Experiment set4IT020 for Pantoea sp. MT58

Compare to:

nitrogen source Sodium nitrite 1mM

200 most important genes:

  gene name fitness t score description  
IAI47_15635 -4.9 -3.4 RNA polymerase-binding protein DksA compare
IAI47_07165 -4.6 -3.2 exodeoxyribonuclease I compare
IAI47_04895 -4.5 -6.2 pyridoxine 5'-phosphate synthase compare
IAI47_13195 -4.4 -6.1 DNA starvation/stationary phase protection protein Dps compare
IAI47_13695 -4.3 -1.6 colicin uptake protein TolR compare
IAI47_18530 -3.9 -4.0 thioredoxin TrxA compare
IAI47_13745 -3.6 -5.5 2-oxoglutarate dehydrogenase E1 component compare
IAI47_11190 -3.5 -11.0 nitrate- and nitrite sensing domain-containing protein compare
IAI47_04300 -3.5 -8.5 recombinase RecA compare
IAI47_16080 -3.4 -11.7 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
IAI47_09185 -3.4 -7.3 glutamine amidotransferase compare
IAI47_00895 -3.4 -18.4 phosphoenolpyruvate carboxylase compare
IAI47_05180 -3.2 -14.9 phosphoribosylformylglycinamidine cyclo-ligase compare
IAI47_16405 -3.2 -6.4 siderophore-iron reductase FhuF compare
IAI47_10520 -3.2 -5.0 pyridoxamine 5'-phosphate oxidase compare
IAI47_17220 -3.2 -22.9 glutamate synthase large subunit compare
IAI47_07060 -3.2 -12.6 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
IAI47_11160 -3.0 -8.7 uroporphyrinogen-III C-methyltransferase compare
IAI47_11170 -3.0 -14.5 nitrite reductase small subunit NirD compare
IAI47_14355 -3.0 -11.5 5-(carboxyamino)imidazole ribonucleotide synthase compare
IAI47_05275 -3.0 -7.7 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
IAI47_09805 -3.0 -14.6 bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG compare
IAI47_11175 -2.9 -7.6 ABC transporter ATP-binding protein compare
IAI47_11760 -2.9 -2.6 TonB-dependent siderophore receptor compare
IAI47_06235 -2.9 -8.1 4-phosphoerythronate dehydrogenase PdxB compare
IAI47_17225 -2.9 -15.4 sulfite reductase subunit alpha compare
IAI47_13770 -2.8 -13.3 citrate synthase compare
IAI47_09190 -2.8 -13.1 anthranilate synthase component 1 compare
IAI47_13690 -2.8 -1.4 cell envelope integrity protein TolA compare
IAI47_04120 -2.8 -15.8 GTP diphosphokinase compare
IAI47_12645 -2.8 -6.1 porin OmpA compare
IAI47_00430 -2.8 -16.4 DNA polymerase I compare
IAI47_11180 -2.8 -7.4 nitrate ABC transporter permease compare
IAI47_15115 -2.8 -12.0 glutamate-5-semialdehyde dehydrogenase compare
IAI47_09180 -2.8 -12.8 anthranilate phosphoribosyltransferase compare
IAI47_09010 -2.8 -9.7 formyltetrahydrofolate deformylase compare
IAI47_18315 -2.8 -7.0 HTH-type transcriptional regulator MetR compare
IAI47_05440 -2.8 -10.7 cysteine synthase A compare
IAI47_15810 -2.7 -2.6 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
IAI47_12945 -2.7 -14.3 ATP-dependent Clp protease ATP-binding subunit ClpA compare
IAI47_14350 -2.7 -8.7 5-(carboxyamino)imidazole ribonucleotide mutase compare
IAI47_18045 -2.7 -11.2 phosphoribosylamine--glycine ligase compare
IAI47_00780 -2.7 -5.3 6-phosphofructokinase compare
IAI47_08700 -2.6 -7.7 RNA chaperone ProQ compare
IAI47_04930 -2.6 -16.8 phosphoribosylformylglycinamidine synthase compare
IAI47_03860 -2.6 -12.6 diaminopimelate decarboxylase compare
IAI47_12705 -2.6 -13.0 quinone-dependent dihydroorotate dehydrogenase compare
IAI47_07090 -2.6 -9.8 histidinol dehydrogenase compare
