Experiment set4IT019 for Methanococcus maripaludis JJ

Compare to:

H2 N-free with 10mM D-glucosamine

200 most important genes:

  gene name fitness t score description  
MMJJ_RS02035 -6.5 -4.5 4-hydroxy-tetrahydrodipicolinate synthase compare
MMJJ_RS05450 -5.9 -15.3 TIGR03576 family pyridoxal phosphate-dependent enzyme compare
MMJJ_RS01810 -5.2 -2.1 methyl coenzyme M reductase system, component A2 compare
MMJJ_RS04485 -5.2 -8.6 riboflavin synthase compare
MMJJ_RS00580 -5.1 -2.0 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase subunit CofG compare
MMJJ_RS06875 -5.0 -2.6 hypothetical protein compare
MMJJ_RS00570 -5.0 -2.0 ribonuclease P compare
MMJJ_RS07430 -4.8 -2.9 ribonuclease VapC compare
MMJJ_RS00600 -4.7 -2.7 hydroxymethylbilane synthase compare
MMJJ_RS06240 -4.7 -2.7 dihydropteroate synthase-like protein compare
MMJJ_RS02090 -4.6 -4.5 tyramine--L-glutamate ligase compare
MMJJ_RS07950 -4.5 -2.8 4Fe-4S binding protein compare
MMJJ_RS06695 -4.5 -2.8 amidohydrolase compare
MMJJ_RS09375 -4.5 -1.8 hypothetical protein compare
MMJJ_RS03615 -4.5 -2.8 cobalt-precorrin-8 methylmutase compare
MMJJ_RS00275 -4.5 -2.3 coenzyme F420-0:L-glutamate ligase compare
MMJJ_RS06625 -4.4 -2.1 pyruvate synthase subunit PorB compare
MMJJ_RS04200 -4.3 -6.6 triphosphoribosyl-dephospho-CoA synthase compare
MMJJ_RS06510 -4.3 -2.4 LL-diaminopimelate aminotransferase compare
MMJJ_RS05445 -4.2 -2.0 2-oxoacid:acceptor oxidoreductase subunit alpha compare
MMJJ_RS05260 -4.2 -5.8 ATP-grasp domain-containing protein compare
MMJJ_RS03580 -4.2 -2.8 TIGR00303 family protein compare
MMJJ_RS06390 -4.2 -1.9 NADPH-dependent F420 reductase compare
MMJJ_RS07405 -4.1 -4.5 histone family protein compare
MMJJ_RS00210 -4.0 -2.1 DUF530 family protein compare
MMJJ_RS08625 -4.0 -2.8 magnesium/cobalt transporter CorA compare
MMJJ_RS03760 -4.0 -3.7 hydrogenase maturation nickel metallochaperone HypA compare
MMJJ_RS01935 -4.0 -4.7 O-phosphoseryl-tRNA(Sec) selenium transferase compare
MMJJ_RS01600 -4.0 -2.4 radical SAM protein compare
MMJJ_RS05575 -3.9 -4.4 2-amino-5-formylamino-6-ribosylaminopyrimidin- 4(3H)-one 5'-monophosphate deformylase compare
MMJJ_RS03270 -3.9 -2.4 ribosome biogenesis/translation initiation ATPase RLI compare
MMJJ_RS05065 -3.9 -4.6 (4-{4-[2-(gamma-L- glutamylamino)ethyl]phenoxymethyl}furan-2-yl)methanamine synthase compare
MMJJ_RS07245 -3.9 -3.8 amidohydrolase family protein compare
MMJJ_RS05650 -3.9 -2.6 formylmethanofuran dehydrogenase subunit B compare
MMJJ_RS07470 -3.9 -1.8 50S ribosome-binding GTPase compare
MMJJ_RS07410 -3.8 -4.3 methanogenesis marker protein Mmp4/MtxX compare
MMJJ_RS07785 -3.8 -2.4 fumarate reductase subunit A compare
MMJJ_RS04800 -3.8 -6.3 2-phospho-L-lactate guanylyltransferase compare
