3 -0.9 UPF0058 family protein compare
MMP_RS00110 -4.3 -2.8 hypothetical protein compare
MMP_RS01700 -4.3 -0.9 dihydroxy-acid dehydratase compare
MMP_RS08720 -4.3 -1.8 4Fe-4S binding protein compare
MMP_RS00895 -4.3 -4.6 hypothetical protein compare
MMP_RS08300 -4.2 -1.1 metal-sulfur cluster assembly factor compare
MMP_RS08330 -4.2 -5.0 NADH-quinone oxidoreductase subunit H compare
MMP_RS04775 -4.2 -4.0 adenosylhomocysteinase compare
MMP_RS01905 -4.2 -17.3 glycosyltransferase compare
MMP_RS01500 -4.2 -2.5 CBS domain-containing protein compare
MMP_RS01795 -4.2 -1.9 methanogenesis marker 6 protein compare
MMP_RS01880 -4.2 -6.9 DegT/DnrJ/EryC1/StrS family aminotransferase compare
MMP_RS05555 -4.2 -1.3 DUF4040 domain-containing protein compare
MMP_RS03580 -4.1 -3.4 signal recognition particle-docking protein FtsY compare
MMP_RS04720 -4.1 -3.2 DedA family protein compare
MMP_RS08460 -4.1 -2.8 proteasome-activating nucleotidase compare
MMP_RS05345 -4.1 -8.9 hypothetical protein compare
MMP_RS06130 -4.1 -4.4 peptidylprolyl isomerase compare
MMP_RS00515 -4.0 -0.9 DUF655 domain-containing protein compare
MMP_RS01885 -4.0 -8.9 Gfo/Idh/MocA family oxidoreductase compare
MMP_RS00695 -4.0 -0.9 biotin--[acetyl-CoA-carboxylase] ligase compare
MMP_RS01975 -4.0 -15.2 hypothetical protein compare
MMP_RS04890 -3.9 -0.9 adenylyltransferase/cytidyltransferase family protein compare
MMP_RS03390 -3.9 -8.0 malate dehydrogenase compare
MMP_RS00520 -3.8 -2.0 RNA polymerase Rpb4 family protein compare
MMP_RS07575 -3.8 -4.1 RNA ligase partner protein compare
MMP_RS06475 -3.8 -6.0 FAD-dependent oxidoreductase compare
MMP_RS06895 -3.8 -2.0 selenocysteine-specific translation elongation factor compare
MMP_RS03400 -3.8 -2.2 archease compare
MMP_RS01955 -3.8 -3.1 hypothetical protein compare
MMP_RS08435 -3.7 -2.1 Era-like GTP-binding protein compare
MMP_RS02355 -3.7 -3.4 30S ribosomal protein S27ae compare
MMP_RS08635 -3.7 -2.2 UbiA family prenyltransferase compare
MMP_RS06340 -3.7 -7.8 phosphoadenosine phosphosulfate reductase family protein compare
MMP_RS05835 -3.6 -1.0 secondary thiamine-phosphate synthase enzyme YjbQ compare
MMP_RS06020 -3.6 -5.6 archaeoflavoprotein AfpA compare
MMP_RS07735 -3.6 -0.8 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha compare
MMP_RS03025 -3.6 -5.3 molybdenum cofactor guanylyltransferase compare
MMP_RS01380 -3.6 -4.2 PHP domain-containing protein compare
MMP_RS01910 -3.5 -11.6 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
MMP_RS06725 -3.5 -10.8 hypothetical protein compare
MMP_RS01610 -3.5 -2.6 hypothetical protein compare
MMP_RS07580 -3.4 -3.1 DUF356 domain-containing protein compare
MMP_RS06670 -3.4 -5.6 glucose-6-phosphate isomerase compare
MMP_RS07075 -3.4 -3.3 phosphomannomutase/phosphoglucomutase compare
MMP_RS03475 -3.4 -0.7 hypothetical protein compare
MMP_RS07005 -3.3 -0.7 4Fe-4S binding protein compare
MMP_RS07710 -3.3 -7.0 cell division protein FtsZ compare
MMP_RS06925 -3.3 -2.2 ribonuclease VapC4 compare
MMP_RS01725 -3.2 -4.3 class I SAM-dependent methyltransferase family protein compare
MMP_RS03145 -3.2 -7.1 fibrillarin-like rRNA/tRNA 2'-O-methyltransferase compare
MMP_RS00810 -3.2 -7.3 topoisomerase DNA-binding C4 zinc finger domain-containing protein compare
MMP_RS08360 -3.2 -5.5 hypothetical protein compare
MMP_RS07630 -3.1 -1.6 ATP-binding cassette domain-containing protein compare
MMP_RS00985 -3.1 -5.0 CDC48 family AAA ATPase compare