IAI47_13740 -2.6 -2.2 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase compare
IAI47_15120 -2.6 -8.8 glutamate 5-kinase compare
IAI47_12215 -2.6 -12.5 dihydroorotase compare
IAI47_11185 -2.5 -10.5 ABC transporter substrate-binding protein compare
IAI47_05195 -2.5 -2.7 DnaA inactivator Hda compare
IAI47_18040 -2.5 -14.4 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
IAI47_08445 -2.5 -1.9 Holliday junction branch migration protein RuvA compare
IAI47_06275 -2.5 -14.5 amidophosphoribosyltransferase compare
IAI47_09240 -2.5 -4.0 HTH-type transcriptional regulator CysB compare
IAI47_17185 -2.5 -7.8 RNA polymerase factor sigma-54 compare
IAI47_16015 -2.5 -7.4 3-isopropylmalate dehydratase small subunit compare
IAI47_09175 -2.4 -12.6 bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF compare
IAI47_04410 -2.4 -14.2 bifunctional chorismate mutase/prephenate dehydratase compare
IAI47_12915 -2.4 -9.3 leucine-responsive transcriptional regulator Lrp compare
IAI47_00915 -2.4 -11.7 argininosuccinate synthase compare
IAI47_04160 -2.4 -12.1 phosphoadenylyl-sulfate reductase compare
IAI47_09170 -2.4 -12.9 tryptophan synthase subunit beta compare
IAI47_03240 -2.4 -5.1 TonB system transport protein ExbD compare
IAI47_13180 -2.4 -7.9 manganese-binding transcriptional regulator MntR compare
IAI47_02350 -2.4 -1.5 tRNA-Thr compare
IAI47_00905 -2.4 -10.6 N-acetyl-gamma-glutamyl-phosphate reductase compare
IAI47_17000 -2.3 -11.3 lipoprotein NlpI compare
IAI47_04150 -2.3 -11.7 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit compare
IAI47_16215 -2.3 -13.7 bifunctional aspartate kinase/homoserine dehydrogenase I compare
IAI47_16830 -2.3 -10.7 ornithine carbamoyltransferase compare
IAI47_05155 -2.3 -14.4 polyphosphate kinase 1 compare
IAI47_07085 -2.3 -11.0 histidinol-phosphate transaminase compare
IAI47_01040 -2.2 -9.3 threonine ammonia-lyase, biosynthetic compare
IAI47_04175 -2.2 -9.5 uroporphyrinogen-III C-methyltransferase compare
IAI47_18055 -2.2 -5.3 DNA-binding protein HU-alpha compare
IAI47_00920 -2.2 -12.1 argininosuccinate lyase compare
IAI47_16115 -2.2 -14.6 carbamoyl-phosphate synthase large subunit compare
IAI47_09275 -2.2 -7.7 orotidine-5'-phosphate decarboxylase compare
IAI47_07080 -2.2 -8.9 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
IAI47_16120 -2.2 -9.3 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
IAI47_00460 -2.2 -2.3 glutamate--ammonia ligase compare
IAI47_07065 -2.1 -9.5 imidazole glycerol phosphate synthase subunit HisF compare
IAI47_04110 -2.1 -16.2 two-component sensor histidine kinase BarA compare
IAI47_12470 -2.1 -11.4 UvrY/SirA/GacA family response regulator transcription factor compare
IAI47_00455 -2.1 -9.0 nitrogen regulation protein NR(II) compare
IAI47_15540 -2.1 -11.3 bifunctional uridylyltransferase/uridylyl-removing protein GlnD compare
IAI47_12865 -2.1 -10.0 3-phosphoserine/phosphohydroxythreonine transaminase compare
IAI47_07475 -2.1 -1.4 hypothetical protein compare
IAI47_16205 -2.1 -6.1 threonine synthase compare
IAI47_04190 -2.0 -6.8 adenylyl-sulfate kinase compare
IAI47_11200 -2.0 -5.4 DotU family type IV/VI secretion system protein compare
IAI47_04155 -2.0 -10.6 assimilatory sulfite reductase (NADPH) hemoprotein subunit compare
IAI47_00910 -2.0 -7.6 acetylglutamate kinase compare
IAI47_07095 -2.0 -7.1 ATP phosphoribosyltransferase compare
IAI47_05520 -2.0 -1.6 tRNA-Ala compare
