Experiment set4IT018 for Methanococcus maripaludis JJ

Compare to:

H2 N-free with 2g/L casamino acids 10mM Ammonium chloride

200 most important genes:

  gene name fitness t score description  
MMJJ_RS05450 -6.0 -19.6 TIGR03576 family pyridoxal phosphate-dependent enzyme compare
MMJJ_RS00570 -5.8 -2.7 ribonuclease P compare
MMJJ_RS03270 -5.6 -3.0 ribosome biogenesis/translation initiation ATPase RLI compare
MMJJ_RS04485 -5.4 -10.3 riboflavin synthase compare
MMJJ_RS03615 -5.2 -3.6 cobalt-precorrin-8 methylmutase compare
MMJJ_RS03055 -5.1 -4.1 hypothetical protein compare
MMJJ_RS01935 -5.1 -5.0 O-phosphoseryl-tRNA(Sec) selenium transferase compare
MMJJ_RS04200 -5.0 -7.7 triphosphoribosyl-dephospho-CoA synthase compare
MMJJ_RS03895 -4.9 -5.1 hydrogenase expression/formation protein HypE compare
MMJJ_RS03670 -4.9 -4.8 precorrin-2 C(20)-methyltransferase compare
MMJJ_RS06625 -4.9 -2.6 pyruvate synthase subunit PorB compare
MMJJ_RS02275 -4.8 -6.5 nucleotidyltransferase domain-containing protein compare
MMJJ_RS09190 -4.8 -2.1 tryptophan synthase subunit beta compare
MMJJ_RS01600 -4.7 -3.3 radical SAM protein compare
MMJJ_RS07720 -4.7 -2.5 UPF0058 family protein compare
MMJJ_RS08855 -4.7 -3.8 cyclic pyranopterin monophosphate synthase MoaC compare
MMJJ_RS03110 -4.6 -4.5 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))- methylthiotransferase compare
MMJJ_RS05650 -4.5 -3.1 formylmethanofuran dehydrogenase subunit B compare
MMJJ_RS04730 -4.5 -3.1 tyrosine decarboxylase MfnA compare
MMJJ_RS02045 -4.5 -4.3 molybdenum cofactor guanylyltransferase compare
MMJJ_RS03580 -4.5 -4.4 TIGR00303 family protein compare
MMJJ_RS00270 -4.5 -4.4 adenosylcobinamide-GDP ribazoletransferase compare
MMJJ_RS07470 -4.5 -2.4 50S ribosome-binding GTPase compare
MMJJ_RS08035 -4.5 -9.7 cobalt-precorrin-7 (C(5))-methyltransferase compare
MMJJ_RS05070 -4.5 -2.7 DNA primase catalytic subunit PriS compare
MMJJ_RS00560 -4.5 -5.0 homoisocitrate dehydrogenase compare
MMJJ_RS00450 -4.5 -2.4 DUF126 domain-containing protein compare
MMJJ_RS08840 -4.5 -5.3 calcium/sodium antiporter compare
MMJJ_RS04995 -4.4 -6.1 Tfx family DNA-binding protein compare
MMJJ_RS02920 -4.4 -3.3 30S ribosomal protein S27ae compare
MMJJ_RS04800 -4.4 -7.3 2-phospho-L-lactate guanylyltransferase compare
MMJJ_RS03840 -4.4 -3.0 DHH family phosphoesterase compare
MMJJ_RS01880 -4.3 -4.0 RlmE family RNA methyltransferase compare
MMJJ_RS04050 -4.3 -2.7 dihydroneopterin aldolase family protein compare
MMJJ_RS02200 -4.3 -12.3 chorismate pyruvate-lyase family protein compare
MMJJ_RS03820 -4.3 -4.2 hydrogenase formation protein HypD compare
MMJJ_RS03620 -4.3 -7.4 DUF2097 domain-containing protein compare
MMJJ_RS06225 -4.3 -2.6 adenosylmethionine decarboxylase compare
MMJJ_RS08080 -4.3 -11.9 TIGR00300 family protein compare
MMJJ_RS06220 -4.2 -6.4 polyamine aminopropyltransferase compare
MMJJ_RS00580 -4.2 -2.6 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase subunit CofG compare
MMJJ_RS06155 -4.2 -6.3 phosphatidylglycerophosphatase A compare
MMJJ_RS09175 -4.1 -1.5 anthranilate synthase component I compare
MMJJ_RS01810 -4.1 -2.3 methyl coenzyme M reductase system, component A2 compare
