Experiment set4IT018 for Pseudomonas fluorescens SBW25-INTG

Compare to:

Trisodium citrate dihydrate carbon source; with MOPS

200 most important genes:

  gene name fitness t score description  
PFLU_RS02490 -4.5 -11.7 phosphoserine phosphatase SerB compare
PFLU_RS28695 -4.4 -7.8 phosphoglycerate dehydrogenase compare
PFLU_RS12975 -4.3 -5.0 DUF934 domain-containing protein compare
PFLU_RS01620 -4.2 -8.0 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
PFLU_RS28535 -4.1 -16.3 dihydroxy-acid dehydratase compare
PFLU_RS03645 -3.9 -17.8 tetratricopeptide repeat protein compare
PFLU_RS01900 -3.9 -8.3 phosphoribosyl-AMP cyclohydrolase compare
PFLU_RS01605 -3.9 -10.8 imidazoleglycerol-phosphate dehydratase HisB compare
PFLU_RS01610 -3.7 -12.9 imidazole glycerol phosphate synthase subunit HisH compare
PFLU_RS01645 -3.7 -18.1 S41 family peptidase compare
PFLU_RS27365 -3.7 -11.0 indole-3-glycerol phosphate synthase TrpC compare
PFLU_RS04465 -3.7 -10.5 ATP phosphoribosyltransferase compare
PFLU_RS24125 -3.7 -7.4 cold-shock protein compare
PFLU_RS25640 -3.7 -12.7 ketol-acid reductoisomerase compare
PFLU_RS28165 -3.6 -12.5 methylenetetrahydrofolate reductase [NAD(P)H] compare
PFLU_RS18505 -3.6 -11.6 uroporphyrinogen-III C-methyltransferase compare
PFLU_RS23065 -3.6 -11.1 phosphate acyltransferase PlsX compare
PFLU_RS20540 -3.6 -13.2 phosphoribosylanthranilate isomerase compare
PFLU_RS20580 -3.5 -15.1 3-isopropylmalate dehydratase large subunit compare
PFLU_RS27370 -3.5 -13.8 anthranilate phosphoribosyltransferase compare
PFLU_RS28655 -3.4 -15.3 HAD family hydrolase compare
PFLU_RS20575 -3.4 -7.5 3-isopropylmalate dehydratase small subunit compare
PFLU_RS12980 -3.4 -11.1 nitrite/sulfite reductase compare
PFLU_RS28385 -3.4 -15.0 homoserine O-acetyltransferase compare
PFLU_RS23070 -3.3 -2.0 50S ribosomal protein L32 compare
PFLU_RS25755 -3.3 -3.9 pantoate--beta-alanine ligase compare
PFLU_RS22595 -3.3 -4.4 OmpA family protein compare
PFLU_RS04470 -3.3 -13.7 histidinol dehydrogenase compare
PFLU_RS24765 -3.3 -21.3 2-isopropylmalate synthase compare
PFLU_RS28965 -3.2 -12.2 5-formyltetrahydrofolate cyclo-ligase compare
PFLU_RS09055 -3.2 -2.2 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
PFLU_RS01895 -3.2 -8.0 phosphoribosyl-ATP diphosphatase compare
PFLU_RS20510 -3.2 -15.2 O-succinylhomoserine sulfhydrylase compare
PFLU_RS25735 -3.2 -8.1 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS20690 -3.1 -6.6 hypothetical protein compare
PFLU_RS20565 -3.1 -15.7 3-isopropylmalate dehydrogenase compare
PFLU_RS28390 -3.1 -12.7 methionine biosynthesis protein MetW compare
PFLU_RS00180 -3.1 -9.0 tryptophan synthase subunit beta compare
PFLU_RS06320 -3.0 -5.0 OmpH family outer membrane protein compare
PFLU_RS22740 -3.0 -6.5 phosphoadenylyl-sulfate reductase compare
PFLU_RS04070 -3.0 -6.5 peptide chain release factor 3 compare
PFLU_RS00175 -2.9 -9.4 tryptophan synthase subunit alpha compare
PFLU_RS22105 -2.9 -6.7 cysteine synthase CysM compare
PFLU_RS01625 -2.9 -3.4 imidazole glycerol phosphate synthase subunit HisF compare
PFLU_RS02590 -2.9 -9.5 ATP phosphoribosyltransferase regulatory subunit compare
PFLU_RS08505 -2.8 -9.0 protease HtpX compare
PFLU_RS22095 -2.8 -18.8 GTP diphosphokinase compare
PFLU_RS06055 -2.7 -1.8 chemotaxis response regulator protein-glutamate methylesterase compare