MMP_RS05640 -3.1 -6.3 UTP--glucose-1-phosphate uridylyltransferase GalU compare
MMP_RS06105 -3.1 -6.9 hydrogenase maturation peptidase HycI compare
MMP_RS08165 -3.1 -2.9 phosphoglycerate dehydrogenase compare
MMP_RS01755 -3.1 -1.3 DUF2097 domain-containing protein compare
MMP_RS08440 -3.1 -2.3 cell division protein SepF compare
MMP_RS01545 -3.0 -1.2 CBS domain-containing protein compare
MMP_RS04090 -3.0 -2.8 hypothetical protein compare
MMP_RS01970 -3.0 -11.0 TIGR04279 domain-containing protein compare
MMP_RS01265 -3.0 -1.6 hypothetical protein compare
MMP_RS07540 -3.0 -4.5 CBS domain-containing protein compare
MMP_RS08335 -2.9 -6.1 NADH-quinone oxidoreductase subunit B family protein compare
MMP_RS08340 -2.8 -4.8 4Fe-4S binding protein compare
MMP_RS08840 -2.8 -11.2 class I SAM-dependent methyltransferase compare
MMP_RS03640 -2.8 -3.2 archaeal proteasome endopeptidase complex subunit beta compare
MMP_RS03140 -2.8 -12.7 hypothetical protein compare
MMP_RS06885 -2.8 -2.8 50S ribosome-binding GTPase compare
MMP_RS02190 -2.8 -3.8 sulfopyruvate decarboxylase subunit alpha compare
MMP_RS01915 -2.8 -12.8 DUF354 domain-containing protein compare
MMP_RS00130 -2.7 -1.4 nickel-responsive transcriptional regulator NikR compare
MMP_RS01895 -2.7 -12.5 flippase compare
MMP_RS07420 -2.6 -3.0 metalloregulator ArsR/SmtB family transcription factor compare
MMP_RS05925 -2.6 -3.3 small nuclear ribonucleoprotein compare
MMP_RS03205 -2.5 -1.4 peptidyl-tRNA hydrolase Pth2 compare
MMP_RS02800 -2.5 -4.9 nucleotidyltransferase domain-containing protein compare
MMP_RS05950 -2.5 -10.6 nickel-dependent hydrogenase large subunit compare
MMP_RS03250 -2.5 -3.7 MJ1244 family protein compare
MMP_RS04585 -2.5 -8.7 AIR synthase related protein compare
MMP_RS02175 -2.5 -0.9 DUF1611 domain-containing protein compare
MMP_RS04875 -2.4 -4.5 energy-converting hydrogenase B subunit P compare
MMP_RS06980 -2.4 -6.9 tRNA 2-thiocytidine biosynthesis TtcA family protein compare
MMP_RS00115 -2.4 -10.8 radical SAM protein compare
MMP_RS07605 -2.4 -2.5 diadenylate cyclase compare
MMP_RS08760 -2.4 -2.0 hypothetical protein compare
MMP_RS07875 -2.4 -4.9 hypothetical protein compare
MMP_RS03095 -2.3 -4.7 diphthine synthase compare
MMP_RS01960 -2.3 -0.7 hypothetical protein compare
MMP_RS07090 -2.3 -8.0 tRNA (adenine-N1)-methyltransferase compare
MMP_RS04785 -2.3 -9.5 hypothetical protein compare
MMP_RS08645 -2.2 -5.8 UPF0179 family protein compare
MMP_RS06310 -2.2 -4.9 NAD(P)/FAD-dependent oxidoreductase compare
MMP_RS08445 -2.2 -4.5 DUF2099 family protein compare
MMP_RS08365 -2.2 -3.5 energy conserving hydrogenase EhbF compare
MMP_RS02235 -2.2 -9.3 CBS domain-containing protein compare
MMP_RS05430 -2.2 -3.3 TIGR00288 family NYN domain-containing protein compare
MMP_RS01840 -2.2 -7.7 TIGR00289 family protein compare
MMP_RS07625 -2.1 -2.3 cobalt ECF transporter T component CbiQ compare
MMP_RS01920 -2.1 -12.0 glycosyltransferase family 2 protein compare
MMP_RS07615 -2.1 -5.9 energy-coupling factor ABC transporter permease compare
MMP_RS02010 -2.0 -6.9 PHP domain-containing protein compare
MMP_RS07425 -2.0 -5.0 GTP-binding protein compare
MMP_RS07820 -2.0 -3.3 UPF0104 family protein compare
MMP_RS06840 -2.0 -0.9 DNA-directed RNA polymerase subunit N compare


Specific Phenotypes

None in this experiment

For Methanococcus maripaludis S2 in nutrient t2 experiments

For nutrient t2 Sodium acetate across organisms