Experiment set4IT019 for Pseudomonas syringae pv. syringae B728a

Compare to:

KB with capsaicin 0.25 mg/ml

200 most important genes:

  gene name fitness t score description  
Psyr_1544 -4.7 -3.3 SirA-like protein compare
Psyr_0951 -4.4 -5.2 UBA/THIF-type NAD/FAD binding fold:MoeZ/MoeB compare
Psyr_4740 -4.3 -8.6 thiazole-phosphate synthase compare
Psyr_3008 -4.1 -9.8 Undecaprenyl-diphosphatase compare
Psyr_1613 -4.0 -5.4 septum site-determining protein MinC compare
Psyr_4340 -3.7 -9.4 phosphomethylpyrimidine kinase, putative compare
Psyr_4341 -3.7 -9.4 thiamine-phosphate diphosphorylase compare
Psyr_4683 -3.3 -5.5 dethiobiotin synthase compare
Psyr_4686 -3.1 -6.5 8-amino-7-oxononanoate synthase compare
Psyr_0917 -2.8 -12.1 ABC-2 compare
Psyr_0454 -2.8 -6.5 adenosylmethionine-8-amino-7-oxononanoate aminotransferase apoenzyme compare
Psyr_0918 -2.7 -13.0 ABC transporter compare
Psyr_4687 -2.6 -9.2 biotin synthase compare
Psyr_1373 -2.5 -3.7 Peptidoglycan-binding LysM:Peptidase M23B compare
Psyr_4362 -2.4 -4.6 Rare lipoprotein A compare
Psyr_0487 -2.4 -3.8 glutathione synthase compare
Psyr_4091 -2.3 -5.4 8-oxo-dGTPase compare
Psyr_0826 -2.3 -8.0 glucose-6-phosphate isomerase compare
Psyr_4991 -2.2 -3.5 hypothetical protein compare
Psyr_4684 -2.2 -3.5 biotin synthesis protein BioC compare
Psyr_4622 -2.1 -5.7 Nucleotidyl transferase compare
Psyr_3808 -1.9 -2.9 hypothetical protein compare
Psyr_0565 -1.9 -6.6 Protein of unknown function UPF0126 compare
Psyr_0831 -1.8 -3.6 Two-component response regulator CbrB compare
Psyr_2080 -1.8 -6.5 aminodeoxychorismate synthase, subunit I compare
Psyr_4822 -1.7 -4.2 Helix-turn-helix, Fis-type:Nitrogen regulation protein NR(I) compare
Psyr_5132 -1.7 -2.6 Glucose-inhibited division protein A subfamily compare
Psyr_2854 -1.7 -5.5 conserved hypothetical protein compare
Psyr_0014 -1.7 -4.6 lipid A biosynthesis acyltransferase compare
Psyr_0849 -1.7 -9.5 CDP-diacylglycerol--serine O-phosphatidyltransferase compare
Psyr_1748 -1.6 -6.5 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Psyr_3701 -1.5 -3.0 thioredoxin, putative compare
Psyr_1885 -1.5 -2.2 hypothetical protein compare
Psyr_2980 -1.5 -2.5 UDP-glucose pyrophosphorylase compare
Psyr_4408 -1.4 -7.6 Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal:Histidine kinase:Histidine kinase compare
Psyr_0571 -1.4 -3.5 tRNA isopentenyltransferase compare
Psyr_1816 -1.4 -4.5 transcriptional regulator, GntR family compare
Psyr_4203 -1.4 -1.9 SsrA-binding protein compare
Psyr_0447 -1.4 -3.2 malonate decarboxylase subunit, putative compare
Psyr_5135 -1.3 -2.1 Protein of unknown function DUF37 compare
Psyr_1227 -1.3 -3.0 Queuosine biosynthesis protein compare
Psyr_1650 -1.3 -2.9 aminodeoxychorismate lyase apoprotein compare
Psyr_0976 -1.3 -4.4 Malate:quinone-oxidoreductase compare
Psyr_1268 -1.3 -5.4 extracellular solute-binding protein, family 3:SLT compare
Psyr_0574 -1.3 -4.7 protease FtsH subunit HflK compare
Psyr_3954 -1.3 -4.2 GTP-binding protein LepA compare
Psyr_0529 -1.2 -4.2 Glycosyl transferase, group 1 compare
Psyr_4424 -1.2 -5.5 Propeptide, PepSY amd peptidase M4:PepSY-associated TM helix compare