PFLU_RS29515 -2.7 -11.7 RidA family protein compare
PFLU_RS26545 -2.7 -11.8 sel1 repeat family protein compare
PFLU_RS21300 -2.6 -6.9 cysteine hydrolase compare
PFLU_RS23305 -2.6 -11.8 arginine N-succinyltransferase compare
PFLU_RS23310 -2.6 -10.6 arginine/ornithine succinyltransferase subunit alpha compare
PFLU_RS21495 -2.5 -4.1 TlpA family protein disulfide reductase compare
PFLU_RS20515 -2.5 -4.2 amidophosphoribosyltransferase compare
PFLU_RS29360 -2.5 -2.6 cytochrome c5 family protein compare
PFLU_RS03770 -2.4 -12.8 sulfate adenylyltransferase subunit CysN compare
PFLU_RS18640 -2.4 -3.2 NADH-quinone oxidoreductase subunit NuoG compare
PFLU_RS08160 -2.4 -9.0 sugar transferase compare
PFLU_RS22070 -2.3 -4.5 phosphoribosylglycinamide formyltransferase compare
PFLU_RS19165 -2.3 -5.4 ATP-dependent Clp protease ATP-binding subunit ClpX compare
PFLU_RS02790 -2.3 -2.4 TetR family transcriptional regulator compare
PFLU_RS07160 -2.3 -14.5 response regulator conserved
PFLU_RS31215 -2.3 -3.7 hypothetical protein compare
PFLU_RS25750 -2.3 -6.1 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PFLU_RS25730 -2.3 -15.4 PAS domain S-box protein compare
PFLU_RS18530 -2.3 -5.4 DNA translocase FtsK compare
PFLU_RS01320 -2.2 -9.4 phosphoenolpyruvate carboxykinase compare
PFLU_RS03970 -2.2 -9.1 carboxylating nicotinate-nucleotide diphosphorylase compare
PFLU_RS26290 -2.2 -1.3 2Fe-2S iron-sulfur cluster binding domain-containing protein compare
PFLU_RS18670 -2.2 -2.1 NADH-quinone oxidoreductase subunit M compare
PFLU_RS18655 -2.2 -2.5 NADH-quinone oxidoreductase subunit J compare
PFLU_RS03765 -2.2 -10.9 sulfate adenylyltransferase subunit CysD compare
PFLU_RS25360 -2.1 -7.6 glutamate 5-kinase compare
PFLU_RS07165 -2.1 -13.0 sensor histidine kinase conserved
PFLU_RS04660 -2.1 -5.5 division/cell wall cluster transcriptional repressor MraZ compare
PFLU_RS24025 -2.1 -10.4 quinolinate synthase NadA compare
PFLU_RS02455 -2.1 -2.7 3',5'-cyclic-AMP phosphodiesterase compare
PFLU_RS24095 -2.1 -3.0 crossover junction endodeoxyribonuclease RuvC compare
PFLU_RS25920 -2.0 -2.1 outer membrane protein assembly factor BamE compare
PFLU_RS31800 -2.0 -2.0 hypothetical protein compare
PFLU_RS07650 -2.0 -11.7 fatty acid oxidation complex subunit alpha FadB compare
PFLU_RS30160 -2.0 -3.3 ParB/RepB/Spo0J family partition protein compare
PFLU_RS25645 -1.9 -1.3 acetolactate synthase small subunit compare
PFLU_RS19170 -1.9 -3.9 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
PFLU_RS24085 -1.9 -4.1 Holliday junction branch migration DNA helicase RuvB compare
PFLU_RS05965 -1.9 -1.3 hypothetical protein compare
PFLU_RS25585 -1.9 -1.3 exodeoxyribonuclease V subunit alpha compare
PFLU_RS26145 -1.9 -2.0 hypothetical protein compare
PFLU_RS28645 -1.9 -12.2 phosphoenolpyruvate--protein phosphotransferase compare
PFLU_RS27620 -1.9 -13.4 acyl-CoA dehydrogenase compare
PFLU_RS24090 -1.9 -3.7 Holliday junction branch migration protein RuvA compare
PFLU_RS18615 -1.9 -2.7 NADH-quinone oxidoreductase subunit A compare
PFLU_RS02365 -1.8 -10.7 glycosyltransferase compare
PFLU_RS29735 -1.8 -9.2 HlyC/CorC family transporter compare
PFLU_RS01960 -1.8 -1.7 ATP-dependent protease ATPase subunit HslU compare
PFLU_RS24485 -1.8 -10.0 hypothetical protein compare
PFLU_RS01965 -1.8 -2.0 ATP-dependent protease subunit HslV compare
PFLU_RS18675 -1.8 -2.3 NADH-quinone oxidoreductase subunit NuoN compare