IAI47_16390 -2.0 -1.0 tRNA-Leu compare
IAI47_07070 -2.0 -6.6 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
IAI47_01035 -2.0 -12.2 dihydroxy-acid dehydratase compare
IAI47_05465 -2.0 -5.6 bile acid:sodium symporter compare
IAI47_00900 -1.9 -9.3 acetylornithine deacetylase compare
IAI47_14730 -1.9 -1.2 exodeoxyribonuclease VII small subunit compare
IAI47_08085 -1.9 -5.2 helix-turn-helix domain-containing protein compare
IAI47_16210 -1.9 -8.5 homoserine kinase compare
IAI47_07075 -1.9 -7.0 imidazole glycerol phosphate synthase subunit HisH compare
IAI47_09165 -1.9 -7.4 tryptophan synthase subunit alpha compare
IAI47_03975 -1.9 -10.5 amino-acid N-acetyltransferase compare
IAI47_02695 -1.8 -8.6 3'(2'),5'-bisphosphate nucleotidase CysQ compare
IAI47_01050 -1.8 -11.2 ketol-acid reductoisomerase compare
IAI47_14075 -1.8 -2.7 transcription antiterminator/RNA stability regulator CspE compare
IAI47_16195 -1.8 -8.2 transaldolase compare
IAI47_21450 -1.8 -1.4 general stress protein compare
IAI47_03595 -1.8 -6.2 YggS family pyridoxal phosphate-dependent enzyme compare
IAI47_08705 -1.8 -10.6 carboxy terminal-processing peptidase compare
IAI47_16000 -1.8 -11.9 2-isopropylmalate synthase compare
IAI47_00450 -1.8 -8.8 nitrogen regulation protein NR(I) compare
IAI47_14945 -1.7 -3.2 pyrroline-5-carboxylate reductase compare
IAI47_05070 -1.7 -1.1 outer membrane protein assembly factor BamB compare
IAI47_15595 -1.7 -1.5 Fe(3+)-hydroxamate ABC transporter permease FhuB compare
IAI47_13685 -1.7 -3.9 Tol-Pal system protein TolB compare
IAI47_00930 -1.7 -8.6 DNA-binding transcriptional regulator OxyR compare
IAI47_13155 -1.7 -2.9 H-NS histone family protein compare
IAI47_03725 -1.7 -6.9 phosphoglycerate dehydrogenase compare
IAI47_17005 -1.7 -7.1 polyribonucleotide nucleotidyltransferase compare
IAI47_00515 -1.7 -2.3 DNA-directed RNA polymerase subunit omega compare
IAI47_09360 -1.7 -1.6 peptide ABC transporter ATP-binding protein SapF compare
IAI47_03235 -1.7 -4.4 tol-pal system-associated acyl-CoA thioesterase compare
IAI47_21335 -1.7 -4.1 RepB family plasmid replication initiator protein compare
IAI47_00300 -1.6 -1.3 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
IAI47_00880 -1.6 -9.2 cystathionine gamma-synthase compare
IAI47_03855 -1.6 -5.3 LysR family transcriptional regulator compare
IAI47_18015 -1.6 -9.4 homoserine O-succinyltransferase compare
IAI47_13900 -1.6 -10.1 asparagine synthase B compare
IAI47_00600 -1.6 -7.1 orotate phosphoribosyltransferase compare
IAI47_16870 -1.6 -6.0 2-iminobutanoate/2-iminopropanoate deaminase compare
IAI47_01030 -1.6 -9.0 branched-chain amino acid transaminase compare
IAI47_07550 -1.6 -1.5 tRNA-Asn compare
IAI47_08450 -1.6 -3.9 Holliday junction branch migration DNA helicase RuvB compare
IAI47_16005 -1.6 -7.7 3-isopropylmalate dehydrogenase compare
IAI47_10480 -1.5 -5.9 HPP family protein compare
IAI47_16010 -1.5 -8.8 3-isopropylmalate dehydratase large subunit compare
IAI47_15985 -1.5 -5.8 acetolactate synthase small subunit compare
IAI47_02590 -1.5 -4.8 RNA chaperone Hfq compare
IAI47_13290 -1.5 -8.2 DNA-binding protein YbiB conserved
IAI47_11205 -1.5 -7.0 type VI secretion system membrane subunit TssM compare
IAI47_13925 -1.4 -2.4 tRNA-Met compare
IAI47_16860 -1.4 -7.9 aspartate carbamoyltransferase compare