Psyr_2360 -1.2 -2.8 CBS compare
Psyr_1751 -1.2 -4.6 PpiC-type peptidyl-prolyl cis-trans isomerase compare
Psyr_2151 -1.2 -1.4 monosaccharide ABC transporter substrate-binding protein, CUT2 family compare
Psyr_0281 -1.2 -3.6 ABC transporter compare
Psyr_0034 -1.1 -3.6 tryptophan synthase, beta chain compare
Psyr_0383 -1.1 -1.7 Twin-arginine translocation protein TatB compare
Psyr_0378 -1.1 -6.6 Glycosyl transferase, family 2 compare
Psyr_0579 -1.1 -7.4 RNAse R compare
Psyr_0524 -1.1 -2.6 Lipopolysaccharide kinase compare
Psyr_0575 -1.1 -3.2 protease FtsH subunit HflC compare
Psyr_0941 -1.1 -4.9 Conserved hypothetical protein 92 compare
Psyr_1419 -1.1 -2.3 preQ(0) biosynthesis protein QueC compare
Psyr_4754 -1.1 -2.0 16S rRNA m(2)G-966 methyltransferase compare
Psyr_4893 -1.1 -1.8 imidazole glycerol phosphate synthase subunit hisF compare
Psyr_3691 -1.1 -5.1 conserved hypothetical protein compare
Psyr_3193 -1.1 -2.2 Transcription factor jumonji, jmjC compare
Psyr_1408 -1.1 -2.0 Holliday junction endonuclease RuvC compare
Psyr_3581 -1.1 -4.5 ribosomal large subunit pseudouridine synthase B compare
Psyr_3795 -1.1 -1.9 hypothetical protein compare
Psyr_1667 -1.0 -4.2 Colicin V production protein compare
Psyr_0184 -1.0 -1.8 Protein of unknown function DUF484 compare
Psyr_2285 -1.0 -1.7 Twin-arginine translocation pathway signal compare
Psyr_1108 -1.0 -6.2 glyceraldehyde-3-phosphate dehydrogenase compare
Psyr_3680 -1.0 -3.8 hydrogenobyrinic acid a,c-diamide synthase (glutamine-hydrolysing) / cobyrinate a,c-diamide synthase compare
Psyr_4804 -1.0 -2.1 conserved hypothetical protein compare
Psyr_0724 -1.0 -1.7 conserved hypothetical protein compare
Psyr_1852 -1.0 -2.1 conserved hypothetical protein compare
Psyr_1424 -1.0 -1.6 Peptidase S24, S26A and S26B compare
Psyr_1910 -1.0 -4.0 VacJ-like lipoprotein compare
Psyr_0827 -1.0 -3.2 pantothenate synthetase compare
Psyr_3867 -1.0 -2.5 hypothetical protein compare
Psyr_0377 -1.0 -4.8 Periplasmic glucan biosynthesis protein, MdoG compare
Psyr_4673 -0.9 -1.9 Coenzyme PQQ synthesis D compare
Psyr_1581 -0.9 -2.8 conserved hypothetical protein compare
Psyr_1864 -0.9 -3.6 spermidine synthase compare
Psyr_4278 -0.9 -2.6 regulatory protein, LuxR compare
Psyr_2071 -0.9 -1.7 outer membrane lipoprotein OprI compare
Psyr_0532 -0.9 -3.5 conserved hypothetical protein compare
Psyr_2471 -0.9 -1.3 hydroxymethylglutaryl-CoA lyase compare
Psyr_0303 -0.9 -2.2 Ferredoxin:Oxidoreductase FAD/NAD(P)-binding protein compare
Psyr_3287 -0.9 -1.8 DNA topoisomerase I compare
Psyr_1935 -0.9 -4.6 Protein of unknown function DUF796 compare
Psyr_0255 -0.9 -1.4 glutamate-cysteine ligase compare
Psyr_0464 -0.9 -1.2 hypothetical protein compare
Psyr_2095 -0.9 -4.0 Conserved TM helix compare
Psyr_3179 -0.9 -2.6 DNA translocase FtsK compare
Psyr_3674 -0.9 -2.1 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase compare
Psyr_4581 -0.9 -2.0 anthranilate synthase, component II compare
Psyr_1791 -0.9 -2.4 HAD-superfamily hydrolase, subfamily IA, variant 2 compare
Psyr_3020 -0.9 -2.3 precorrin-4 C11-methyltransferase compare
