Experiment set4IT019 for Pseudomonas fluorescens SBW25-INTG

Compare to:

L-Arabinose carbon source; with MOPS

200 most important genes:

  gene name fitness t score description  
PFLU_RS03645 -5.7 -11.6 tetratricopeptide repeat protein compare
PFLU_RS28645 -5.4 -16.2 phosphoenolpyruvate--protein phosphotransferase compare
PFLU_RS01645 -5.3 -13.7 S41 family peptidase compare
PFLU_RS20625 -5.3 -3.5 TetR/AcrR family transcriptional regulator compare
PFLU_RS14550 -5.2 -3.6 UTP--glucose-1-phosphate uridylyltransferase GalU compare
PFLU_RS06320 -4.9 -3.4 OmpH family outer membrane protein compare
PFLU_RS23920 -4.8 -4.0 septation protein A compare
PFLU_RS22095 -4.7 -11.5 GTP diphosphokinase compare
PFLU_RS11640 -4.5 -4.4 aldehyde dehydrogenase (NADP(+)) conserved
PFLU_RS21300 -4.5 -6.1 cysteine hydrolase compare
PFLU_RS02490 -4.5 -10.4 phosphoserine phosphatase SerB compare
PFLU_RS28695 -4.3 -7.7 phosphoglycerate dehydrogenase compare
PFLU_RS27365 -4.2 -9.4 indole-3-glycerol phosphate synthase TrpC compare
PFLU_RS20540 -4.1 -11.4 phosphoribosylanthranilate isomerase compare
PFLU_RS26545 -3.9 -12.4 sel1 repeat family protein compare
PFLU_RS01605 -3.9 -10.6 imidazoleglycerol-phosphate dehydratase HisB compare
PFLU_RS01610 -3.9 -12.8 imidazole glycerol phosphate synthase subunit HisH compare
PFLU_RS28535 -3.8 -17.0 dihydroxy-acid dehydratase compare
PFLU_RS24825 -3.8 -3.9 Fe-S cluster assembly protein IscX compare
PFLU_RS07650 -3.7 -17.2 fatty acid oxidation complex subunit alpha FadB compare
PFLU_RS04070 -3.7 -2.6 peptide chain release factor 3 compare
PFLU_RS11635 -3.6 -15.9 hypothetical protein conserved
PFLU_RS04445 -3.6 -4.3 ABC transporter substrate-binding protein compare
PFLU_RS12975 -3.6 -5.9 DUF934 domain-containing protein compare
PFLU_RS25640 -3.5 -13.8 ketol-acid reductoisomerase compare
PFLU_RS01620 -3.5 -9.8 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
PFLU_RS22740 -3.4 -5.2 phosphoadenylyl-sulfate reductase compare
PFLU_RS24125 -3.4 -7.5 cold-shock protein compare
PFLU_RS07785 -3.4 -7.8 VacJ family lipoprotein compare
PFLU_RS00180 -3.4 -8.9 tryptophan synthase subunit beta compare
PFLU_RS12980 -3.4 -10.9 nitrite/sulfite reductase compare
PFLU_RS24485 -3.3 -10.8 hypothetical protein compare
PFLU_RS22595 -3.3 -3.2 OmpA family protein compare
PFLU_RS04715 -3.3 -6.4 D-alanine--D-alanine ligase compare
PFLU_RS26770 -3.3 -12.8 DedA family protein compare
PFLU_RS25735 -3.3 -6.7 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS04465 -3.3 -9.9 ATP phosphoribosyltransferase compare
PFLU_RS04430 -3.2 -6.6 ATP-binding cassette domain-containing protein compare
PFLU_RS27370 -3.2 -13.7 anthranilate phosphoribosyltransferase compare
PFLU_RS04440 -3.2 -7.5 outer membrane lipid asymmetry maintenance protein MlaD compare
PFLU_RS11630 -3.2 -14.1 MFS transporter conserved
PFLU_RS28650 -3.2 -8.8 RNA pyrophosphohydrolase compare
PFLU_RS02365 -3.2 -13.5 glycosyltransferase compare
PFLU_RS11625 -3.2 -12.3 dihydroxy-acid dehydratase conserved
PFLU_RS03770 -3.1 -15.2 sulfate adenylyltransferase subunit CysN compare
PFLU_RS04435 -3.1 -6.2 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
PFLU_RS29095 -3.1 -19.2 polyphosphate kinase 1 compare
PFLU_RS25715 -3.1 -11.9 RNA polymerase-binding protein DksA compare
PFLU_RS20580 -3.1 -12.9 3-isopropylmalate dehydratase large subunit compare
