Experiment set4IT020 for Sphingomonas koreensis DSMZ 15582

Compare to:

LB with Gentamicin sulfate salt 0.005 mg/ml

200 most detrimental genes:

  gene name fitness t score description  
Ga0059261_1762 +0.7 1.8 hypothetical protein compare
Ga0059261_0411 +0.7 1.8 Uncharacterized conserved protein compare
Ga0059261_0237 +0.7 3.1 phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Ga0059261_2368 +0.6 1.5 Phage baseplate assembly protein W compare
Ga0059261_0433 +0.6 2.7 Uncharacterized protein conserved in bacteria compare
Ga0059261_0242 +0.6 1.5 hypothetical protein compare
Ga0059261_0083 +0.5 1.2 aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B (EC 6.3.5.-) compare
Ga0059261_3992 +0.5 1.7 Uncharacterized protein conserved in bacteria compare
Ga0059261_1756 +0.5 1.3 Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes compare
Ga0059261_0720 +0.5 1.7 Predicted small integral membrane protein compare
Ga0059261_0354 +0.5 1.8 6-phosphogluconate dehydratase (EC 4.2.1.12) compare
Ga0059261_1527 +0.5 1.4 hypothetical protein compare
Ga0059261_0045 +0.5 2.2 hypothetical protein compare
Ga0059261_1799 +0.5 2.1 Uncharacterized protein conserved in bacteria (DUF2059) compare
Ga0059261_0864 +0.5 1.7 hypothetical protein compare
Ga0059261_1914 +0.5 1.7 Acetyltransferases compare
Ga0059261_1214 +0.5 1.3 hypothetical protein compare
Ga0059261_3807 +0.5 2.4 Uncharacterized conserved protein compare
Ga0059261_0272 +0.5 2.2 Uncharacterized small protein compare
Ga0059261_0657 +0.5 1.0 Uncharacterized protein conserved in bacteria compare
Ga0059261_4046 +0.4 1.5 Response regulator receiver domain compare
Ga0059261_1380 +0.4 3.6 Membrane protease subunits, stomatin/prohibitin homologs compare
Ga0059261_1016 +0.4 1.2 Cupin domain compare
Ga0059261_1115 +0.4 1.1 Chemotaxis protein; stimulates methylation of MCP proteins compare
Ga0059261_1612 +0.4 1.0 hypothetical protein compare
Ga0059261_2019 +0.4 1.9 Uncharacterized protein conserved in bacteria compare
Ga0059261_0344 +0.4 1.7 Molecular chaperone (small heat shock protein) compare
Ga0059261_0464 +0.4 1.0 hypothetical protein compare
Ga0059261_0405 +0.4 2.6 Uncharacterized conserved protein compare
Ga0059261_1145 +0.4 1.1 flagella basal body P-ring formation protein FlgA compare
Ga0059261_3702 +0.4 2.4 NAD(P)H:quinone oxidoreductase, type IV compare
Ga0059261_3251 +0.4 1.5 Transcriptional regulator compare
Ga0059261_2413 +0.4 1.0 hypothetical protein compare
Ga0059261_1847 +0.4 1.7 hypothetical protein compare
Ga0059261_1962 +0.4 0.8 RNase HII (EC 3.1.26.4) compare
Ga0059261_1138 +0.4 1.5 hypothetical protein compare
Ga0059261_2916 +0.4 1.6 P-type conjugative transfer protein TrbJ compare
Ga0059261_0846 +0.4 2.1 Zn-dependent alcohol dehydrogenases, class III compare
Ga0059261_3833 +0.3 1.0 hypothetical protein compare
Ga0059261_1406 +0.3 1.6 Acetyltransferase (GNAT) family compare
Ga0059261_3659 +0.3 1.7 PqqD family protein, HPr-rel-A system compare
Ga0059261_3058 +0.3 2.3 hypothetical protein compare
Ga0059261_1881 +0.3 1.8 Predicted membrane protein compare
Ga0059261_0911 +0.3 1.6 Domain of unknown function (DUF3597) compare
Ga0059261_3441 +0.3 1.6 hypothetical protein compare
Ga0059261_2618 +0.3 1.1 Protein of unknown function (DUF2721) compare
Ga0059261_0390 +0.3 0.8 Ribbon-helix-helix protein, copG family compare
Ga0059261_2090 +0.3 1.5 flagellar basal-body rod protein FlgC compare
Ga0059261_3285 +0.3 1.4 Acyl dehydratase compare
