Experiment set4IT020 for Methanococcus maripaludis JJ

Compare to:

H2 N-free with 10mM D-glucosamine

200 most detrimental genes:

  gene name fitness t score description  
MMJJ_RS06050 +4.2 20.1 molybdopterin molybdotransferase MoeA compare
MMJJ_RS02190 +4.1 27.3 molybdopterin biosynthesis protein compare
MMJJ_RS06390 +3.4 1.7 NADPH-dependent F420 reductase compare
MMJJ_RS07040 +3.2 3.2 preprotein translocase subunit SecY compare
MMJJ_RS00210 +2.8 1.6 DUF530 family protein compare
MMJJ_RS01010 +2.5 23.7 right-handed parallel beta-helix repeat-containing protein compare
MMJJ_RS08335 +2.4 1.4 ABC transporter ATP-binding protein compare
MMJJ_RS07995 +2.4 5.3 molybdenum cofactor biosynthesis protein MoaE compare
MMJJ_RS04720 +2.3 2.9 IMP dehydrogenase compare
MMJJ_RS08855 +2.3 5.6 cyclic pyranopterin monophosphate synthase MoaC compare
MMJJ_RS08620 +2.1 1.7 DUF373 family protein compare
MMJJ_RS02055 +2.1 10.3 GTP 3',8-cyclase MoaA compare
MMJJ_RS04415 +2.1 3.8 hypothetical protein compare
MMJJ_RS00270 +2.0 1.4 adenosylcobinamide-GDP ribazoletransferase compare
MMJJ_RS01830 +2.0 1.8 tRNA(Ile)(2)-agmatinylcytidine synthase compare
MMJJ_RS06725 +1.6 7.8 MogA/MoaB family molybdenum cofactor biosynthesis protein compare
MMJJ_RS08520 +1.4 1.2 peptidylprolyl isomerase compare
MMJJ_RS04230 +1.3 9.6 ABC transporter ATP-binding protein compare
MMJJ_RS08065 +1.3 1.5 precorrin-6Y C5,15-methyltransferase (decarboxylating) subunit CbiT compare
MMJJ_RS04995 +1.3 2.7 Tfx family DNA-binding protein compare
MMJJ_RS07355 +1.2 4.7 MoaD/ThiS family protein compare
MMJJ_RS08000 +1.1 5.4 HesA/MoeB/ThiF family protein compare
MMJJ_RS02665 +1.1 1.3 methyl-accepting chemotaxis protein compare
MMJJ_RS03965 +1.1 1.4 DNA-directed RNA polymerase subunit L compare
MMJJ_RS06975 +1.1 3.8 protein translocase SEC61 complex subunit gamma compare
MMJJ_RS06730 +1.1 3.9 ATP-binding cassette domain-containing protein compare
MMJJ_RS04235 +1.0 4.2 molybdate ABC transporter permease subunit compare
MMJJ_RS05360 +1.0 2.6 nickel-responsive transcriptional regulator NikR compare
MMJJ_RS00525 +1.0 2.8 Dabb family protein compare
MMJJ_RS04215 +1.0 7.4 DMT family transporter compare
MMJJ_RS05035 +0.9 2.9 4Fe-4S binding protein compare
MMJJ_RS06860 +0.9 0.7 hypothetical protein compare
MMJJ_RS04240 +0.9 6.7 molybdate ABC transporter substrate-binding protein compare
MMJJ_RS03395 +0.9 1.2 hypothetical protein compare
MMJJ_RS01820 +0.9 1.9 MJ1244 family protein compare
MMJJ_RS07485 +0.9 5.4 DedA family protein compare
MMJJ_RS09380 +0.8 2.1 hypothetical protein compare
MMJJ_RS06375 +0.8 1.2 UbiX family flavin prenyltransferase compare
MMJJ_RS06505 +0.8 1.3 prephenate dehydratase compare
MMJJ_RS01515 +0.8 1.7 DUF2178 domain-containing protein compare
MMJJ_RS08025 +0.8 1.8 hypothetical protein compare
MMJJ_RS06030 +0.8 2.5 4Fe-4S binding protein compare
MMJJ_RS09365 +0.8 1.7 hypothetical protein compare
MMJJ_RS04440 +0.8 1.6 hypothetical protein compare
MMJJ_RS06025 +0.8 5.4 4Fe-4S binding protein compare
MMJJ_RS08405 +0.8 4.9 nickel-dependent hydrogenase large subunit compare
MMJJ_RS06020 +0.8 2.7 hypothetical protein compare
MMJJ_RS07035 +0.7 1.2 glycosyl transferase compare