MMJJ_RS06040 -4.1 -5.5 NADH-quinone oxidoreductase subunit H compare
MMJJ_RS02090 -4.0 -7.9 tyramine--L-glutamate ligase compare
MMJJ_RS07950 -4.0 -4.6 4Fe-4S binding protein compare
MMJJ_RS06695 -4.0 -4.1 amidohydrolase compare
MMJJ_RS04975 -4.0 -2.4 glycosyltransferase family 4 protein compare
MMJJ_RS07785 -4.0 -3.7 fumarate reductase subunit A compare
MMJJ_RS04685 -3.9 -10.7 carbamoyltransferase HypF compare
MMJJ_RS06485 -3.9 -3.8 phosphoglycerate kinase compare
MMJJ_RS06270 -3.9 -9.4 dethiobiotin synthase compare
MMJJ_RS09375 -3.9 -2.5 hypothetical protein compare
MMJJ_RS06840 -3.9 -3.8 nickel-dependent hydrogenase large subunit compare
MMJJ_RS04475 -3.9 -4.9 3,4-dihydroxy-2-butanone-4-phosphate synthase compare
MMJJ_RS04155 -3.9 -8.6 hypothetical protein compare
MMJJ_RS00645 -3.9 -15.3 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
MMJJ_RS07725 -3.8 -7.1 DNA primase DnaG compare
MMJJ_RS08095 -3.8 -5.2 cobyric acid synthase CobQ compare
MMJJ_RS06110 -3.8 -2.5 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC compare
MMJJ_RS06180 -3.8 -3.6 tryptophan--tRNA ligase compare
MMJJ_RS05620 -3.8 -4.4 CoB--CoM heterodisulfide reductase iron-sulfur subunit A family protein compare
MMJJ_RS06240 -3.7 -3.8 dihydropteroate synthase-like protein compare
MMJJ_RS03095 -3.7 -3.3 bifunctional N(6)-L-threonylcarbamoyladenine synthase/serine/threonine protein kinase compare
MMJJ_RS09135 -3.7 -11.0 archaeosine biosynthesis radical SAM protein RaSEA compare
MMJJ_RS03005 -3.7 -5.0 Ni-sirohydrochlorin a,c-diamide reductive cyclase catalytic subunit compare
MMJJ_RS05225 -3.7 -1.3 Gar1/Naf1 family protein compare
MMJJ_RS07945 -3.7 -4.7 4Fe-4S binding protein compare
MMJJ_RS01350 -3.7 -8.1 sodium:proton antiporter compare
MMJJ_RS07360 -3.6 -2.2 TIGR00269 family protein compare
MMJJ_RS03190 -3.6 -3.5 phosphopyruvate hydratase compare
MMJJ_RS03170 -3.6 -9.8 DUF5612 domain-containing protein compare
MMJJ_RS05930 -3.6 -2.7 cell division protein SepF compare
MMJJ_RS07380 -3.6 -10.0 sulfide-dependent adenosine diphosphate thiazole synthase compare
MMJJ_RS08625 -3.6 -8.6 magnesium/cobalt transporter CorA compare
MMJJ_RS05950 -3.6 -4.2 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase compare
MMJJ_RS07350 -3.6 -4.0 4Fe-4S binding protein compare
MMJJ_RS00210 -3.5 -3.4 DUF530 family protein compare
MMJJ_RS08535 -3.5 -5.1 NOL1/NOP2/sun family putative RNA methylase compare
MMJJ_RS01750 -3.5 -4.1 ferrous iron transport protein A compare
MMJJ_RS05610 -3.4 -5.6 CDP-2,3-bis-(O-geranylgeranyl)-sn-glycerol synthase compare
MMJJ_RS00600 -3.4 -3.7 hydroxymethylbilane synthase compare
MMJJ_RS05810 -3.4 -8.1 precorrin-4 C(11)-methyltransferase compare
MMJJ_RS00370 -3.4 -2.5 asparagine synthase (glutamine-hydrolyzing) compare
MMJJ_RS06010 -3.4 -6.2 hypothetical protein compare
MMJJ_RS04520 -3.4 -7.2 coenzyme F430 synthase compare
MMJJ_RS00275 -3.4 -3.3 coenzyme F420-0:L-glutamate ligase compare
MMJJ_RS03760 -3.3 -4.8 hydrogenase maturation nickel metallochaperone HypA compare
MMJJ_RS05330 -3.3 -3.2 DNA polymerase II large subunit compare
MMJJ_RS05065 -3.3 -5.0 (4-{4-[2-(gamma-L- glutamylamino)ethyl]phenoxymethyl}furan-2-yl)methanamine synthase compare