MMJJ_RS05070 -3.8 -2.0 DNA primase catalytic subunit PriS compare
MMJJ_RS08035 -3.8 -7.0 cobalt-precorrin-7 (C(5))-methyltransferase compare
MMJJ_RS00205 -3.8 -4.5 adenosylcobinamide-phosphate synthase CbiB compare
MMJJ_RS08660 -3.8 -2.6 acetylornithine transaminase compare
MMJJ_RS03125 -3.7 -3.6 GMC oxidoreductase compare
MMJJ_RS04970 -3.7 -1.7 DUF655 domain-containing protein compare
MMJJ_RS07000 -3.7 -1.7 TrkH family potassium uptake protein compare
MMJJ_RS05950 -3.7 -2.5 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase compare
MMJJ_RS03230 -3.7 -4.3 NAD(P)/FAD-dependent oxidoreductase compare
MMJJ_RS06225 -3.7 -1.9 adenosylmethionine decarboxylase compare
MMJJ_RS03995 -3.7 -7.4 PHP domain-containing protein compare
MMJJ_RS00450 -3.7 -1.7 DUF126 domain-containing protein compare
MMJJ_RS00215 -3.7 -2.1 CCA tRNA nucleotidyltransferase compare
MMJJ_RS04050 -3.6 -2.0 dihydroneopterin aldolase family protein compare
MMJJ_RS01350 -3.6 -5.0 sodium:proton antiporter compare
MMJJ_RS02045 -3.6 -3.4 molybdenum cofactor guanylyltransferase compare
MMJJ_RS05930 -3.6 -1.9 cell division protein SepF compare
MMJJ_RS09175 -3.6 -1.2 anthranilate synthase component I compare
MMJJ_RS02920 -3.6 -2.3 30S ribosomal protein S27ae compare
MMJJ_RS06180 -3.6 -2.4 tryptophan--tRNA ligase compare
MMJJ_RS07945 -3.6 -3.0 4Fe-4S binding protein compare
MMJJ_RS08535 -3.6 -3.9 NOL1/NOP2/sun family putative RNA methylase compare
MMJJ_RS03170 -3.5 -10.1 DUF5612 domain-containing protein compare
MMJJ_RS06255 -3.5 -5.4 tRNA uridine(34) 5-carboxymethylaminomethyl modification radical SAM/GNAT enzyme Elp3 compare
MMJJ_RS04155 -3.5 -7.1 hypothetical protein compare
MMJJ_RS04520 -3.5 -6.3 coenzyme F430 synthase compare
MMJJ_RS07725 -3.5 -5.7 DNA primase DnaG compare
MMJJ_RS04475 -3.4 -4.1 3,4-dihydroxy-2-butanone-4-phosphate synthase compare
MMJJ_RS06040 -3.4 -3.8 NADH-quinone oxidoreductase subunit H compare
MMJJ_RS03150 -3.4 -5.7 2-phospho-L-lactate transferase compare
MMJJ_RS08870 -3.4 -1.1 2-isopropylmalate synthase compare
MMJJ_RS03200 -3.4 -1.8 uroporphyrinogen-III synthase compare
MMJJ_RS06490 -3.4 -2.9 methanogenesis marker 2 protein compare
MMJJ_RS01750 -3.4 -2.6 ferrous iron transport protein A compare
MMJJ_RS03840 -3.4 -3.3 DHH family phosphoesterase compare
MMJJ_RS06840 -3.4 -3.3 nickel-dependent hydrogenase large subunit compare
MMJJ_RS05490 -3.4 -2.2 imidazole glycerol phosphate synthase subunit HisF compare
MMJJ_RS08850 -3.4 -1.9 succinate dehydrogenase/fumarate reductase iron-sulfur subunit compare
MMJJ_RS06155 -3.3 -5.9 phosphatidylglycerophosphatase A compare
MMJJ_RS05935 -3.3 -2.6 Era-like GTP-binding protein compare
MMJJ_RS04975 -3.3 -1.7 glycosyltransferase family 4 protein compare
MMJJ_RS06750 -3.3 -2.4 homoaconitase large subunit compare