MMJJ_RS03360 +0.7 0.8 hypothetical protein compare
MMJJ_RS03445 +0.7 1.8 hypothetical protein compare
MMJJ_RS00065 +0.7 3.1 4Fe-4S dicluster domain-containing protein compare
MMJJ_RS03725 +0.7 1.4 sulfurtransferase TusA family protein compare
MMJJ_RS02095 +0.7 2.2 DUF2124 family protein compare
MMJJ_RS06100 +0.7 3.7 rubrerythrin compare
MMJJ_RS01970 +0.7 1.0 hypothetical protein compare
MMJJ_RS07185 +0.7 2.1 DUF371 domain-containing protein compare
MMJJ_RS00250 +0.7 3.1 sulfite exporter TauE/SafE family protein compare
MMJJ_RS02285 +0.7 1.7 class III signal peptide-containing protein compare
MMJJ_RS05370 +0.6 1.9 LysR family transcriptional regulator compare
MMJJ_RS08225 +0.6 2.3 peptidylprolyl isomerase compare
MMJJ_RS01055 +0.6 0.6 hypothetical protein compare
MMJJ_RS07650 +0.6 3.8 formate/nitrite transporter family protein compare
MMJJ_RS07660 +0.6 1.8 carbonic anhydrase compare
MMJJ_RS02905 +0.6 1.8 NifB/NifX family molybdenum-iron cluster-binding protein compare
MMJJ_RS09360 +0.6 2.4 hypothetical protein compare
MMJJ_RS08810 +0.6 0.5 DUF4040 domain-containing protein compare
MMJJ_RS05250 +0.6 2.9 HDIG domain-containing protein compare
MMJJ_RS07230 +0.6 1.7 coenzyme F420-reducing hydrogenase, FrhD protein compare
MMJJ_RS08715 +0.5 1.2 NAD-dependent epimerase/dehydratase family protein compare
MMJJ_RS07825 +0.5 2.1 YciI family protein compare
MMJJ_RS06005 +0.5 1.6 energy conserving hydrogenase EhbF compare
MMJJ_RS05610 +0.5 0.6 CDP-2,3-bis-(O-geranylgeranyl)-sn-glycerol synthase compare
MMJJ_RS03915 +0.5 1.6 hypothetical protein compare
MMJJ_RS01435 +0.5 2.4 4Fe-4S binding protein compare
MMJJ_RS01955 +0.5 3.8 hypothetical protein compare
MMJJ_RS00520 +0.5 1.5 PDGLE domain-containing protein compare
MMJJ_RS09295 +0.5 0.4 hypothetical protein compare
MMJJ_RS01155 +0.5 1.8 hypothetical protein compare
MMJJ_RS04295 +0.5 3.6 DUF2202 domain-containing protein compare
MMJJ_RS06540 +0.5 1.2 DUF2120 domain-containing protein compare
MMJJ_RS06635 +0.5 3.7 4Fe-4S binding protein compare
MMJJ_RS08550 +0.5 3.8 B12-binding domain-containing radical SAM protein compare
MMJJ_RS06035 +0.5 2.7 NADH-quinone oxidoreductase subunit B family protein compare
MMJJ_RS04340 +0.5 1.1 hypothetical protein compare
MMJJ_RS02885 +0.5 1.6 NifB/NifX family molybdenum-iron cluster-binding protein compare
MMJJ_RS07400 +0.5 1.2 2,5-diamino-6-(ribosylamino)-4(3H)-pyrimidinone 5'-phosphate reductase compare
MMJJ_RS09010 +0.5 1.3 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH compare
MMJJ_RS06925 +0.5 0.8 GMP synthase subunit A compare
MMJJ_RS09230 +0.5 0.6 hypothetical protein compare
MMJJ_RS05605 +0.5 1.2 hypothetical protein compare
MMJJ_RS06125 +0.5 3.0 methanogenesis marker 16 metalloprotein compare
MMJJ_RS06935 +0.4 2.6 GTP-binding protein compare
MMJJ_RS00555 +0.4 1.6 hypothetical protein compare
MMJJ_RS06000 +0.4 1.4 cation:proton antiporter subunit C compare
MMJJ_RS04865 +0.4 1.8 4Fe-4S binding protein compare
MMJJ_RS02000 +0.4 1.8 AzlD domain-containing protein compare
MMJJ_RS03960 +0.4 2.3 DUF2067 domain-containing protein compare
MMJJ_RS09090 +0.4 1.6 TetR/AcrR family transcriptional regulator compare