PFLU_RS08065 -3.1 -11.4 N-acetylmuramic acid 6-phosphate phosphatase MupP compare
PFLU_RS08575 -3.1 -2.5 hypothetical protein compare
PFLU_RS25750 -3.1 -7.3 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PFLU_RS22070 -3.0 -6.0 phosphoribosylglycinamide formyltransferase compare
PFLU_RS28655 -3.0 -15.2 HAD family hydrolase compare
PFLU_RS08155 -3.0 -2.9 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
PFLU_RS18505 -3.0 -12.0 uroporphyrinogen-III C-methyltransferase compare
PFLU_RS13350 -3.0 -2.3 ParD-like family protein compare
PFLU_RS14810 -2.9 -2.8 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE compare
PFLU_RS02590 -2.9 -9.4 ATP phosphoribosyltransferase regulatory subunit compare
PFLU_RS22105 -2.9 -6.9 cysteine synthase CysM compare
PFLU_RS27440 -2.9 -8.7 nucleotidyltransferase family protein compare
PFLU_RS18585 -2.9 -1.6 high frequency lysogenization protein HflD compare
PFLU_RS14775 -2.9 -2.0 enoyl-CoA hydratase compare
PFLU_RS08160 -2.9 -9.1 sugar transferase compare
PFLU_RS31100 -2.9 -5.0 preprotein translocase subunit SecG compare
PFLU_RS04470 -2.8 -12.5 histidinol dehydrogenase compare
PFLU_RS29560 -2.8 -1.7 hypothetical protein compare
PFLU_RS09980 -2.8 -15.8 peptidase S41 compare
PFLU_RS03765 -2.8 -10.6 sulfate adenylyltransferase subunit CysD compare
PFLU_RS27305 -2.8 -7.2 anhydro-N-acetylmuramic acid kinase compare
PFLU_RS04385 -2.8 -10.5 RNase adapter RapZ compare
PFLU_RS25755 -2.8 -4.2 pantoate--beta-alanine ligase compare
PFLU_RS04015 -2.8 -2.7 1-phosphofructokinase compare
PFLU_RS24765 -2.8 -17.5 2-isopropylmalate synthase compare
PFLU_RS25730 -2.8 -17.3 PAS domain S-box protein compare
PFLU_RS13010 -2.7 -4.8 Fe-S biogenesis protein NfuA compare
PFLU_RS04325 -2.7 -16.4 ribonuclease G compare
PFLU_RS28965 -2.7 -10.4 5-formyltetrahydrofolate cyclo-ligase compare
PFLU_RS02370 -2.7 -10.6 glycosyltransferase compare
PFLU_RS03980 -2.7 -7.9 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD compare
PFLU_RS24785 -2.7 -11.8 outer membrane protein assembly factor BamB compare
PFLU_RS27620 -2.7 -15.1 acyl-CoA dehydrogenase compare
PFLU_RS01900 -2.6 -7.7 phosphoribosyl-AMP cyclohydrolase compare
PFLU_RS09055 -2.6 -5.5 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
PFLU_RS24095 -2.6 -1.8 crossover junction endodeoxyribonuclease RuvC compare
PFLU_RS28765 -2.6 -10.3 polyamine ABC transporter ATP-binding protein compare
PFLU_RS21360 -2.6 -2.0 MarR family transcriptional regulator compare
PFLU_RS04150 -2.6 -5.9 DUF1043 family protein compare
PFLU_RS18640 -2.6 -1.8 NADH-quinone oxidoreductase subunit NuoG compare
PFLU_RS12580 -2.6 -9.5 MurR/RpiR family transcriptional regulator compare
PFLU_RS30470 -2.6 -2.4 addiction module antidote protein compare
PFLU_RS17950 -2.6 -2.0 hypothetical protein compare
PFLU_RS20565 -2.6 -13.0 3-isopropylmalate dehydrogenase compare
PFLU_RS18395 -2.5 -1.7 MotA/TolQ/ExbB proton channel family protein compare
PFLU_RS02460 -2.5 -10.2 alpha/beta fold hydrolase compare
PFLU_RS03970 -2.5 -8.0 carboxylating nicotinate-nucleotide diphosphorylase compare
PFLU_RS07640 -2.5 -9.8 universal stress protein compare
PFLU_RS00175 -2.5 -9.4 tryptophan synthase subunit alpha compare
PFLU_RS08165 -2.5 -2.4 acyl carrier protein compare
PFLU_RS14050 -2.5 -1.5 hypothetical protein compare
PFLU_RS00415 -2.5 -1.7 thiol:disulfide interchange protein DsbA/DsbL compare
