Experiment set4IT020 for Methanococcus maripaludis JJ

Compare to:

H2 N-free with 10mM D-glucosamine

200 most important genes:

  gene name fitness t score description  
MMJJ_RS07950 -4.3 -2.9 4Fe-4S binding protein compare
MMJJ_RS00275 -4.3 -2.5 coenzyme F420-0:L-glutamate ligase compare
MMJJ_RS06625 -4.2 -2.2 pyruvate synthase subunit PorB compare
MMJJ_RS07505 -4.2 -1.1 DNA-directed RNA polymerase subunit K compare
MMJJ_RS03810 -4.1 -2.6 AIR synthase-related protein compare
MMJJ_RS06880 -3.8 -1.7 EhaG family protein compare
MMJJ_RS01600 -3.7 -2.5 radical SAM protein compare
MMJJ_RS06175 -3.7 -2.1 DUF1743 domain-containing protein compare
MMJJ_RS04485 -3.6 -8.8 riboflavin synthase compare
MMJJ_RS06485 -3.6 -2.5 phosphoglycerate kinase compare
MMJJ_RS03060 -3.6 -3.2 methanogenesis marker 7 protein compare
MMJJ_RS02035 -3.6 -5.3 4-hydroxy-tetrahydrodipicolinate synthase compare
MMJJ_RS06490 -3.5 -2.4 methanogenesis marker 2 protein compare
MMJJ_RS03005 -3.5 -2.4 Ni-sirohydrochlorin a,c-diamide reductive cyclase catalytic subunit compare
MMJJ_RS02045 -3.4 -3.2 molybdenum cofactor guanylyltransferase compare
MMJJ_RS03895 -3.4 -3.4 hydrogenase expression/formation protein HypE compare
MMJJ_RS08035 -3.4 -7.5 cobalt-precorrin-7 (C(5))-methyltransferase compare
MMJJ_RS04200 -3.4 -6.5 triphosphoribosyl-dephospho-CoA synthase compare
MMJJ_RS03615 -3.2 -3.3 cobalt-precorrin-8 methylmutase compare
MMJJ_RS02920 -3.2 -2.1 30S ribosomal protein S27ae compare
MMJJ_RS03200 -3.1 -1.8 uroporphyrinogen-III synthase compare
MMJJ_RS02090 -3.1 -5.9 tyramine--L-glutamate ligase compare
MMJJ_RS03840 -3.1 -3.0 DHH family phosphoesterase compare
MMJJ_RS05575 -3.1 -4.5 2-amino-5-formylamino-6-ribosylaminopyrimidin- 4(3H)-one 5'-monophosphate deformylase compare
MMJJ_RS01360 -3.1 -1.9 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
MMJJ_RS03580 -3.0 -3.5 TIGR00303 family protein compare
MMJJ_RS05115 -3.0 -6.9 P-II family nitrogen regulator compare
MMJJ_RS03225 -3.0 -2.5 4Fe-4S binding protein compare
MMJJ_RS03670 -2.9 -4.5 precorrin-2 C(20)-methyltransferase compare
MMJJ_RS03230 -2.9 -4.3 NAD(P)/FAD-dependent oxidoreductase compare
MMJJ_RS03760 -2.9 -3.8 hydrogenase maturation nickel metallochaperone HypA compare
MMJJ_RS09375 -2.9 -1.8 hypothetical protein compare
MMJJ_RS07005 -2.9 -6.4 transcription factor S compare
MMJJ_RS06840 -2.9 -3.4 nickel-dependent hydrogenase large subunit compare
MMJJ_RS05110 -2.8 -16.2 ammonium transporter compare
MMJJ_RS05450 -2.8 -10.4 TIGR03576 family pyridoxal phosphate-dependent enzyme compare
MMJJ_RS00125 -2.8 -1.9 KEOPS complex subunit Cgi121 compare
MMJJ_RS06225 -2.8 -2.3 adenosylmethionine decarboxylase compare
MMJJ_RS07405 -2.8 -4.6 histone family protein compare