PFLU_RS03555 -1.8 -1.3 EscS/YscS/HrcS family type III secretion system export apparatus protein compare
PFLU_RS07785 -1.8 -10.1 VacJ family lipoprotein compare
PFLU_RS01485 -1.7 -11.3 cellulase compare
PFLU_RS18625 -1.7 -6.2 NADH-quinone oxidoreductase subunit C/D compare
PFLU_RS28650 -1.7 -7.2 RNA pyrophosphohydrolase compare
PFLU_RS30165 -1.7 -8.3 ParA family protein compare
PFLU_RS18620 -1.7 -4.5 NADH-quinone oxidoreductase subunit B compare
PFLU_RS04430 -1.7 -7.8 ATP-binding cassette domain-containing protein compare
PFLU_RS18665 -1.7 -3.7 NADH-quinone oxidoreductase subunit L compare
PFLU_RS25225 -1.7 -7.8 disulfide bond formation protein B compare
PFLU_RS08165 -1.6 -2.3 acyl carrier protein compare
PFLU_RS29095 -1.6 -14.1 polyphosphate kinase 1 compare
PFLU_RS09980 -1.6 -12.0 peptidase S41 compare
PFLU_RS04435 -1.6 -6.6 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
PFLU_RS07150 -1.6 -9.0 tripartite tricarboxylate transporter substrate binding protein conserved
PFLU_RS30645 -1.6 -3.4 type II toxin-antitoxin system HicA family toxin compare
PFLU_RS13540 -1.6 -4.3 3-phosphoshikimate 1-carboxyvinyltransferase compare
PFLU_RS27475 -1.6 -6.1 symmetrical bis(5'-nucleosyl)-tetraphosphatase compare
PFLU_RS07665 -1.6 -1.1 type I DNA topoisomerase compare
PFLU_RS26595 -1.6 -2.0 lipoprotein compare
PFLU_RS00510 -1.6 -10.9 CitMHS family transporter conserved
PFLU_RS23680 -1.6 -10.9 long-chain fatty acid--CoA ligase compare
PFLU_RS04715 -1.6 -4.9 D-alanine--D-alanine ligase compare
PFLU_RS04325 -1.6 -11.4 ribonuclease G compare
PFLU_RS25715 -1.5 -8.6 RNA polymerase-binding protein DksA compare
PFLU_RS18055 -1.5 -2.4 hydrolase compare
PFLU_RS17265 -1.5 -2.8 hypothetical protein compare
PFLU_RS23920 -1.5 -3.6 septation protein A compare
PFLU_RS26770 -1.5 -9.9 DedA family protein compare
PFLU_RS25815 -1.5 -2.0 transcription termination/antitermination protein NusA compare
PFLU_RS13665 -1.5 -1.5 MarR family transcriptional regulator compare
PFLU_RS26660 -1.4 -2.0 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH compare
PFLU_RS26640 -1.4 -8.5 septal ring lytic transglycosylase RlpA family protein compare
PFLU_RS29490 -1.4 -6.6 ribonuclease PH compare
PFLU_RS19175 -1.4 -6.8 trigger factor compare
PFLU_RS17950 -1.4 -2.6 hypothetical protein compare
PFLU_RS27380 -1.4 -8.5 anthranilate synthase component I compare
PFLU_RS25800 -1.4 -4.9 tRNA pseudouridine(55) synthase TruB compare
PFLU_RS04445 -1.4 -5.1 ABC transporter substrate-binding protein compare
PFLU_RS07525 -1.4 -1.8 cyclic nucleotide-binding domain-containing protein compare
PFLU_RS04440 -1.4 -7.8 outer membrane lipid asymmetry maintenance protein MlaD compare
PFLU_RS29275 -1.4 -4.6 DUF484 family protein compare
PFLU_RS31830 -1.3 -1.2 hypothetical protein compare
PFLU_RS25740 -1.3 -4.8 polynucleotide adenylyltransferase PcnB compare
PFLU_RS14550 -1.3 -6.8 UTP--glucose-1-phosphate uridylyltransferase GalU compare
PFLU_RS20520 -1.3 -7.4 colicin V production protein CvpA compare
PFLU_RS29400 -1.3 -2.3 DUF1127 domain-containing protein compare
PFLU_RS07655 -1.3 -3.9 acetyl-CoA C-acyltransferase FadA compare
PFLU_RS08655 -1.3 -1.2 heme ABC transporter permease compare
PFLU_RS08665 -1.3 -1.5 cytochrome c maturation protein CcmE compare
PFLU_RS23185 -1.3 -8.2 protein-glutamate O-methyltransferase CheR compare