Psyr_1462 -0.9 -3.9 GCN5-related N-acetyltransferase compare
Psyr_5067 -0.9 -3.3 conserved hypothetical protein compare
Psyr_1247 -0.9 -1.7 conserved hypothetical protein compare
Psyr_3199 -0.9 -2.0 NADH dehydrogenase subunit D / NADH dehydrogenase subunit C compare
Psyr_1907 -0.9 -1.4 GTP cyclohydrolase I compare
Psyr_4141 -0.9 -3.3 ABC transporter compare
Psyr_0835 -0.9 -3.8 transcriptional regulator, TraR/DksA family compare
Psyr_2826 -0.9 -3.8 hypothetical protein compare
Psyr_3202 -0.9 -1.4 NADH dehydrogenase subunit G compare
Psyr_4361 -0.9 -2.5 penicillin-binding protein 6, Serine peptidase, MEROPS family S11 compare
Psyr_3783 -0.8 -2.3 conserved hypothetical protein compare
Psyr_5065 -0.8 -4.2 ATP-dependent DNA helicase UvrD compare
Psyr_4194 -0.8 -3.2 DnaJ central region:Heat shock protein DnaJ, N-terminal:Chaperone DnaJ, C-terminal compare
Psyr_1694 -0.8 -2.0 Rhomboid-like protein compare
Psyr_1121 -0.8 -1.4 6-phosphogluconolactonase compare
Psyr_2855 -0.8 -2.8 methionine synthase (B12-independent) compare
Psyr_4078 -0.8 -5.6 AmpG-related permease compare
Psyr_1843 -0.8 -2.3 Protein of unknown function DUF1311 compare
Psyr_0393 -0.8 -2.7 Protein of unknown function DUF971 compare
Psyr_3262 -0.8 -1.8 dnaK suppressor protein, putative compare
Psyr_3904 -0.8 -3.6 Major intrinsic protein compare
Psyr_1614 -0.8 -2.7 lipid A biosynthesis acyltransferase compare
Psyr_2488 -0.8 -2.3 hypothetical protein compare
Psyr_1783 -0.8 -2.0 CDS compare
Psyr_1530 -0.8 -2.3 hypothetical protein compare
Psyr_0076 -0.8 -2.3 Xanthine phosphoribosyltransferase compare
Psyr_3342 -0.8 -2.0 conserved hypothetical protein compare
Psyr_3459 -0.8 -1.4 Helix-turn-helix, Fis-type compare
Psyr_1780 -0.8 -1.9 transcriptional regulator, TetR family compare
Psyr_4593 -0.8 -2.8 sigma factor domain protein compare
Psyr_0531 -0.7 -1.2 LmbE-like protein compare
Psyr_2562 -0.7 -1.7 hypothetical protein compare
Psyr_2433 -0.7 -1.9 conserved hypothetical protein compare
Psyr_0276 -0.7 -2.1 zinc uptake regulation protein, putative compare
Psyr_4092 -0.7 -3.2 Glutathione S-transferase, N-terminal compare
Psyr_0060 -0.7 -2.7 Protein of unknown function DUF513 compare
Psyr_4512 -0.7 -3.6 putative phage-related protein compare
Psyr_2225 -0.7 -1.9 methenyltetrahydrofolate cyclohydrolase / 5,10-methylenetetrahydrofolate dehydrogenase (NADP+) compare
Psyr_0475 -0.7 -2.1 Protein of unknown function YGGT compare
Psyr_4788 -0.7 -1.1 lipoprotein, putative compare
Psyr_4089 -0.7 -3.2 PAS compare
Psyr_3905 -0.7 -3.9 glycerol kinase compare
Psyr_0920 -0.7 -5.9 Glycosyl transferase, group 1 compare
Psyr_0916 -0.7 -4.7 GDP-mannose 4,6-dehydratase compare
Psyr_4623 -0.7 -4.9 Aminoglycoside phosphotransferase compare
Psyr_1378 -0.7 -1.6 RecA protein compare
Psyr_4627 -0.7 -1.6 dimethyladenosine transferase compare
Psyr_2160 -0.7 -1.9 cold-shock DNA-binding protein family compare
Psyr_2897 -0.7 -3.4 regulatory protein, LuxR:Response regulator receiver compare
Psyr_3198 -0.7 -1.5 NADH dehydrogenase subunit B compare
Psyr_0832 -0.7 -4.1 Two-component sensor kinase CbrA compare
Psyr_3809 -0.7 -3.9 hypothetical protein compare
Psyr_0735 -0.7 -1.6 Peptidase S24, S26A and S26B compare