MMJJ_RS06750 -2.8 -2.1 homoaconitase large subunit compare
MMJJ_RS01755 -2.8 -1.9 ferrous iron transport protein B compare
MMJJ_RS00235 -2.7 -15.2 hypothetical protein compare
MMJJ_RS05650 -2.7 -3.0 formylmethanofuran dehydrogenase subunit B compare
MMJJ_RS07720 -2.7 -1.9 UPF0058 family protein compare
MMJJ_RS04565 -2.7 -3.5 sirohydrochlorin nickelochelatase compare
MMJJ_RS04800 -2.7 -5.7 2-phospho-L-lactate guanylyltransferase compare
MMJJ_RS01475 -2.7 -2.0 signal recognition particle-docking protein FtsY compare
MMJJ_RS05930 -2.7 -2.0 cell division protein SepF compare
MMJJ_RS05260 -2.7 -5.9 ATP-grasp domain-containing protein compare
MMJJ_RS08080 -2.7 -6.4 TIGR00300 family protein compare
MMJJ_RS06240 -2.7 -2.8 dihydropteroate synthase-like protein compare
MMJJ_RS03150 -2.7 -5.9 2-phospho-L-lactate transferase compare
MMJJ_RS08535 -2.6 -3.6 NOL1/NOP2/sun family putative RNA methylase compare
MMJJ_RS05620 -2.6 -3.6 CoB--CoM heterodisulfide reductase iron-sulfur subunit A family protein compare
MMJJ_RS04970 -2.6 -1.7 DUF655 domain-containing protein compare
MMJJ_RS09190 -2.6 -1.9 tryptophan synthase subunit beta compare
MMJJ_RS08095 -2.5 -4.2 cobyric acid synthase CobQ compare
MMJJ_RS05295 -2.5 -11.4 cobyrinic acid a,c-diamide synthase compare
MMJJ_RS05420 -2.5 -2.4 DNA-directed DNA polymerase II small subunit compare
MMJJ_RS05490 -2.5 -2.4 imidazole glycerol phosphate synthase subunit HisF compare
MMJJ_RS03055 -2.5 -2.4 hypothetical protein compare
MMJJ_RS07155 -2.5 -9.4 [5-(aminomethyl)furan-3-yl]methyl phosphate kinase compare
MMJJ_RS06760 -2.5 -4.6 Ni-sirohydrochlorin a,c-diamide synthase compare
MMJJ_RS05655 -2.5 -6.8 HisA/HisF family protein compare
MMJJ_RS07000 -2.4 -1.7 TrkH family potassium uptake protein compare
MMJJ_RS03785 -2.4 -2.1 hypothetical protein compare
MMJJ_RS05950 -2.4 -3.2 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase compare
MMJJ_RS07875 -2.4 -1.5 FAD-dependent oxidoreductase compare
MMJJ_RS08340 -2.4 -4.6 archaeoflavoprotein AfpA compare
MMJJ_RS05065 -2.4 -4.0 (4-{4-[2-(gamma-L- glutamylamino)ethyl]phenoxymethyl}furan-2-yl)methanamine synthase compare
MMJJ_RS04975 -2.4 -1.7 glycosyltransferase family 4 protein compare
MMJJ_RS04050 -2.4 -1.8 dihydroneopterin aldolase family protein compare
MMJJ_RS08010 -2.4 -7.3 phosphoadenosine phosphosulfate reductase family protein compare
MMJJ_RS03095 -2.3 -2.1 bifunctional N(6)-L-threonylcarbamoyladenine synthase/serine/threonine protein kinase compare
MMJJ_RS00370 -2.3 -1.7 asparagine synthase (glutamine-hydrolyzing) compare
MMJJ_RS03125 -2.3 -3.9 GMC oxidoreductase compare
MMJJ_RS03160 -2.3 -9.4 winged helix-turn-helix transcriptional regulator compare
MMJJ_RS05330 -2.3 -2.1 DNA polymerase II large subunit compare