MMJJ_RS01200 -3.3 -3.2 PRC-barrel domain-containing protein compare
MMJJ_RS07000 -3.3 -2.3 TrkH family potassium uptake protein compare
MMJJ_RS06390 -3.3 -2.8 NADPH-dependent F420 reductase compare
MMJJ_RS07980 -3.3 -12.5 biotin synthase BioB compare
MMJJ_RS07875 -3.3 -2.1 FAD-dependent oxidoreductase compare
MMJJ_RS00355 -3.3 -4.1 ribonuclease P protein component 4 compare
MMJJ_RS03785 -3.3 -3.8 hypothetical protein compare
MMJJ_RS05770 -3.2 -3.1 flagellar protein D compare
MMJJ_RS05935 -3.2 -2.8 Era-like GTP-binding protein compare
MMJJ_RS08155 -3.2 -4.7 cobalt-precorrin-5B (C(1))-methyltransferase CbiD compare
MMJJ_RS03125 -3.2 -5.7 GMC oxidoreductase compare
MMJJ_RS03150 -3.2 -8.4 2-phospho-L-lactate transferase compare
MMJJ_RS04790 -3.2 -4.9 biotin--[acetyl-CoA-carboxylase] ligase compare
MMJJ_RS05445 -3.2 -2.8 2-oxoacid:acceptor oxidoreductase subunit alpha compare
MMJJ_RS07995 -3.2 -5.8 molybdenum cofactor biosynthesis protein MoaE compare
MMJJ_RS05995 -3.2 -2.7 ATP-binding cassette domain-containing protein compare
MMJJ_RS08250 -3.2 -6.9 hydrogenase maturation peptidase HycI compare
MMJJ_RS08020 -3.1 -10.2 nucleotidyltransferase domain-containing protein compare
MMJJ_RS03865 -3.1 -2.0 phosphoribosyl-AMP cyclohydrolase compare
MMJJ_RS00195 -3.1 -5.1 precorrin-3B C(17)-methyltransferase compare
MMJJ_RS06855 -3.1 -2.4 DUF2104 domain-containing protein compare
MMJJ_RS03830 -3.1 -12.9 CBS domain-containing protein compare
MMJJ_RS02055 -3.1 -12.7 GTP 3',8-cyclase MoaA compare
MMJJ_RS06490 -3.1 -3.3 methanogenesis marker 2 protein compare
MMJJ_RS01345 -3.1 -5.3 (5-formylfuran-3-yl)methyl phosphate synthase compare
MMJJ_RS08795 -3.1 -3.3 phosphoglucosamine mutase compare
MMJJ_RS06725 -3.0 -6.8 MogA/MoaB family molybdenum cofactor biosynthesis protein compare
MMJJ_RS08055 -3.0 -6.6 methanogenesis marker 14 protein compare
MMJJ_RS06260 -3.0 -8.4 6-carboxyhexanoate--CoA ligase compare
MMJJ_RS04675 -3.0 -8.1 thiamine pyrophosphate-binding protein compare
MMJJ_RS07275 -3.0 -3.5 formate--phosphoribosylaminoimidazolecarboxamide ligase compare
MMJJ_RS05490 -3.0 -3.6 imidazole glycerol phosphate synthase subunit HisF compare
MMJJ_RS05295 -3.0 -10.4 cobyrinic acid a,c-diamide synthase compare
MMJJ_RS08660 -3.0 -4.2 acetylornithine transaminase compare
MMJJ_RS03490 -3.0 -2.5 ribonuclease VapC compare
MMJJ_RS01755 -2.9 -3.4 ferrous iron transport protein B compare
MMJJ_RS08330 -2.9 -3.9 SufD family Fe-S cluster assembly protein compare
MMJJ_RS01875 -2.9 -6.6 global nitrogen regulator NrpR compare
MMJJ_RS06600 -2.9 -2.8 DUF555 domain-containing protein compare
MMJJ_RS08870 -2.9 -1.5 2-isopropylmalate synthase compare
MMJJ_RS03295 -2.9 -14.2 PHP domain-containing protein compare
MMJJ_RS03660 -2.9 -4.4 DUF447 family protein compare
MMJJ_RS06805 -2.9 -4.1 monovalent cation/H+ antiporter subunit E compare
MMJJ_RS01690 -2.9 -3.2 methanogenesis marker 12 protein compare
MMJJ_RS05575 -2.9 -4.7 2-amino-5-formylamino-6-ribosylaminopyrimidin- 4(3H)-one 5'-monophosphate deformylase compare
MMJJ_RS05380 -2.9 -1.4 hypothetical protein compare
MMJJ_RS06700 -2.9 -5.7 L-seryl-tRNA(Sec) kinase compare
MMJJ_RS06175 -2.9 -3.2 DUF1743 domain-containing protein compare