Ga0059261_0750 +0.3 1.7 NADH:ubiquinone oxidoreductase subunit 3 (chain A) compare
Ga0059261_3604 +0.3 1.2 Uncharacterized protein conserved in bacteria compare
Ga0059261_2466 +0.3 2.2 DnaJ domain/DnaJ C terminal domain compare
Ga0059261_2097 +0.3 1.6 Rod binding protein compare
Ga0059261_1841 +0.3 2.4 Putative amidotransferase compare
Ga0059261_2547 +0.3 0.6 tRNA compare
Ga0059261_1538 +0.3 1.1 Predicted transcriptional regulators compare
Ga0059261_3134 +0.3 2.0 hypothetical protein compare
Ga0059261_1260 +0.3 2.3 cobaltochelatase CobT subunit (EC 6.6.1.2) compare
Ga0059261_1126 +0.3 1.4 Response regulator compare
Ga0059261_1146 +0.3 1.5 Flagellar basal body L-ring protein compare
Ga0059261_4007 +0.3 0.7 Transcriptional regulators compare
Ga0059261_2713 +0.3 0.7 hypothetical protein compare
Ga0059261_2086 +0.3 0.6 SAF-like compare
Ga0059261_1448 +0.3 1.9 Uncharacterized protein conserved in bacteria compare
Ga0059261_0557 +0.3 1.6 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Ga0059261_0906 +0.3 1.6 Uncharacterized conserved protein compare
Ga0059261_0357 +0.3 1.0 hypothetical protein compare
Ga0059261_1381 +0.3 1.3 Membrane protease subunits, stomatin/prohibitin homologs compare
Ga0059261_2736 +0.3 1.3 hypothetical protein compare
Ga0059261_1497 +0.3 1.6 required for sulfate utilization, putative electron source for sulfite reductase CysI (from data) compare
Ga0059261_3433 +0.3 1.7 ATPases involved in chromosome partitioning compare
Ga0059261_3661 +0.3 2.1 Uncharacterised nucleotidyltransferase compare
Ga0059261_2581 +0.3 1.2 Uncharacterized conserved protein (DUF2285) compare
Ga0059261_2548 +0.3 1.0 tRNA compare
Ga0059261_4203 +0.3 1.4 Arabinose efflux permease compare
Ga0059261_1972 +0.3 1.4 Domain of unknown function (DUF3814) compare
Ga0059261_2737 +0.3 1.7 UTP--GlnB (protein PII) uridylyltransferase, GlnD compare
Ga0059261_2966 +0.3 1.3 2-deoxy-D-gluconate 3-dehydrogenase compare
Ga0059261_0298 +0.3 1.9 TonB family C-terminal domain compare
Ga0059261_3381 +0.3 1.5 Arabinose efflux permease compare
Ga0059261_3488 +0.3 0.5 Histidine kinase/HAMP domain compare
Ga0059261_1548 +0.3 1.7 Uncharacterized protein involved in tolerance to divalent cations compare
Ga0059261_0351 +0.3 2.0 N-acetylglutamylphosphate reductase (EC 1.2.1.38) (from data) compare
Ga0059261_1513 +0.3 1.3 hypothetical protein compare
Ga0059261_0690 +0.3 0.6 Acetyltransferases compare
Ga0059261_2347 +0.3 0.7 hypothetical protein compare
Ga0059261_1763 +0.3 0.8 hypothetical protein compare
Ga0059261_3971 +0.3 0.7 Uncharacterized protein conserved in bacteria compare
Ga0059261_3569 +0.2 0.9 chaperone protein DnaJ compare
Ga0059261_2988 +0.2 1.7 TonB family C-terminal domain compare
Ga0059261_0493 +0.2 0.6 hypothetical protein compare
Ga0059261_3512 +0.2 0.6 glutamate 5-kinase (EC 2.7.2.11) (from data) compare
Ga0059261_1361 +0.2 2.1 sugar transferase, PEP-CTERM system associated/exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase compare
Ga0059261_4192 +0.2 1.0 ATPases involved in chromosome partitioning compare
Ga0059261_3432 +0.2 1.3 leucyl/phenylalanyl-tRNA--protein transferase compare
Ga0059261_2187 +0.2 1.9 Cell Wall Hydrolase compare
Ga0059261_1803 +0.2 1.4 Domain of unknown function (DUF4136) compare
Ga0059261_1034 +0.2 1.5 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E compare
Ga0059261_0684 +0.2 1.3 Uncharacterized protein conserved in bacteria compare
Ga0059261_3366 +0.2 1.1 hypothetical protein compare
