Experiment set4IT018 for Azospirillum brasilense Sp245

outer cut, LB soft agar motility assay

Group: motility
Media: LB + Agar (3 g/L)
Culturing: AzoBra_ML2a, Agar plate, Aerobic, at 30 (C), shaken=0 rpm, (Solid)
By: Mark on 5/20/2015
Media components: 10 g/L Tryptone, 5 g/L Yeast Extract, 5 g/L Sodium Chloride

Specific Phenotypes

For 30 genes in this experiment

For motility Agar in Azospirillum brasilense Sp245

For motility Agar across organisms

SEED Subsystems

Subsystem	#Specific
Flagellum	8
Flagellar motility	6
Bacterial hemoglobins	3
Bacterial Chemotaxis	2
Lacto-N-Biose I and Galacto-N-Biose Metabolic Pathway	1
Lactose and Galactose Uptake and Utilization	1
N-linked Glycosylation in Bacteria	1
Rhamnose containing glycans	1
Ton and Tol transport systems	1
linker unit-arabinogalactan synthesis	1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

• Galactose metabolism
• Oxidative phosphorylation
• Photosynthesis
• Purine metabolism
• Nucleotide sugars metabolism
• Lipopolysaccharide biosynthesis
• Folate biosynthesis

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway	#Steps	#Present	#Specific
UDP-α-D-galactose biosynthesis	1	1	1
UDP-N-acetyl-D-galactosamine biosynthesis I	1	1	1
UDP-α-D-galactofuranose biosynthesis	2	2	1
D-galactose detoxification	3	1	1
D-galactose degradation I (Leloir pathway)	5	3	1
superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis	6	5	1
UDP-N-acetyl-D-galactosamine biosynthesis II	7	5	1
stachyose degradation	7	4	1
UDP-sugars interconversion	9	4	1
teichuronic acid biosynthesis (B. subtilis 168)	9	2	1
colanic acid building blocks biosynthesis	11	11	1
mycolyl-arabinogalactan-peptidoglycan complex biosynthesis	18	2	1
superpathway of mycolyl-arabinogalactan-peptidoglycan complex biosynthesis	33	13	1