PFLU_RS26905 -1.3 -6.7 transcriptional regulator NrdR compare
PFLU_RS00415 -1.3 -2.0 thiol:disulfide interchange protein DsbA/DsbL compare
PFLU_RS21060 -1.3 -3.5 TetR/AcrR family transcriptional regulator compare
PFLU_RS24670 -1.2 -2.2 HigA family addiction module antidote protein compare
PFLU_RS28895 -1.2 -1.8 DUF2388 domain-containing protein compare
PFLU_RS18635 -1.2 -2.8 NADH-quinone oxidoreductase subunit NuoF compare
PFLU_RS03075 -1.2 -1.8 translation initiation factor Sui1 compare
PFLU_RS08155 -1.2 -3.6 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
PFLU_RS07225 -1.2 -9.1 L-aspartate oxidase compare
PFLU_RS22600 -1.2 -1.6 RNA polymerase sigma factor SigX compare
PFLU_RS11980 -1.2 -5.4 precorrin-6A synthase (deacetylating) compare
PFLU_RS26735 -1.2 -6.4 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PFLU_RS15310 -1.2 -2.1 YgdI/YgdR family lipoprotein compare
PFLU_RS06870 -1.2 -6.9 GNAT family N-acetyltransferase compare
PFLU_RS21665 -1.2 -5.2 MinD/ParA family protein compare
PFLU_RS27375 -1.2 -3.4 aminodeoxychorismate/anthranilate synthase component II compare
PFLU_RS29900 -1.1 -7.2 DNA helicase II compare
PFLU_RS29550 -1.1 -5.9 ATP-dependent DNA helicase RecG compare
PFLU_RS24785 -1.1 -6.1 outer membrane protein assembly factor BamB compare
PFLU_RS06555 -1.1 -6.2 OmpA family protein compare
PFLU_RS29975 -1.1 -2.4 ATP-binding cassette domain-containing protein compare
PFLU_RS02990 -1.1 -4.0 precorrin-3B C(17)-methyltransferase compare
PFLU_RS05890 -1.1 -1.2 recombination regulator RecX compare
PFLU_RS15420 -1.1 -2.7 hypothetical protein compare
PFLU_RS08625 -1.1 -3.4 molybdenum cofactor biosynthesis protein B compare
PFLU_RS02050 -1.1 -7.5 NAD(P)-binding protein compare
PFLU_RS27630 -1.1 -4.3 dethiobiotin synthase compare
PFLU_RS06855 -1.1 -2.5 helix-turn-helix transcriptional regulator compare
PFLU_RS29310 -1.1 -0.9 accessory factor UbiK family protein compare
PFLU_RS28665 -1.1 -7.6 threonine ammonia-lyase, biosynthetic compare
PFLU_RS23730 -1.1 -7.8 MurR/RpiR family transcriptional regulator compare
PFLU_RS13000 -1.1 -7.9 methionine synthase compare
PFLU_RS08370 -1.1 -3.2 hypothetical protein compare
PFLU_RS21645 -1.1 -6.2 chemotaxis protein CheA compare
PFLU_RS02975 -1.1 -4.8 precorrin-3B synthase compare
PFLU_RS24160 -1.1 -4.3 HAMP domain-containing protein compare
PFLU_RS30520 -1.1 -3.9 ketoacyl-ACP synthase III compare
PFLU_RS01615 -1.1 -2.3 DUF2164 domain-containing protein compare
PFLU_RS08410 -1.1 -4.3 HTH-type transcriptional regulator CysB compare
PFLU_RS07320 -1.0 -3.2 hypothetical protein compare
PFLU_RS01095 -1.0 -2.6 ribbon-helix-helix protein, CopG family compare
PFLU_RS30030 -1.0 -1.0 membrane protein compare
PFLU_RS31805 -1.0 -2.4 hypothetical protein compare
PFLU_RS04165 -1.0 -3.5 cell division protein ZapE compare
PFLU_RS26020 -1.0 -6.1 TetR/AcrR family transcriptional regulator compare
PFLU_RS05250 -1.0 -3.4 elongation factor 4 compare
PFLU_RS02460 -1.0 -6.9 alpha/beta fold hydrolase compare
PFLU_RS31100 -1.0 -2.5 preprotein translocase subunit SecG compare
PFLU_RS02980 -1.0 -1.4 precorrin-8X methylmutase compare
PFLU_RS20730 -1.0 -1.4 hypothetical protein compare


Specific Phenotypes

For 4 genes in this experiment

For carbon source Trisodium citrate dihydrate in Pseudomonas fluorescens SBW25-INTG

For carbon source Trisodium citrate dihydrate across organisms