Ga0059261_3240 +0.2 1.6 Flp pilus assembly protein TadB compare
Ga0059261_0834 +0.2 1.3 hypothetical protein compare
Ga0059261_1546 +0.2 1.7 MerC mercury resistance protein compare
Ga0059261_0956 +0.2 1.6 Uncharacterized protein conserved in bacteria compare
Ga0059261_4171 +0.2 1.2 redox-sensitive transcriptional activator SoxR compare
Ga0059261_2044 +0.2 1.9 peptide chain release factor 3 compare
Ga0059261_3280 +0.2 0.7 Uncharacterized conserved protein compare
Ga0059261_3367 +0.2 1.2 hypothetical protein compare
Ga0059261_2613 +0.2 1.6 AraC-type DNA-binding domain-containing proteins compare
Ga0059261_3283 +0.2 1.9 hypothetical protein compare
Ga0059261_3425 +0.2 1.1 Uncharacterized protein conserved in bacteria compare
Ga0059261_1286 +0.2 1.5 phasin family protein compare
Ga0059261_1079 +0.2 1.8 Chemotaxis protein histidine kinase and related kinases compare
Ga0059261_0647 +0.2 1.3 tRNA pseudouridine(38-40) synthase compare
Ga0059261_0305 +0.2 1.2 bacterioferritin compare
Ga0059261_0064 +0.2 1.4 Domain of unknown function (DUF4112) compare
Ga0059261_4015 +0.2 1.3 Putative transcriptional regulator compare
Ga0059261_3081 +0.2 1.7 Uncharacterized conserved small protein compare
Ga0059261_3165 +0.2 1.5 PEP phosphonomutase and related enzymes compare
Ga0059261_3164 +0.2 1.3 Protein of unknown function (DUF3297) compare
Ga0059261_1768 +0.2 0.6 Sigma-70 region 2 compare
Ga0059261_2436 +0.2 1.3 hypothetical protein compare
Ga0059261_2425 +0.2 1.8 Uncharacterized protein conserved in bacteria compare
Ga0059261_0203 +0.2 1.1 FKBP-type peptidyl-prolyl cis-trans isomerase compare
Ga0059261_1315 +0.2 1.2 Alpha/beta hydrolase family compare
Ga0059261_3059 +0.2 1.5 Uncharacterized conserved protein compare
Ga0059261_1355 +0.2 1.8 Cupin-like domain compare
Ga0059261_0266 +0.2 0.5 hypothetical protein compare
Ga0059261_0656 +0.2 0.8 Predicted dehydrogenases and related proteins compare
Ga0059261_2281 +0.2 1.1 Phytanoyl-CoA dioxygenase (PhyH) compare
Ga0059261_3368 +0.2 1.2 Predicted transcriptional regulator compare
Ga0059261_1043 +0.2 0.7 Uncharacterized protein conserved in bacteria compare
Ga0059261_3491 +0.2 1.6 hypothetical protein compare
Ga0059261_3335 +0.2 0.8 hypothetical protein compare
Ga0059261_2253 +0.2 1.7 Arylamine N-acetyltransferase compare
Ga0059261_0685 +0.2 0.4 pyruvate kinase compare
Ga0059261_0781 +0.2 0.7 hypothetical protein compare
Ga0059261_1174 +0.2 0.9 Putative transposase of IS4/5 family (DUF4096) compare
Ga0059261_1398 +0.2 1.4 Sulfite oxidase and related enzymes compare
Ga0059261_3022 +0.2 0.8 MerT mercuric transport protein compare
Ga0059261_2939 +0.2 1.3 Uncharacterized protein conserved in bacteria compare
Ga0059261_0672 +0.2 1.5 Domain of unknown function (DUF955) compare
Ga0059261_0380 +0.2 1.1 Uncharacterized conserved small protein compare
Ga0059261_2365 +0.2 0.7 Mu-like prophage FluMu protein gp41 compare
Ga0059261_0379 +0.2 0.6 DNA binding domain, excisionase family compare
Ga0059261_4161 +0.2 1.6 Predicted phosphoesterase compare
Ga0059261_3817 +0.2 1.3 Predicted NTP pyrophosphohydrolase compare
Ga0059261_3882 +0.2 0.6 dimethyladenosine transferase (EC 2.1.1.-) compare
Ga0059261_3076 +0.2 1.2 P-type conjugative transfer protein TrbJ compare
Ga0059261_0383 +0.2 1.5 Type IV secretory pathway, TrbF components compare
Ga0059261_3696 +0.2 1.1 hypothetical protein compare
Ga0059261_2711 +0.2 1.0 homoserine dehydrogenase (EC 1.1.1.3) (from data) compare
Ga0059261_2462 +0.2 1.0 Predicted transcriptional regulators compare