MMJJ_RS06175 -3.3 -2.3 DUF1743 domain-containing protein compare
MMJJ_RS00355 -3.3 -2.8 ribonuclease P protein component 4 compare
MMJJ_RS05225 -3.3 -1.0 Gar1/Naf1 family protein compare
MMJJ_RS05115 -3.3 -6.6 P-II family nitrogen regulator compare
MMJJ_RS05720 -3.3 -2.0 glutamine--fructose-6-phosphate transaminase (isomerizing) compare
MMJJ_RS03190 -3.3 -2.2 phosphopyruvate hydratase compare
MMJJ_RS09130 -3.3 -1.5 NFYB/HAP3 family transcription factor subunit compare
MMJJ_RS07350 -3.3 -2.9 4Fe-4S binding protein compare
MMJJ_RS04675 -3.2 -6.1 thiamine pyrophosphate-binding protein compare
MMJJ_RS00370 -3.2 -1.5 asparagine synthase (glutamine-hydrolyzing) compare
MMJJ_RS03785 -3.2 -2.0 hypothetical protein compare
MMJJ_RS04145 -3.2 -9.5 glutamate-1-semialdehyde 2,1-aminomutase compare
MMJJ_RS03160 -3.2 -6.9 winged helix-turn-helix transcriptional regulator compare
MMJJ_RS01865 -3.2 -5.8 peptidyl-tRNA hydrolase Pth2 compare
MMJJ_RS08095 -3.1 -4.3 cobyric acid synthase CobQ compare
MMJJ_RS03005 -3.1 -3.7 Ni-sirohydrochlorin a,c-diamide reductive cyclase catalytic subunit compare
MMJJ_RS06220 -3.1 -5.9 polyamine aminopropyltransferase compare
MMJJ_RS05590 -3.1 -2.0 homoserine dehydrogenase compare
MMJJ_RS07155 -3.1 -11.2 [5-(aminomethyl)furan-3-yl]methyl phosphate kinase compare
MMJJ_RS08340 -3.1 -6.1 archaeoflavoprotein AfpA compare
MMJJ_RS00235 -3.1 -11.8 hypothetical protein compare
MMJJ_RS05995 -3.1 -2.1 ATP-binding cassette domain-containing protein compare
MMJJ_RS08615 -3.1 -10.4 oligosaccharide repeat unit polymerase family protein compare
MMJJ_RS05330 -3.1 -1.9 DNA polymerase II large subunit compare
MMJJ_RS05810 -3.0 -6.4 precorrin-4 C(11)-methyltransferase compare
MMJJ_RS08330 -3.0 -3.3 SufD family Fe-S cluster assembly protein compare
MMJJ_RS08020 -3.0 -9.4 nucleotidyltransferase domain-containing protein compare
MMJJ_RS00125 -3.0 -1.9 KEOPS complex subunit Cgi121 compare
MMJJ_RS07190 -3.0 -4.0 RtcB family protein compare
MMJJ_RS06485 -3.0 -3.1 phosphoglycerate kinase compare
MMJJ_RS09135 -3.0 -9.4 archaeosine biosynthesis radical SAM protein RaSEA compare
MMJJ_RS00425 -3.0 -3.5 hypothetical protein compare
MMJJ_RS07170 -3.0 -2.0 pyridoxal phosphate-dependent aminotransferase compare
MMJJ_RS06760 -3.0 -4.9 Ni-sirohydrochlorin a,c-diamide synthase compare
MMJJ_RS03820 -3.0 -4.2 hydrogenase formation protein HypD compare
MMJJ_RS03110 -2.9 -4.0 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))- methylthiotransferase compare
MMJJ_RS00695 -2.9 -12.4 P-II family nitrogen regulator compare
MMJJ_RS03055 -2.9 -2.5 hypothetical protein compare
MMJJ_RS06215 -2.9 -4.6 agmatinase compare
MMJJ_RS05295 -2.9 -12.2 cobyrinic acid a,c-diamide synthase compare
MMJJ_RS03810 -2.9 -3.4 AIR synthase-related protein compare