MMJJ_RS02970 +0.4 1.9 DUF378 domain-containing protein compare
MMJJ_RS05960 +0.4 2.0 DUF169 domain-containing protein compare
MMJJ_RS06105 +0.4 2.4 DUF99 family protein compare
MMJJ_RS09265 +0.4 0.7 hypothetical protein compare
MMJJ_RS07225 +0.4 2.0 coenzyme F420 hydrogenase subunit gamma compare
MMJJ_RS08370 +0.4 1.7 hypothetical protein compare
MMJJ_RS07455 +0.4 1.6 coenzyme F420-reducing hydrogenase, FrhD protein compare
MMJJ_RS07490 +0.4 1.0 HypC/HybG/HupF family hydrogenase formation chaperone compare
MMJJ_RS00140 +0.4 1.4 hypothetical protein compare
MMJJ_RS00515 +0.4 1.8 cobalt transporter CbiM compare
MMJJ_RS07765 +0.4 1.0 DMT family protein compare
MMJJ_RS03850 +0.4 1.0 nucleoside-diphosphate kinase compare
MMJJ_RS04525 +0.4 1.1 hypothetical protein compare
MMJJ_RS08385 +0.4 1.3 class II SORL domain-containing protein compare
MMJJ_RS04245 +0.4 1.9 flavoprotein compare
MMJJ_RS03520 +0.4 1.7 hypothetical protein compare
MMJJ_RS06275 +0.4 1.6 hypothetical protein compare
MMJJ_RS03745 +0.4 1.7 N-glycosylase/DNA lyase compare
MMJJ_RS07890 +0.4 1.0 pyrimidine dimer DNA glycosylase/endonuclease V compare
MMJJ_RS01405 +0.4 0.3 proline--tRNA ligase compare
MMJJ_RS05700 +0.4 1.6 metallophosphoesterase compare
MMJJ_RS05190 +0.4 2.0 gamma carbonic anhydrase family protein compare
MMJJ_RS03700 +0.4 1.8 hypothetical protein compare
MMJJ_RS03185 +0.4 0.5 alanine--tRNA ligase compare
MMJJ_RS05040 +0.4 1.4 7-carboxy-7-deazaguanine synthase QueE compare
MMJJ_RS03715 +0.4 0.9 hypothetical protein compare
MMJJ_RS07025 +0.4 1.5 tRNA (cytidine(56)-2'-O)-methyltransferase compare
MMJJ_RS00055 +0.4 1.9 CO dehydrogenase/acetyl-CoA synthase subunit delta compare
MMJJ_RS08805 +0.3 1.0 deoxyuridine 5'-triphosphate nucleotidohydrolase compare
MMJJ_RS00530 +0.3 1.4 cobalt ECF transporter T component CbiQ compare
MMJJ_RS06960 +0.3 2.4 CAP domain-containing protein compare
MMJJ_RS01020 +0.3 1.4 serine protease compare
MMJJ_RS01240 +0.3 1.4 excinuclease ABC subunit UvrC compare
MMJJ_RS06580 +0.3 2.0 alanine dehydrogenase compare
MMJJ_RS00390 +0.3 1.2 proteasome assembly chaperone family protein compare
MMJJ_RS07690 +0.3 2.1 glycosyltransferase family 4 protein compare
MMJJ_RS00820 +0.3 1.6 MtaA/CmuA family methyltransferase compare
MMJJ_RS08160 +0.3 0.8 tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO compare
MMJJ_RS07790 +0.3 1.4 hypothetical protein compare
MMJJ_RS05300 +0.3 2.6 potassium channel protein compare
MMJJ_RS01430 +0.3 2.0 hypothetical protein compare
MMJJ_RS03235 +0.3 0.9 hypothetical protein compare
MMJJ_RS03515 +0.3 1.2 GPR1/FUN34/YaaH family transporter compare
MMJJ_RS06465 +0.3 0.9 hypothetical protein compare
MMJJ_RS07590 +0.3 1.5 flap endonuclease-1 compare
MMJJ_RS04515 +0.3 2.1 HD domain-containing protein compare
MMJJ_RS07805 +0.3 1.6 ferredoxin family protein compare
MMJJ_RS04540 +0.3 1.8 site-2 protease family protein compare
MMJJ_RS07655 +0.3 2.2 hypothetical protein compare
MMJJ_RS00300 +0.3 1.3 chemotaxis protein CheC compare
MMJJ_RS06555 +0.3 1.4 ATP-binding cassette domain-containing protein compare
MMJJ_RS01675 +0.3 1.6 malate dehydrogenase compare
MMJJ_RS00785 +0.3 0.7 hypothetical protein compare