MMJJ_RS00580 -2.3 -1.5 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase subunit CofG compare
MMJJ_RS03190 -2.3 -2.2 phosphopyruvate hydratase compare
MMJJ_RS00205 -2.3 -5.0 adenosylcobinamide-phosphate synthase CbiB compare
MMJJ_RS04685 -2.3 -7.7 carbamoyltransferase HypF compare
MMJJ_RS05590 -2.3 -1.8 homoserine dehydrogenase compare
MMJJ_RS00560 -2.3 -3.4 homoisocitrate dehydrogenase compare
MMJJ_RS05070 -2.3 -1.9 DNA primase catalytic subunit PriS compare
MMJJ_RS06155 -2.3 -4.7 phosphatidylglycerophosphatase A compare
MMJJ_RS04980 -2.2 -4.1 bifunctional precorrin-2 dehydrogenase/sirohydrochlorin ferrochelatase compare
MMJJ_RS04790 -2.2 -3.8 biotin--[acetyl-CoA-carboxylase] ligase compare
MMJJ_RS04155 -2.2 -6.0 hypothetical protein compare
MMJJ_RS06930 -2.2 -2.1 type II methionyl aminopeptidase compare
MMJJ_RS05415 -2.2 -1.2 hypothetical protein compare
MMJJ_RS05710 -2.2 -3.8 single-stranded-DNA-specific exonuclease RecJ compare
MMJJ_RS05810 -2.2 -6.0 precorrin-4 C(11)-methyltransferase compare
MMJJ_RS03875 -2.2 -3.4 CBS domain-containing protein compare
MMJJ_RS04615 -2.1 -3.1 methanogenesis marker 3 protein compare
MMJJ_RS06250 -2.1 -2.2 nicotinamide-nucleotide adenylyltransferase compare
MMJJ_RS01935 -2.1 -3.9 O-phosphoseryl-tRNA(Sec) selenium transferase compare
MMJJ_RS06905 -2.1 -2.0 hypothetical protein compare
MMJJ_RS03295 -2.1 -10.4 PHP domain-containing protein compare
MMJJ_RS03110 -2.1 -3.5 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))- methylthiotransferase compare
MMJJ_RS06170 -2.1 -9.0 hypothetical protein compare
MMJJ_RS07245 -2.1 -4.3 amidohydrolase family protein compare
MMJJ_RS00345 -2.1 -6.8 4-hydroxy-tetrahydrodipicolinate reductase compare
MMJJ_RS07785 -2.0 -2.6 fumarate reductase subunit A compare
MMJJ_RS04475 -2.0 -2.8 3,4-dihydroxy-2-butanone-4-phosphate synthase compare
MMJJ_RS00690 -2.0 -13.3 nitrogenase subunit alpha compare
MMJJ_RS00685 -2.0 -13.1 nitrogenase molybdenum-iron protein subunit beta compare
MMJJ_RS01960 -2.0 -5.7 glycosyltransferase family 2 protein compare
MMJJ_RS08320 -2.0 -2.1 CDP-diacylglycerol--serine O-phosphatidyltransferase compare
MMJJ_RS08660 -2.0 -2.8 acetylornithine transaminase compare
MMJJ_RS00705 -1.9 -11.2 nitrogenase iron protein compare
MMJJ_RS00215 -1.9 -2.0 CCA tRNA nucleotidyltransferase compare
MMJJ_RS06785 -1.9 -8.0 RNA ligase partner protein compare
MMJJ_RS04930 -1.9 -11.3 MFS transporter compare
MMJJ_RS09120 -1.9 -1.4 aspartate kinase compare
MMJJ_RS00450 -1.9 -1.5 DUF126 domain-containing protein compare
MMJJ_RS06185 -1.9 -4.7 cobalamin biosynthesis protein compare
MMJJ_RS01880 -1.9 -2.3 RlmE family RNA methyltransferase compare
MMJJ_RS00195 -1.9 -3.2 precorrin-3B C(17)-methyltransferase compare
MMJJ_RS04670 -1.9 -5.0 DUF2117 domain-containing protein compare