MMJJ_RS03490 -2.9 -2.4 ribonuclease VapC compare
MMJJ_RS01475 -2.9 -2.0 signal recognition particle-docking protein FtsY compare
MMJJ_RS00675 -2.8 -14.4 nitrogenase compare
MMJJ_RS04930 -2.8 -13.0 MFS transporter compare
MMJJ_RS04790 -2.8 -4.4 biotin--[acetyl-CoA-carboxylase] ligase compare
MMJJ_RS06785 -2.8 -6.8 RNA ligase partner protein compare
MMJJ_RS01880 -2.8 -2.8 RlmE family RNA methyltransferase compare
MMJJ_RS03060 -2.8 -2.9 methanogenesis marker 7 protein compare
MMJJ_RS05110 -2.8 -17.4 ammonium transporter compare
MMJJ_RS07370 -2.8 -5.5 tRNA 4-thiouridine(8) synthase ThiI compare
MMJJ_RS01360 -2.7 -2.0 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
MMJJ_RS06110 -2.7 -2.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC compare
MMJJ_RS01870 -2.7 -1.9 methanogenesis marker 15 protein compare
MMJJ_RS03225 -2.7 -2.9 4Fe-4S binding protein compare
MMJJ_RS07720 -2.7 -2.1 UPF0058 family protein compare
MMJJ_RS04110 -2.7 -6.5 hypothetical protein compare
MMJJ_RS05380 -2.7 -1.2 hypothetical protein compare
MMJJ_RS05535 -2.6 -12.1 hypothetical protein compare
MMJJ_RS07875 -2.6 -1.5 FAD-dependent oxidoreductase compare
MMJJ_RS01690 -2.6 -3.0 methanogenesis marker 12 protein compare
MMJJ_RS01415 -2.6 -2.3 beta-CASP ribonuclease aCPSF1 compare
MMJJ_RS00685 -2.6 -9.2 nitrogenase molybdenum-iron protein subunit beta compare
MMJJ_RS03295 -2.6 -12.8 PHP domain-containing protein compare
MMJJ_RS04655 -2.6 -4.8 FAD-dependent oxidoreductase compare
MMJJ_RS00475 -2.6 -2.3 bifunctional ornithine acetyltransferase/N-acetylglutamate synthase compare
MMJJ_RS00690 -2.6 -14.5 nitrogenase subunit alpha compare
MMJJ_RS08010 -2.6 -6.7 phosphoadenosine phosphosulfate reductase family protein compare
MMJJ_RS01355 -2.6 -3.0 UDP-N-acetyl-D-mannosamine dehydrogenase compare
MMJJ_RS08080 -2.5 -4.0 TIGR00300 family protein compare
MMJJ_RS01200 -2.5 -2.4 PRC-barrel domain-containing protein compare
MMJJ_RS00345 -2.5 -8.7 4-hydroxy-tetrahydrodipicolinate reductase compare
MMJJ_RS05870 -2.5 -5.7 pyridoxal 5'-phosphate synthase glutaminase subunit PdxT compare
MMJJ_RS03650 -2.5 -7.1 class I SAM-dependent methyltransferase family protein compare
MMJJ_RS05415 -2.5 -1.3 hypothetical protein compare
MMJJ_RS06805 -2.5 -2.5 monovalent cation/H+ antiporter subunit E compare
MMJJ_RS08155 -2.5 -3.7 cobalt-precorrin-5B (C(1))-methyltransferase CbiD compare
MMJJ_RS07715 -2.4 -3.0 UbiD family decarboxylase compare
MMJJ_RS07680 -2.4 -11.5 glucose-6-phosphate isomerase compare
MMJJ_RS06835 -2.4 -11.6 4Fe-4S binding protein compare
MMJJ_RS07360 -2.4 -1.4 TIGR00269 family protein compare
MMJJ_RS04980 -2.4 -4.7 bifunctional precorrin-2 dehydrogenase/sirohydrochlorin ferrochelatase compare
MMJJ_RS04670 -2.4 -3.9 DUF2117 domain-containing protein compare
