Experiment set4IT019 for Methanococcus maripaludis S2

Compare to:

H2 deepwell casamino acid FREE

200 most important genes:

  gene name fitness t score description  
MMP_RS05500 -10.1 -5.2 2-isopropylmalate synthase compare
MMP_RS01455 -9.8 -5.4 nickel pincer cofactor biosynthesis protein LarC compare
MMP_RS03450 -8.6 -2.2 glycine synthesis protein GlyXS (from data) compare
MMP_RS04215 -8.1 -8.5 nickel pincer cofactor biosynthesis protein LarB compare
MMP_RS06895 -7.9 -2.0 selenocysteine-specific translation elongation factor compare
MMP_RS06375 -7.6 -4.8 ATP-dependent sacrificial sulfur transferase LarE compare
MMP_RS06270 -7.4 -5.2 TIGR00300 family protein compare
MMP_RS07845 -7.4 -2.6 LL-diaminopimelate aminotransferase compare
MMP_RS06400 -7.2 -1.9 4Fe-4S binding protein compare
MMP_RS04620 -7.2 -13.5 cobalt transporter CbiM compare
MMP_RS07185 -7.1 -14.0 pyridoxal phosphate-dependent aminotransferase compare
MMP_RS05930 -7.1 -2.4 3-isopropylmalate dehydratase large subunit compare
MMP_RS06730 -6.9 -2.0 phosphopantothenate/pantothenate synthetase compare
MMP_RS07600 -6.8 -2.7 Ni-sirohydrochlorin a c-diamide synthase compare
MMP_RS06120 -6.8 -2.0 UPF0147 family protein compare
MMP_RS08095 -6.7 -7.1 dethiobiotin synthase compare
MMP_RS07345 -6.7 -6.7 glycine synthesis protein GlyXL (from data) compare
MMP_RS03700 -6.7 -10.2 sodium:proton antiporter compare
MMP_RS03600 -6.6 -2.2 triose-phosphate isomerase compare
MMP_RS06285 -6.5 -2.6 precorrin-6Y C5 15-methyltransferase (decarboxylating) subunit CbiT compare
MMP_RS04500 -6.4 -17.8 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
MMP_RS05425 -6.4 -5.4 monovalent cation/H+ antiporter complex subunit F compare
MMP_RS01610 -6.3 -3.2 hypothetical protein compare
MMP_RS03035 -6.3 -3.5 4-hydroxy-tetrahydrodipicolinate synthase compare
MMP_RS03435 -6.2 -1.9 ketol-acid reductoisomerase compare
MMP_RS01020 -6.1 -0.9 3 4-dihydroxy-2-butanone-4-phosphate synthase compare
MMP_RS02195 -6.1 -4.3 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-methylthiotransferase compare
MMP_RS01175 -6.0 -4.3 triphosphoribosyl-dephospho-CoA synthase compare
MMP_RS08650 -5.9 -2.6 glutamine--fructose-6-phosphate transaminase (isomerizing) compare
MMP_RS08460 -5.9 -2.1 proteasome-activating nucleotidase compare
MMP_RS06355 -5.9 -2.6 molybdenum cofactor biosynthesis protein MoaE compare
MMP_RS07630 -5.8 -1.5 ATP-binding cassette domain-containing protein compare
MMP_RS06625 -5.8 -2.4 DNA primase compare
MMP_RS06350 -5.8 -5.7 HesA/MoeB/ThiF family protein compare
MMP_RS03315 -5.7 -1.5 ferrous iron transport protein A compare
MMP_RS00750 -5.7 -2.6 fumarate hydratase compare
MMP_RS02145 -5.7 -7.8 winged helix-turn-helix transcriptional regulator compare
MMP_RS02135 -5.7 -5.8 DUF5612 domain-containing protein compare
MMP_RS03960 -5.7 -0.8 hypothetical protein compare
MMP_RS04685 -5.7 -3.4 DUF126 domain-containing protein compare
MMP_RS04605 -5.6 -4.8 cobalt ECF transporter T component CbiQ compare
MMP_RS00110 -5.6 -3.5 hypothetical protein compare
MMP_RS01925 -5.6 -15.2 DUF1616 domain-containing protein compare
MMP_RS04615 -5.5 -3.7 PDGLE domain-containing protein compare
MMP_RS09020 -5.5 -1.9 hypothetical protein compare
MMP_RS08440 -5.5 -2.9 cell division protein SepF compare