Psyr_4736 -0.7 -1.1 conserved hypothetical protein compare
Psyr_3672 -0.7 -1.8 cobalamin-5'-phosphate synthase compare
Psyr_0535 -0.7 -1.8 toluene tolerance protein, putative compare
Psyr_0736 -0.7 -1.9 umuC protein compare
Psyr_0373 -0.7 -1.3 CDS compare
Psyr_1371 -0.7 -3.3 5'-nucleotidase / exopolyphosphatase / 3'-nucleotidase compare
Psyr_0919 -0.7 -4.4 Chromosome segregation ATPase-like protein compare
Psyr_4566 -0.7 -4.2 Peptidase M23B compare
Psyr_1418 -0.7 -1.7 Radical SAM compare
Psyr_5130 -0.7 -4.0 chromosome segregation ATPase compare
Psyr_1968 -0.7 -0.9 RND efflux system, outer membrane lipoprotein, NodT compare
Psyr_0369 -0.7 -2.2 lipoprotein, putative compare
Psyr_1749 -0.7 -3.7 ATP-dependent proteinase, Serine peptidase, MEROPS family S16 compare
Psyr_0493 -0.6 -1.2 CheW-like protein compare
Psyr_1812 -0.6 -3.5 guanine deaminase compare
Psyr_0947 -0.6 -3.4 TPR repeat protein:TPR repeat protein compare
Psyr_0291 -0.6 -2.7 DedA compare
Psyr_0979 -0.6 -1.0 conserved hypothetical protein compare
Psyr_1400 -0.6 -5.3 outer membrane porin compare
Psyr_1417 -0.6 -2.9 TPR repeat protein compare
Psyr_3600 -0.6 -1.4 transcriptional regulator, LysR family compare
Psyr_0282 -0.6 -2.9 Binding-protein-dependent transport systems inner membrane component compare
Psyr_2406 -0.6 -1.5 Flavin reductase-like protein compare
Psyr_1269 -0.6 -1.9 phosphoribosylformylglycinamidine synthase compare
Psyr_5133 -0.6 -2.2 tRNA modification GTPase trmE compare
Psyr_4887 -0.6 -4.1 Peptidase S41A, C-terminal protease compare
Psyr_3637 -0.6 -4.4 Glycosyl transferase, family 4 compare
Psyr_2065 -0.6 -2.4 transcription elongation factor GreB compare
Psyr_3013 -0.6 -0.8 magnesium chelatase subunit ChlD compare
Psyr_0263 -0.6 -1.9 Two-component response regulator AlgB compare
Psyr_2422 -0.6 -2.1 transcriptional regulator, LysR family compare
Psyr_4719 -0.6 -3.8 hypothetical protein compare
Psyr_2271 -0.6 -3.4 membrane protein, putative compare
Psyr_1410 -0.6 -2.0 Holliday junction DNA helicase RuvB compare
Psyr_4750 -0.6 -1.3 cell division ATP-binding protein FtsE compare
Psyr_1707 -0.6 -2.8 transcriptional regulator, GntR family compare
Psyr_0215 -0.6 -4.1 Exodeoxyribonuclease III xth compare
Psyr_2620 -0.6 -1.2 RND efflux system, outer membrane lipoprotein, NodT compare
Psyr_4940 -0.6 -1.3 3'(2'),5'-bisphosphate nucleotidase compare
Psyr_3142 -0.6 -1.7 general secretion pathway protein N, putative compare
Psyr_4843 -0.6 -3.0 NUDIX hydrolase compare
Psyr_0927 -0.6 -2.1 hypothetical protein compare
Psyr_4264 -0.6 -3.7 ABC transporter compare
Psyr_4139 -0.6 -2.8 Mce4/Rv3499c/MTV023.06c protein compare
Psyr_1880 -0.6 -2.8 Cytochrome c, class I compare
Psyr_4404 -0.6 -1.5 tRNA-U20-dihydrouridine synthase compare
Psyr_3842 -0.6 -2.8 SNF2-related:Helicase, C-terminal:Type III restriction enzyme, res subunit compare
Psyr_2171 -0.6 -1.5 HpcH/HpaI aldolase compare
Psyr_4393 -0.6 -2.3 type II secretion system protein E compare


Specific Phenotypes

None in this experiment

For Pseudomonas syringae pv. syringae B728a in stress experiments

For stress capsaicin across organisms