PFLU_RS27445 -2.4 -12.4 phosphotransferase compare
PFLU_RS04650 -2.4 -13.3 ABC transporter substrate-binding protein compare
PFLU_RS02700 -2.4 -4.7 ammonia-dependent NAD(+) synthetase compare
PFLU_RS18645 -2.4 -2.7 NADH-quinone oxidoreductase subunit NuoH compare
PFLU_RS28165 -2.4 -11.2 methylenetetrahydrofolate reductase [NAD(P)H] compare
PFLU_RS18635 -2.4 -1.6 NADH-quinone oxidoreductase subunit NuoF compare
PFLU_RS26735 -2.4 -8.8 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PFLU_RS18655 -2.4 -1.6 NADH-quinone oxidoreductase subunit J compare
PFLU_RS14820 -2.3 -6.1 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase compare
PFLU_RS19910 -2.3 -2.4 hypothetical protein compare
PFLU_RS18665 -2.3 -1.6 NADH-quinone oxidoreductase subunit L compare
PFLU_RS00870 -2.3 -1.6 hypothetical protein compare
PFLU_RS29880 -2.3 -11.2 acetyl-CoA carboxylase biotin carboxylase subunit compare
PFLU_RS18625 -2.3 -5.9 NADH-quinone oxidoreductase subunit C/D compare
PFLU_RS18670 -2.3 -1.5 NADH-quinone oxidoreductase subunit M compare
PFLU_RS01625 -2.2 -2.5 imidazole glycerol phosphate synthase subunit HisF compare
PFLU_RS29515 -2.2 -7.8 RidA family protein compare
PFLU_RS21985 -2.2 -4.8 adenosylcobinamide-GDP ribazoletransferase compare
PFLU_RS18620 -2.2 -3.3 NADH-quinone oxidoreductase subunit B compare
PFLU_RS28325 -2.2 -7.8 energy transducer TonB compare
PFLU_RS29875 -2.2 -11.1 oxaloacetate decarboxylase subunit alpha compare
PFLU_RS29550 -2.2 -8.5 ATP-dependent DNA helicase RecG compare
PFLU_RS20575 -2.2 -3.7 3-isopropylmalate dehydratase small subunit compare
PFLU_RS04930 -2.2 -9.2 PhoH family protein compare
PFLU_RS07810 -2.1 -12.4 tRNA dihydrouridine(20/20a) synthase DusA compare
PFLU_RS15410 -2.1 -2.7 zinc-dependent alcohol dehydrogenase family protein compare
PFLU_RS28760 -2.1 -10.4 ABC transporter permease subunit compare
PFLU_RS01615 -2.1 -3.9 DUF2164 domain-containing protein compare
PFLU_RS00465 -2.1 -8.7 spore maturation protein compare
PFLU_RS29750 -2.1 -5.3 phosphate signaling complex protein PhoU compare
PFLU_RS26020 -2.1 -9.6 TetR/AcrR family transcriptional regulator compare
PFLU_RS26595 -2.1 -1.4 lipoprotein compare
PFLU_RS08145 -2.1 -6.3 NAD-dependent epimerase/dehydratase family protein compare
PFLU_RS25815 -2.1 -1.5 transcription termination/antitermination protein NusA compare
PFLU_RS04220 -2.1 -7.3 FadR family transcriptional regulator compare
PFLU_RS28725 -2.1 -8.4 DUF2059 domain-containing protein compare
PFLU_RS01585 -2.0 -5.8 oxidative damage protection protein compare
PFLU_RS18615 -2.0 -2.9 NADH-quinone oxidoreductase subunit A compare
PFLU_RS26565 -2.0 -1.1 rRNA maturation RNase YbeY compare
PFLU_RS29490 -2.0 -7.5 ribonuclease PH compare
PFLU_RS28755 -2.0 -7.4 ABC transporter permease subunit compare
PFLU_RS20515 -2.0 -4.5 amidophosphoribosyltransferase compare
PFLU_RS24085 -2.0 -4.0 Holliday junction branch migration DNA helicase RuvB compare
PFLU_RS08370 -2.0 -3.3 hypothetical protein compare
PFLU_RS13035 -2.0 -3.2 cobalamin biosynthesis protein CobW compare
PFLU_RS13540 -2.0 -5.0 3-phosphoshikimate 1-carboxyvinyltransferase compare
PFLU_RS24025 -2.0 -8.8 quinolinate synthase NadA compare
PFLU_RS22190 -2.0 -1.2 hypothetical protein compare
PFLU_RS14430 -2.0 -2.6 arsenate reductase ArsC compare