MMP_RS01875 -5.5 -13.8 N-acetyltransferase compare
MMP_RS08105 -5.4 -6.2 6-carboxyhexanoate--CoA ligase compare
MMP_RS00305 -5.4 -1.8 phosphoribosyl-ATP diphosphatase compare
MMP_RS08715 -5.4 -2.2 formylmethanofuran dehydrogenase subunit B compare
MMP_RS01500 -5.4 -2.2 CBS domain-containing protein compare
MMP_RS01880 -5.3 -7.9 DegT/DnrJ/EryC1/StrS family aminotransferase compare
MMP_RS01005 -5.2 -1.1 riboflavin synthase compare
MMP_RS08720 -5.2 -1.5 4Fe-4S binding protein compare
MMP_RS02240 -5.1 -3.9 methanogenesis marker 7 protein compare
MMP_RS05265 -5.1 -2.6 2-isopropylmalate synthase compare
MMP_RS06370 -5.0 -5.3 biotin synthase BioB compare
MMP_RS02900 -5.0 -0.7 imidazoleglycerol-phosphate dehydratase HisB compare
MMP_RS02875 -5.0 -8.5 chorismate pyruvate-lyase family protein compare
MMP_RS01885 -5.0 -10.0 Gfo/Idh/MocA family oxidoreductase compare
MMP_RS04090 -5.0 -3.3 hypothetical protein compare
MMP_RS08635 -5.0 -1.8 UbiA family prenyltransferase compare
MMP_RS08100 -4.9 -6.6 8-amino-7-oxononanoate synthase compare
MMP_RS05515 -4.9 -7.7 cyclic pyranopterin monophosphate synthase MoaC compare
MMP_RS04775 -4.9 -4.1 adenosylhomocysteinase compare
MMP_RS03580 -4.9 -3.8 signal recognition particle-docking protein FtsY compare
MMP_RS03390 -4.9 -8.6 malate dehydrogenase compare
MMP_RS07380 -4.8 -2.2 transcription elongation factor Spt5 compare
MMP_RS06230 -4.8 -3.2 helix-turn-helix domain-containing protein compare
MMP_RS03025 -4.8 -6.8 molybdenum cofactor guanylyltransferase compare
MMP_RS07005 -4.8 -0.7 4Fe-4S binding protein compare
MMP_RS07750 -4.8 -4.9 DUF357 domain-containing protein compare
MMP_RS01325 -4.8 -2.7 dihydroneopterin aldolase family protein compare
MMP_RS06295 -4.7 -7.8 methanogenesis marker 14 protein compare
MMP_RS01380 -4.7 -6.0 PHP domain-containing protein compare
MMP_RS05550 -4.7 -0.7 cation:proton antiporter compare
MMP_RS03475 -4.7 -0.7 hypothetical protein compare
MMP_RS01385 -4.7 -0.7 imidazole glycerol phosphate synthase subunit HisH compare
MMP_RS07635 -4.7 -6.8 MogA/MoaB family molybdenum cofactor biosynthesis protein compare
MMP_RS01900 -4.7 -19.9 hypothetical protein compare
MMP_RS05920 -4.7 -0.7 50S ribosomal protein L37e compare
MMP_RS07730 -4.7 -2.1 pyruvate synthase subunit beta compare
MMP_RS05250 -4.6 -1.4 NFYB/HAP3 family transcription factor subunit compare
MMP_RS07955 -4.6 -6.2 FumA C-terminus/TtdB family hydratase beta subunit compare
MMP_RS08790 -4.5 -2.1 translation initiation factor IF-2 subunit alpha compare
MMP_RS07755 -4.5 -0.9 DUF555 domain-containing protein compare
MMP_RS07075 -4.5 -4.7 phosphomannomutase/phosphoglucomutase compare
MMP_RS02280 -4.5 -0.9 DUF211 domain-containing protein compare
MMP_RS06630 -4.4 -0.9 UPF0058 family protein compare
MMP_RS03015 -4.4 -11.3 GTP 3' 8-cyclase MoaA compare
MMP_RS01890 -4.4 -4.6 nucleotide sugar dehydrogenase compare
MMP_RS06975 -4.4 -2.2 sulfide-dependent adenosine diphosphate thiazole synthase compare
MMP_RS05845 -4.4 -2.0 tRNA-intron lyase compare
MMP_RS01700 -4.3 -0.9 dihydroxy-acid dehydratase compare
MMP_RS08300 -4.3 -1.1 metal-sulfur cluster assembly factor compare
MMP_RS04710 -4.3 -1.8 hypothetical protein compare
MMP_RS01905 -4.2 -19.6 glycosyltransferase compare
MMP_RS08745 -4.2 -6.8 CDP-2 3-bis-(O-geranylgeranyl)-sn-glycerol synthase compare