MMJJ_RS07015 -1.9 -1.4 PFL family protein compare
MMJJ_RS06040 -1.9 -3.1 NADH-quinone oxidoreductase subunit H compare
MMJJ_RS00700 -1.8 -6.9 P-II family nitrogen regulator compare
MMJJ_RS08020 -1.8 -7.3 nucleotidyltransferase domain-containing protein compare
MMJJ_RS00675 -1.8 -9.8 nitrogenase compare
MMJJ_RS07955 -1.8 -6.9 ThiF family adenylyltransferase compare
MMJJ_RS06255 -1.8 -4.6 tRNA uridine(34) 5-carboxymethylaminomethyl modification radical SAM/GNAT enzyme Elp3 compare
MMJJ_RS07170 -1.8 -2.9 pyridoxal phosphate-dependent aminotransferase compare
MMJJ_RS05935 -1.8 -1.8 Era-like GTP-binding protein compare
MMJJ_RS04110 -1.8 -6.1 hypothetical protein compare
MMJJ_RS03920 -1.8 -8.1 nickel pincer cofactor biosynthesis protein LarC compare
MMJJ_RS03310 -1.8 -2.6 hypothetical protein compare
MMJJ_RS05030 -1.8 -9.3 orotate phosphoribosyltransferase-like protein compare
MMJJ_RS01865 -1.7 -4.8 peptidyl-tRNA hydrolase Pth2 compare
MMJJ_RS04770 -1.7 -2.5 formate-dependent phosphoribosylglycinamide formyltransferase compare
MMJJ_RS01690 -1.7 -2.3 methanogenesis marker 12 protein compare
MMJJ_RS05595 -1.7 -2.1 hypothetical protein compare
MMJJ_RS06510 -1.7 -2.4 LL-diaminopimelate aminotransferase compare
MMJJ_RS00680 -1.7 -8.7 nitrogenase iron-molybdenum cofactor biosynthesis protein NifE compare
MMJJ_RS09175 -1.7 -1.2 anthranilate synthase component I compare
MMJJ_RS08795 -1.6 -1.9 phosphoglucosamine mutase compare
MMJJ_RS01565 -1.6 -4.1 TIGR00267 family protein compare
MMJJ_RS00695 -1.6 -5.7 P-II family nitrogen regulator compare
MMJJ_RS03820 -1.6 -2.8 hydrogenase formation protein HypD compare
MMJJ_RS07380 -1.6 -5.4 sulfide-dependent adenosine diphosphate thiazole synthase compare
MMJJ_RS08230 -1.6 -2.5 ribose-5-phosphate isomerase RpiA compare
MMJJ_RS09095 -1.6 -5.5 MMPL family transporter compare
MMJJ_RS00355 -1.6 -2.5 ribonuclease P protein component 4 compare
MMJJ_RS06695 -1.6 -2.4 amidohydrolase compare
MMJJ_RS04985 -1.6 -3.1 glutamyl-tRNA reductase compare
MMJJ_RS07410 -1.6 -3.0 methanogenesis marker protein Mmp4/MtxX compare
MMJJ_RS04520 -1.6 -3.0 coenzyme F430 synthase compare
MMJJ_RS04750 -1.6 -6.3 5,10-methenyltetrahydromethanopterin hydrogenase compare
MMJJ_RS03240 -1.6 -1.6 histone family protein compare
MMJJ_RS00425 -1.6 -2.3 hypothetical protein compare
MMJJ_RS02935 -1.5 -2.0 DNA-directed RNA polymerase subunit E'' compare
MMJJ_RS06535 -1.5 -10.2 UPF0104 family protein compare
MMJJ_RS05870 -1.5 -3.5 pyridoxal 5'-phosphate synthase glutaminase subunit PdxT compare
MMJJ_RS08155 -1.5 -3.0 cobalt-precorrin-5B (C(1))-methyltransferase CbiD compare
MMJJ_RS06700 -1.5 -3.4 L-seryl-tRNA(Sec) kinase compare
MMJJ_RS06150 -1.5 -2.5 DUF483 domain-containing protein compare