PFLU_RS23310 -2.0 -8.0 arginine/ornithine succinyltransferase subunit alpha compare
PFLU_RS26640 -2.0 -11.0 septal ring lytic transglycosylase RlpA family protein compare
PFLU_RS23065 -1.9 -7.5 phosphate acyltransferase PlsX compare
PFLU_RS03610 -1.9 -6.5 redox-regulated ATPase YchF compare
PFLU_RS13950 -1.9 -2.2 hypothetical protein compare
PFLU_RS26570 -1.9 -4.5 HlyC/CorC family transporter compare
PFLU_RS25800 -1.9 -4.4 tRNA pseudouridine(55) synthase TruB compare
PFLU_RS14830 -1.9 -5.7 undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase compare
PFLU_RS25920 -1.9 -3.8 outer membrane protein assembly factor BamE compare
PFLU_RS07655 -1.9 -5.3 acetyl-CoA C-acyltransferase FadA compare
PFLU_RS13845 -1.9 -1.8 hypothetical protein compare
PFLU_RS18530 -1.9 -4.9 DNA translocase FtsK compare
PFLU_RS02180 -1.9 -1.2 thioredoxin TrxC compare
PFLU_RS01485 -1.9 -9.5 cellulase compare
PFLU_RS18675 -1.8 -1.3 NADH-quinone oxidoreductase subunit NuoN compare
PFLU_RS02000 -1.8 -13.6 penicillin-binding protein 1A compare
PFLU_RS08860 -1.8 -2.1 2-hydroxy-3-oxopropionate reductase compare
PFLU_RS01895 -1.8 -4.0 phosphoribosyl-ATP diphosphatase compare
PFLU_RS20845 -1.8 -2.3 hypothetical protein compare
PFLU_RS27475 -1.8 -5.0 symmetrical bis(5'-nucleosyl)-tetraphosphatase compare
PFLU_RS16310 -1.8 -1.7 hypothetical protein compare
PFLU_RS20690 -1.8 -2.9 hypothetical protein compare
PFLU_RS19665 -1.8 -1.5 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit compare
PFLU_RS25360 -1.8 -5.5 glutamate 5-kinase compare
PFLU_RS17410 -1.7 -6.0 diguanylate cyclase compare
PFLU_RS29885 -1.7 -6.3 LysR family transcriptional regulator compare
PFLU_RS29900 -1.7 -8.9 DNA helicase II compare
PFLU_RS06620 -1.7 -2.8 DUF2282 domain-containing protein compare
PFLU_RS30165 -1.7 -7.4 ParA family protein compare
PFLU_RS19175 -1.7 -6.4 trigger factor compare
PFLU_RS02990 -1.7 -3.8 precorrin-3B C(17)-methyltransferase compare
PFLU_RS00750 -1.7 -3.2 poly-beta-1,6-N-acetyl-D-glucosamine biosynthesis protein PgaD compare
PFLU_RS28775 -1.7 -8.3 polyamine ABC transporter substrate-binding protein compare
PFLU_RS18805 -1.7 -1.9 ABC transporter ATP-binding protein compare
PFLU_RS11380 -1.7 -1.3 sarcosine oxidase subunit delta compare
PFLU_RS23305 -1.6 -6.5 arginine N-succinyltransferase compare
PFLU_RS19165 -1.6 -4.7 ATP-dependent Clp protease ATP-binding subunit ClpX compare
PFLU_RS25225 -1.6 -6.1 disulfide bond formation protein B compare
PFLU_RS06555 -1.6 -6.5 OmpA family protein compare
PFLU_RS30030 -1.6 -1.0 membrane protein compare
PFLU_RS02455 -1.6 -2.4 3',5'-cyclic-AMP phosphodiesterase compare
PFLU_RS09495 -1.6 -2.0 helix-turn-helix transcriptional regulator compare
PFLU_RS29360 -1.6 -1.4 cytochrome c5 family protein compare
PFLU_RS08505 -1.6 -4.3 protease HtpX compare
PFLU_RS20330 -1.6 -3.2 cold-shock protein compare
PFLU_RS29735 -1.6 -7.1 HlyC/CorC family transporter compare
PFLU_RS10765 -1.6 -6.7 UvrY/SirA/GacA family response regulator transcription factor compare
PFLU_RS13120 -1.6 -1.1 hypothetical protein compare
PFLU_RS25695 -1.6 -3.8 ABC transporter substrate-binding protein compare
PFLU_RS24590 -1.6 -1.8 cytochrome c assembly protein compare


Specific Phenotypes

For 14 genes in this experiment

For carbon source L-Arabinose in Pseudomonas fluorescens SBW25-INTG

For carbon source L-Arabinose across organisms