MMJJ_RS08745 +0.3 1.8 glycosyltransferase family 9 protein compare
MMJJ_RS01805 +0.3 1.3 sugar phosphate isomerase/epimerase compare
MMJJ_RS04545 +0.3 0.5 PadR family transcriptional regulator compare
MMJJ_RS00655 +0.3 0.8 CBS domain-containing protein compare
MMJJ_RS00150 +0.3 0.8 DUF2180 family protein compare
MMJJ_RS00825 +0.3 1.6 uroporphyrinogen decarboxylase family protein compare
MMJJ_RS04165 +0.3 1.5 sodium:solute symporter compare
MMJJ_RS03485 +0.3 1.7 radical SAM protein compare
MMJJ_RS03880 +0.3 2.1 TraB/GumN family protein compare
MMJJ_RS01650 +0.3 2.1 acetolactate synthase large subunit compare
MMJJ_RS06630 +0.3 1.3 4Fe-4S dicluster domain-containing protein compare
MMJJ_RS00340 +0.3 1.0 tRNA (pseudouridine(54)-N(1))-methyltransferase TrmY compare
MMJJ_RS04115 +0.3 1.3 HDIG domain-containing protein compare
MMJJ_RS08935 +0.3 0.2 TIGR00288 family NYN domain-containing protein compare
MMJJ_RS06015 +0.3 1.5 Na(+)/H(+) antiporter subunit B compare
MMJJ_RS05785 +0.3 0.9 flagellin compare
MMJJ_RS06085 +0.3 0.8 proteasome assembly chaperone family protein compare
MMJJ_RS03135 +0.3 1.1 CBS domain-containing protein compare
MMJJ_RS06075 +0.3 1.1 DNA-binding protein Alba compare
MMJJ_RS01210 +0.3 0.7 hypothetical protein compare
MMJJ_RS04595 +0.3 0.4 hypothetical protein compare
MMJJ_RS04100 +0.3 1.8 class III signal peptide-containing protein compare
MMJJ_RS08690 +0.3 1.4 phosphate ABC transporter substrate-binding protein compare
MMJJ_RS05340 +0.3 1.4 AAA family ATPase compare
MMJJ_RS03350 +0.3 0.5 hypothetical protein compare
MMJJ_RS01500 +0.3 0.6 transcriptional regulator compare
MMJJ_RS05955 +0.3 1.9 radical SAM protein compare
MMJJ_RS04850 +0.3 1.1 energy-coupling factor transporter transmembrane protein EcfT compare
MMJJ_RS08555 +0.3 1.6 redox-regulated ATPase YchF compare
MMJJ_RS02860 +0.3 0.6 site-specific integrase compare
MMJJ_RS00415 +0.3 0.4 DedA family protein compare
MMJJ_RS03090 +0.3 1.9 ECF transporter S component compare
MMJJ_RS03380 +0.2 0.6 hypothetical protein compare
MMJJ_RS02915 +0.2 1.1 hypothetical protein compare
MMJJ_RS01815 +0.2 0.5 DUF134 domain-containing protein compare
MMJJ_RS03610 +0.2 1.0 HIT family protein compare
MMJJ_RS05085 +0.2 0.9 hypothetical protein compare
MMJJ_RS08820 +0.2 0.9 pyridoxal phosphate-dependent aminotransferase compare
MMJJ_RS00115 +0.2 0.6 hypothetical protein compare
MMJJ_RS08250 +0.2 1.0 hydrogenase maturation peptidase HycI compare
MMJJ_RS04810 +0.2 1.0 nitroreductase family protein compare
MMJJ_RS08540 +0.2 1.4 archaeosortase family protein ArtE compare
MMJJ_RS08265 +0.2 1.4 iron ABC transporter permease compare
MMJJ_RS06585 +0.2 1.1 alanine racemase compare
MMJJ_RS03955 +0.2 1.4 hypothetical protein compare
MMJJ_RS05365 +0.2 1.0 DUF2798 domain-containing protein compare
MMJJ_RS07160 +0.2 1.2 M20 family metallo-hydrolase compare
MMJJ_RS03825 +0.2 1.7 DUF1624 domain-containing protein compare
MMJJ_RS03440 +0.2 1.4 hypothetical protein compare


Specific Phenotypes

For 12 genes in this experiment

For nitrogen source D-glucosamine in Methanococcus maripaludis JJ

For nitrogen source D-glucosamine across organisms