MMJJ_RS04680 -1.5 -7.1 topoisomerase DNA-binding C4 zinc finger domain-containing protein compare
MMJJ_RS07280 -1.5 -6.8 phosphomannomutase/phosphoglucomutase compare
MMJJ_RS04755 -1.5 -6.8 5,10-methenyltetrahydromethanopterin hydrogenase cofactor biosynthesis protein HmdB compare
MMJJ_RS06200 -1.5 -1.5 phosphoglycerate dehydrogenase compare
MMJJ_RS01415 -1.5 -1.7 beta-CASP ribonuclease aCPSF1 compare
MMJJ_RS05280 -1.5 -0.7 hypothetical protein compare
MMJJ_RS01200 -1.5 -2.0 PRC-barrel domain-containing protein compare
MMJJ_RS08055 -1.5 -4.5 methanogenesis marker 14 protein compare
MMJJ_RS04620 -1.5 -2.2 homocitrate synthase family protein compare
MMJJ_RS03170 -1.5 -5.2 DUF5612 domain-containing protein compare
MMJJ_RS04760 -1.5 -7.7 5,10-methenyltetrahydromethanopterin hydrogenase cofactor biosynthesis protein HmdC compare
MMJJ_RS03270 -1.5 -1.5 ribosome biogenesis/translation initiation ATPase RLI compare
MMJJ_RS03490 -1.5 -1.5 ribonuclease VapC compare
MMJJ_RS07350 -1.4 -2.1 4Fe-4S binding protein compare
MMJJ_RS03245 -1.4 -1.0 UMP kinase compare
MMJJ_RS05645 -1.4 -2.0 4Fe-4S binding protein compare
MMJJ_RS00285 -1.4 -7.2 UPF0254 family protein compare
MMJJ_RS00180 -1.4 -5.5 DNA topoisomerase I compare
MMJJ_RS03845 -1.4 -3.4 translation initiation factor IF-2 compare
MMJJ_RS00550 -1.4 -6.6 AIR synthase-related protein compare
MMJJ_RS04575 -1.4 -6.2 DUF116 domain-containing protein compare
MMJJ_RS05535 -1.4 -6.7 hypothetical protein compare
MMJJ_RS05995 -1.4 -1.6 ATP-binding cassette domain-containing protein compare
MMJJ_RS00645 -1.4 -6.8 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
MMJJ_RS01810 -1.4 -0.9 methyl coenzyme M reductase system, component A2 compare
MMJJ_RS06805 -1.4 -2.1 monovalent cation/H+ antiporter subunit E compare
MMJJ_RS04505 -1.4 -4.6 CDC48 family AAA ATPase compare
MMJJ_RS07980 -1.4 -6.6 biotin synthase BioB compare
MMJJ_RS07725 -1.4 -2.8 DNA primase DnaG compare
MMJJ_RS07370 -1.4 -3.8 tRNA 4-thiouridine(8) synthase ThiI compare
MMJJ_RS03650 -1.3 -3.0 class I SAM-dependent methyltransferase family protein compare
MMJJ_RS04145 -1.3 -5.1 glutamate-1-semialdehyde 2,1-aminomutase compare
MMJJ_RS08330 -1.3 -1.6 SufD family Fe-S cluster assembly protein compare
MMJJ_RS03155 -1.3 -4.5 hypothetical protein compare
MMJJ_RS07470 -1.3 -1.2 50S ribosome-binding GTPase compare
MMJJ_RS08430 -1.3 -4.1 small nuclear ribonucleoprotein compare
MMJJ_RS08840 -1.3 -2.9 calcium/sodium antiporter compare
MMJJ_RS03660 -1.3 -1.6 DUF447 family protein compare
MMJJ_RS06865 -1.3 -2.0 NADH-quinone oxidoreductase subunit H compare


Specific Phenotypes

For 12 genes in this experiment

For nitrogen source D-glucosamine in Methanococcus maripaludis JJ

For nitrogen source D-glucosamine across organisms