IAI47_00110 -1.4 -5.2 glyoxylate/hydroxypyruvate reductase GhrB compare
IAI47_15005 -1.4 -3.3 hypothetical protein compare
IAI47_15605 -1.4 -1.2 Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC compare
IAI47_18830 -1.4 -2.1 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
IAI47_03680 -1.3 -6.9 transketolase compare
IAI47_15340 -1.3 -5.7 hydroxyacylglutathione hydrolase compare
IAI47_11165 -1.3 -7.5 nitrate reductase conserved
IAI47_17205 -1.3 -1.5 PTS phosphocarrier protein NPr compare
IAI47_05745 -1.3 -1.8 protease FtsH-inhibitory lysogeny factor CIII compare
IAI47_02515 -1.3 -4.1 transcriptional regulator ArgR compare
IAI47_14930 -1.3 -2.2 shikimate kinase AroL compare
IAI47_06170 -1.2 -3.0 YfcL family protein compare
IAI47_16350 -1.2 -5.4 phosphoserine phosphatase compare
IAI47_07965 -1.2 -3.8 transcriptional regulator RcsA compare
IAI47_13545 -1.2 -5.5 6-phosphogluconolactonase compare
IAI47_08440 -1.2 -1.0 crossover junction endodeoxyribonuclease RuvC compare
IAI47_15990 -1.2 -9.0 acetolactate synthase 3 large subunit compare
IAI47_08165 -1.2 -5.5 flagella biosynthesis regulatory protein FliZ compare
IAI47_12175 -1.2 -2.7 anti-sigma-28 factor FlgM compare
IAI47_18400 -1.2 -1.9 tyrosine recombinase XerC compare
IAI47_18535 -1.1 -7.3 ATP-dependent RNA helicase RhlB compare
IAI47_05315 -1.1 -4.9 response regulator compare
IAI47_06355 -1.1 -5.5 transcriptional regulator LrhA compare
IAI47_01045 -1.1 -4.1 HTH-type transcriptional activator IlvY compare
IAI47_15600 -1.1 -1.9 Fe(3+)-hydroxamate ABC transporter substrate-binding protein FhuD compare
IAI47_10925 -1.0 -2.5 EAL domain-containing protein compare
IAI47_21035 -1.0 -2.9 TetR/AcrR family transcriptional regulator compare
IAI47_12355 -1.0 -1.6 hydroxymyristoyl-ACP dehydratase compare
IAI47_05765 -1.0 -1.9 hypothetical protein compare
IAI47_16795 -1.0 -4.3 leucyl aminopeptidase compare
IAI47_01120 -1.0 -4.2 manganese efflux pump MntP compare
IAI47_15105 -1.0 -1.3 hypothetical protein compare
IAI47_14495 -1.0 -3.2 hypothetical protein compare
IAI47_13840 -1.0 -1.9 replication initiation negative regulator SeqA compare
IAI47_00510 -1.0 -2.6 bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase compare
IAI47_01015 -1.0 -2.5 ilv operon leader peptide compare
IAI47_10845 -0.9 -1.9 major outer membrane lipoprotein compare
IAI47_06475 -0.9 -3.3 transcriptional regulator RcsB compare
IAI47_21655 -0.9 -0.9 LacI family DNA-binding transcriptional regulator compare
IAI47_08225 -0.9 -4.7 phosphate starvation-inducible protein PhoH compare
IAI47_12780 -0.9 -6.8 L,D-transpeptidase compare
IAI47_05320 -0.9 -6.3 nitrate/nitrite two-component system sensor histidine kinase NarQ compare
IAI47_02765 -0.9 -5.8 metalloprotease PmbA compare
IAI47_11600 -0.9 -2.5 protein of avirulence locus ImpE compare
IAI47_18410 -0.9 -1.9 diaminopimelate epimerase compare
IAI47_01005 -0.9 -5.2 DUF413 domain-containing protein compare
IAI47_08200 -0.9 -1.9 hypothetical protein compare
IAI47_18405 -0.9 -2.8 DUF484 domain-containing protein compare
IAI47_12655 -0.9 -5.7 Lon protease family protein compare
IAI47_01345 -0.9 -6.0 oligopeptidase A compare
IAI47_10470 -0.9 -1.6 electron transport complex subunit E compare


Specific Phenotypes

For 16 genes in this experiment

For nitrogen source Sodium nitrite in Pantoea sp. MT58

For nitrogen source Sodium nitrite across organisms