Ga0059261_0691 +0.2 1.4 hypothetical protein compare
Ga0059261_2981 +0.2 1.8 Uncharacterized protein conserved in bacteria compare
Ga0059261_3427 +0.2 1.3 Uncharacterized conserved protein compare
Ga0059261_2182 +0.2 1.5 Predicted metal-dependent hydrolase compare
Ga0059261_2980 +0.2 1.9 Outer membrane protein compare
Ga0059261_2188 +0.2 0.6 Uncharacterized conserved protein compare
Ga0059261_2914 +0.2 0.8 Type IV secretory pathway, TrbD component compare
Ga0059261_0451 +0.2 0.8 hypothetical protein compare
Ga0059261_0907 +0.2 1.1 Predicted transcriptional regulators compare
Ga0059261_2076 +0.2 0.3 hypothetical protein compare
Ga0059261_1939 +0.2 0.3 putative phosphoesterase compare
Ga0059261_1049 +0.2 1.1 PEP-CTERM protein-sorting domain compare
Ga0059261_0127 +0.2 1.0 Metal-dependent hydrolases of the beta-lactamase superfamily I compare
Ga0059261_4134 +0.2 0.9 tRNA compare
Ga0059261_0659 +0.2 0.7 transcriptional regulator, HxlR family compare
Ga0059261_3406 +0.2 1.1 Uncharacterized protein conserved in bacteria compare
Ga0059261_2989 +0.2 1.4 AraC-type DNA-binding domain-containing proteins compare
Ga0059261_2271 +0.2 1.4 branched-chain alpha-keto acid dehydrogenase E2 component (EC 2.3.1.168) compare
Ga0059261_1587 +0.2 1.3 hypothetical protein compare
Ga0059261_2400 +0.2 1.1 Uncharacterized conserved protein compare
Ga0059261_3027 +0.2 0.9 Predicted transcriptional regulators compare
Ga0059261_1423 +0.2 1.6 Trypsin-like peptidase domain compare
Ga0059261_1040 +0.2 1.4 fumarase, class II (EC 4.2.1.2) compare
Ga0059261_2875 +0.2 1.4 Transcriptional regulators compare
Ga0059261_2531 +0.2 0.8 conserved hypothetical integral membrane protein compare
Ga0059261_1372 +0.2 1.4 luciferase family oxidoreductase, group 1 compare
Ga0059261_2766 +0.2 1.2 2'-5' RNA ligase compare
Ga0059261_1439 +0.2 1.2 Uncharacterized protein conserved in bacteria compare
Ga0059261_1231 +0.2 1.6 Sensors of blue-light using FAD compare
Ga0059261_0220 +0.2 1.2 L-serine dehydratase, iron-sulfur-dependent, single chain form compare
Ga0059261_0517 +0.2 1.5 Arabinose efflux permease compare
Ga0059261_2029 +0.2 1.1 diguanylate cyclase (GGDEF) domain compare
Ga0059261_1714 +0.2 1.1 translation initiation factor IF-1 compare
Ga0059261_2943 +0.2 0.9 hypothetical protein compare
Ga0059261_1188 +0.2 1.4 hypothetical protein compare
Ga0059261_1924 +0.2 1.7 Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes compare
Ga0059261_3831 +0.2 1.2 Putative NADPH-quinone reductase (modulator of drug activity B) compare
Ga0059261_0654 +0.2 0.9 Chemotaxis signal transduction protein compare
Ga0059261_0829 +0.2 1.3 Transcriptional regulators compare
Ga0059261_4195 +0.2 1.4 polysaccharide deacetylase family protein, PEP-CTERM locus subfamily compare
Ga0059261_3009 +0.2 1.1 Acetyltransferase (GNAT) domain compare
Ga0059261_4032 +0.2 0.8 Sensors of blue-light using FAD compare
Ga0059261_2215 +0.2 0.6 Thiamine monophosphate synthase compare
Ga0059261_0926 +0.2 0.9 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase compare
Ga0059261_1574 +0.2 0.8 Superfamily II DNA and RNA helicases compare
Ga0059261_0056 +0.2 1.0 Predicted transcriptional regulator compare
Ga0059261_3886 +0.2 1.1 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare


Specific Phenotypes

For 3 genes in this experiment

For stress Gentamicin sulfate salt in Sphingomonas koreensis DSMZ 15582

For stress Gentamicin sulfate salt across organisms