MMP_RS07645 -4.2 -6.8 aldehyde dehydrogenase family protein compare
MMP_RS04780 -4.1 -3.9 ribonuclease P compare
MMP_RS06725 -4.1 -12.2 hypothetical protein compare
MMP_RS00515 -4.1 -0.9 DUF655 domain-containing protein compare
MMP_RS01975 -4.1 -15.1 hypothetical protein compare
MMP_RS01755 -4.1 -1.2 DUF2097 domain-containing protein compare
MMP_RS04790 -4.0 -11.6 4-hydroxy-tetrahydrodipicolinate reductase compare
MMP_RS03400 -4.0 -3.5 archease compare
MMP_RS01800 -4.0 -4.7 TIGR00303 family protein compare
MMP_RS06670 -4.0 -5.6 glucose-6-phosphate isomerase compare
MMP_RS06130 -4.0 -4.1 peptidylprolyl isomerase compare
MMP_RS04890 -4.0 -0.8 adenylyltransferase/cytidyltransferase family protein compare
MMP_RS01225 -4.0 -5.8 DUF5379 domain-containing protein compare
MMP_RS06340 -4.0 -6.4 phosphoadenosine phosphosulfate reductase family protein compare
MMP_RS08820 -3.9 -5.0 hypothetical protein compare
MMP_RS08435 -3.8 -2.5 Era-like GTP-binding protein compare
MMP_RS05345 -3.8 -9.6 hypothetical protein compare
MMP_RS07390 -3.7 -2.6 cell division protein FtsZ compare
MMP_RS03445 -3.7 -1.1 methanogenesis marker 17 protein compare
MMP_RS08370 -3.7 -0.8 cation:proton antiporter subunit C compare
MMP_RS00300 -3.6 -0.8 6 7-dimethyl-8-ribityllumazine synthase compare
MMP_RS07735 -3.6 -0.8 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha compare
MMP_RS00895 -3.6 -4.3 hypothetical protein compare
MMP_RS07575 -3.6 -3.8 RNA ligase partner protein compare
MMP_RS05555 -3.6 -1.3 DUF4040 domain-containing protein compare
MMP_RS07580 -3.6 -3.4 DUF356 domain-containing protein compare
MMP_RS08330 -3.6 -4.5 NADH-quinone oxidoreductase subunit H compare
MMP_RS00685 -3.5 -5.4 2-phospho-L-lactate guanylyltransferase compare
MMP_RS07195 -3.5 -10.8 M20 family metallo-hydrolase compare
MMP_RS06475 -3.4 -5.4 FAD-dependent oxidoreductase compare
MMP_RS01970 -3.4 -14.0 TIGR04279 domain-containing protein compare
MMP_RS01220 -3.4 -7.2 hypothetical protein compare
MMP_RS06105 -3.4 -10.6 hydrogenase maturation peptidase HycI compare
MMP_RS01830 -3.4 -1.9 tRNA-Val compare
MMP_RS01725 -3.4 -5.5 class I SAM-dependent methyltransferase family protein compare
MMP_RS00695 -3.3 -1.0 biotin--[acetyl-CoA-carboxylase] ligase compare
MMP_RS05640 -3.3 -7.9 UTP--glucose-1-phosphate uridylyltransferase GalU compare
MMP_RS06020 -3.3 -4.5 archaeoflavoprotein AfpA compare
MMP_RS05815 -3.3 -2.2 NOL1/NOP2/sun family putative RNA methylase compare
MMP_RS07200 -3.3 -7.3 [5-(aminomethyl)furan-3-yl]methyl phosphate kinase compare
MMP_RS02355 -3.3 -3.0 30S ribosomal protein S27ae compare
MMP_RS08210 -3.2 -1.9 phosphatidylglycerophosphatase A compare
MMP_RS01545 -3.2 -1.2 CBS domain-containing protein compare
MMP_RS01955 -3.2 -3.2 hypothetical protein compare
MMP_RS02345 -3.2 -3.7 GTP-dependent dephospho-CoA kinase family protein compare
MMP_RS00810 -3.2 -6.7 topoisomerase DNA-binding C4 zinc finger domain-containing protein compare
MMP_RS04585 -3.1 -10.9 AIR synthase related protein compare
MMP_RS07710 -3.0 -8.5 cell division protein FtsZ compare
MMP_RS04720 -3.0 -3.3 DedA family protein compare
MMP_RS01795 -3.0 -1.7 methanogenesis marker 6 protein compare
MMP_RS03140 -2.9 -10.3 hypothetical protein compare
MMP_RS03640 -2.9 -3.3 archaeal proteasome endopeptidase complex subunit beta compare