MMJJ_RS09190 -2.4 -1.8 tryptophan synthase subunit beta compare
MMJJ_RS00680 -2.3 -9.0 nitrogenase iron-molybdenum cofactor biosynthesis protein NifE compare
MMJJ_RS06210 -2.3 -7.8 hypothetical protein compare
MMJJ_RS08320 -2.3 -2.0 CDP-diacylglycerol--serine O-phosphatidyltransferase compare
MMJJ_RS04985 -2.3 -3.8 glutamyl-tRNA reductase compare
MMJJ_RS05655 -2.3 -5.9 HisA/HisF family protein compare
MMJJ_RS03095 -2.3 -2.0 bifunctional N(6)-L-threonylcarbamoyladenine synthase/serine/threonine protein kinase compare
MMJJ_RS05420 -2.3 -2.9 DNA-directed DNA polymerase II small subunit compare
MMJJ_RS00700 -2.3 -8.6 P-II family nitrogen regulator compare
MMJJ_RS00705 -2.3 -9.4 nitrogenase iron protein compare
MMJJ_RS03660 -2.2 -3.3 DUF447 family protein compare
MMJJ_RS00645 -2.2 -9.2 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
MMJJ_RS00180 -2.2 -8.7 DNA topoisomerase I compare
MMJJ_RS07375 -2.2 -7.8 tRNA 2-thiocytidine biosynthesis TtcA family protein compare
MMJJ_RS07980 -2.2 -6.9 biotin synthase BioB compare
MMJJ_RS07265 -2.2 -8.0 tRNA (adenine-N1)-methyltransferase compare
MMJJ_RS04565 -2.2 -3.4 sirohydrochlorin nickelochelatase compare
MMJJ_RS04760 -2.2 -12.5 5,10-methenyltetrahydromethanopterin hydrogenase cofactor biosynthesis protein HmdC compare
MMJJ_RS04685 -2.2 -3.9 carbamoyltransferase HypF compare
MMJJ_RS03845 -2.2 -4.9 translation initiation factor IF-2 compare
MMJJ_RS04730 -2.2 -2.2 tyrosine decarboxylase MfnA compare
MMJJ_RS01755 -2.1 -2.0 ferrous iron transport protein B compare
MMJJ_RS06250 -2.1 -2.3 nicotinamide-nucleotide adenylyltransferase compare
MMJJ_RS04595 -2.1 -3.1 hypothetical protein compare
MMJJ_RS06200 -2.1 -2.3 phosphoglycerate dehydrogenase compare
MMJJ_RS05540 -2.1 -10.0 LysR family transcriptional regulator compare
MMJJ_RS04755 -2.1 -10.5 5,10-methenyltetrahydromethanopterin hydrogenase cofactor biosynthesis protein HmdB compare
MMJJ_RS03895 -2.1 -1.7 hydrogenase expression/formation protein HypE compare
MMJJ_RS07280 -2.1 -6.8 phosphomannomutase/phosphoglucomutase compare
MMJJ_RS06910 -2.1 -2.8 energy-converting NiFe hydrogenase A subunit EhaA compare
MMJJ_RS03155 -2.1 -3.3 hypothetical protein compare
MMJJ_RS04575 -2.1 -8.5 DUF116 domain-containing protein compare
MMJJ_RS03865 -2.1 -1.4 phosphoribosyl-AMP cyclohydrolase compare
MMJJ_RS07015 -2.1 -1.4 PFL family protein compare
MMJJ_RS06905 -2.1 -1.9 hypothetical protein compare
MMJJ_RS08925 -2.1 -9.2 winged helix-turn-helix transcriptional regulator compare
MMJJ_RS07955 -2.0 -8.7 ThiF family adenylyltransferase compare


Specific Phenotypes

For 14 genes in this experiment

For nitrogen source D-glucosamine in Methanococcus maripaludis JJ

For nitrogen source D-glucosamine across organisms