MMP_RS05925 -2.9 -4.8 small nuclear ribonucleoprotein compare
MMP_RS07605 -2.9 -2.8 diadenylate cyclase compare
MMP_RS08165 -2.9 -2.8 phosphoglycerate dehydrogenase compare
MMP_RS01915 -2.9 -14.8 DUF354 domain-containing protein compare
MMP_RS08350 -2.8 -1.1 hypothetical protein compare
MMP_RS01265 -2.7 -1.7 hypothetical protein compare
MMP_RS01910 -2.7 -10.1 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
MMP_RS06885 -2.7 -2.4 50S ribosome-binding GTPase compare
MMP_RS07420 -2.7 -2.8 metalloregulator ArsR/SmtB family transcription factor compare
MMP_RS03095 -2.7 -6.1 diphthine synthase compare
MMP_RS02800 -2.7 -5.0 nucleotidyltransferase domain-containing protein compare
MMP_RS08445 -2.7 -4.5 DUF2099 family protein compare
MMP_RS01895 -2.5 -12.8 flippase compare
MMP_RS03250 -2.5 -4.2 MJ1244 family protein compare
MMP_RS02010 -2.5 -7.6 PHP domain-containing protein compare
MMP_RS06940 -2.4 -3.0 polyprenyl diphosphate synthase compare
MMP_RS08840 -2.4 -10.6 class I SAM-dependent methyltransferase compare
MMP_RS05950 -2.4 -11.6 nickel-dependent hydrogenase large subunit compare
MMP_RS07090 -2.4 -8.1 tRNA (adenine-N1)-methyltransferase compare
MMP_RS03145 -2.4 -6.3 fibrillarin-like rRNA/tRNA 2'-O-methyltransferase compare
MMP_RS04785 -2.3 -10.2 hypothetical protein compare
MMP_RS06310 -2.3 -4.6 NAD(P)/FAD-dependent oxidoreductase compare
MMP_RS07620 -2.3 -3.3 energy-coupling factor ABC transporter substrate-binding protein compare
MMP_RS06215 -2.2 -3.0 30S ribosomal protein S6e compare
MMP_RS08320 -2.2 -4.5 molybdopterin molybdotransferase MoeA compare
MMP_RS05430 -2.2 -3.3 TIGR00288 family NYN domain-containing protein compare
MMP_RS02190 -2.2 -3.6 sulfopyruvate decarboxylase subunit alpha compare
MMP_RS07540 -2.2 -5.2 CBS domain-containing protein compare
MMP_RS01840 -2.2 -6.0 TIGR00289 family protein compare
MMP_RS05540 -2.2 -2.2 hypothetical protein compare
MMP_RS08360 -2.2 -5.2 hypothetical protein compare
MMP_RS00985 -2.1 -4.2 CDC48 family AAA ATPase compare
MMP_RS08345 -2.1 -10.8 4Fe-4S binding protein compare
MMP_RS08355 -2.1 -6.0 Na(+)/H(+) antiporter subunit B compare
MMP_RS01920 -2.1 -13.3 glycosyltransferase family 2 protein compare
MMP_RS07820 -2.1 -4.5 UPF0104 family protein compare
MMP_RS01665 -2.1 -3.3 DUF2111 domain-containing protein compare
MMP_RS00115 -2.1 -8.9 radical SAM protein compare
MMP_RS05460 -2.0 -10.1 YcaO-related McrA-glycine thioamidation protein compare
MMP_RS06855 -2.0 -6.6 hypothetical protein compare
MMP_RS03110 -2.0 -4.5 glycosyltransferase family 2 protein compare
MMP_RS06980 -2.0 -6.5 tRNA 2-thiocytidine biosynthesis TtcA family protein compare
MMP_RS08725 -2.0 -2.0 Ni/Fe hydrogenase subunit alpha compare
MMP_RS07875 -2.0 -5.1 hypothetical protein compare
MMP_RS08645 -1.9 -6.1 UPF0179 family protein compare
MMP_RS07705 -1.9 -9.2 transcriptional regulator compare
MMP_RS00720 -1.9 -7.1 metal-dependent hydrolase compare
MMP_RS01960 -1.9 -0.6 hypothetical protein compare
MMP_RS08365 -1.9 -4.7 energy conserving hydrogenase EhbF compare
MMP_RS06865 -1.9 -1.3 HypC/HybG/HupF family hydrogenase formation chaperone compare


Specific Phenotypes

None in this experiment

For Methanococcus maripaludis S2 in nutrient t2 experiments

For nutrient t2 Sodium acetate across organisms