MMJJ_RS08320 -2.9 -2.3 CDP-diacylglycerol--serine O-phosphatidyltransferase compare
MMJJ_RS08575 -2.8 -5.2 hypothetical protein compare
MMJJ_RS01415 -2.8 -3.3 beta-CASP ribonuclease aCPSF1 compare
MMJJ_RS04110 -2.8 -5.5 hypothetical protein compare
MMJJ_RS03230 -2.8 -5.0 NAD(P)/FAD-dependent oxidoreductase compare
MMJJ_RS02040 -2.8 -3.0 Asp-tRNA(Asn) amidotransferase subunit GatC compare
MMJJ_RS07455 -2.7 -7.1 coenzyme F420-reducing hydrogenase, FrhD protein compare
MMJJ_RS06250 -2.7 -3.0 nicotinamide-nucleotide adenylyltransferase compare
MMJJ_RS04970 -2.7 -2.3 DUF655 domain-containing protein compare
MMJJ_RS00205 -2.7 -6.6 adenosylcobinamide-phosphate synthase CbiB compare
MMJJ_RS06255 -2.7 -7.7 tRNA uridine(34) 5-carboxymethylaminomethyl modification radical SAM/GNAT enzyme Elp3 compare
MMJJ_RS05720 -2.7 -3.4 glutamine--fructose-6-phosphate transaminase (isomerizing) compare
MMJJ_RS04650 -2.6 -6.7 nitrogenase iron protein compare
MMJJ_RS05260 -2.6 -5.3 ATP-grasp domain-containing protein compare
MMJJ_RS00215 -2.6 -3.0 CCA tRNA nucleotidyltransferase compare
MMJJ_RS03845 -2.6 -4.5 translation initiation factor IF-2 compare
MMJJ_RS07375 -2.6 -8.6 tRNA 2-thiocytidine biosynthesis TtcA family protein compare
MMJJ_RS03815 -2.6 -2.6 nascent polypeptide-associated complex protein compare
MMJJ_RS03060 -2.6 -3.7 methanogenesis marker 7 protein compare
MMJJ_RS04150 -2.6 -2.7 DUF5379 domain-containing protein compare
MMJJ_RS07715 -2.6 -3.4 UbiD family decarboxylase compare
MMJJ_RS04145 -2.6 -6.3 glutamate-1-semialdehyde 2,1-aminomutase compare
MMJJ_RS06215 -2.6 -5.7 agmatinase compare
MMJJ_RS07155 -2.6 -9.0 [5-(aminomethyl)furan-3-yl]methyl phosphate kinase compare
MMJJ_RS05590 -2.6 -2.3 homoserine dehydrogenase compare
MMJJ_RS06510 -2.6 -3.7 LL-diaminopimelate aminotransferase compare
MMJJ_RS09130 -2.5 -2.0 NFYB/HAP3 family transcription factor subunit compare
MMJJ_RS08405 -2.5 -13.7 nickel-dependent hydrogenase large subunit compare
MMJJ_RS06930 -2.5 -2.9 type II methionyl aminopeptidase compare
MMJJ_RS06760 -2.5 -5.2 Ni-sirohydrochlorin a,c-diamide synthase compare
MMJJ_RS08010 -2.5 -6.5 phosphoadenosine phosphosulfate reductase family protein compare
MMJJ_RS01360 -2.5 -2.7 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
MMJJ_RS04980 -2.5 -5.0 bifunctional precorrin-2 dehydrogenase/sirohydrochlorin ferrochelatase compare
MMJJ_RS04565 -2.5 -3.3 sirohydrochlorin nickelochelatase compare
MMJJ_RS06375 -2.5 -4.1 UbiX family flavin prenyltransferase compare
MMJJ_RS08340 -2.4 -5.1 archaeoflavoprotein AfpA compare
MMJJ_RS03765 -2.4 -8.1 hypothetical protein compare
MMJJ_RS06910 -2.4 -3.9 energy-converting NiFe hydrogenase A subunit EhaA compare
MMJJ_RS06015 -2.4 -11.3 Na(+)/H(+) antiporter subunit B compare
MMJJ_RS07430 -2.4 -3.9 ribonuclease VapC compare
MMJJ_RS03650 -2.4 -6.2 class I SAM-dependent methyltransferase family protein compare
MMJJ_RS01355 -2.4 -4.1 UDP-N-acetyl-D-mannosamine dehydrogenase compare
MMJJ_RS04655 -2.4 -5.2 FAD-dependent oxidoreductase compare
MMJJ_RS04010 -2.4 -6.2 archaeal proteasome endopeptidase complex subunit alpha compare
MMJJ_RS01870 -2.4 -2.4 methanogenesis marker 15 protein compare
MMJJ_RS03225 -2.4 -3.4 4Fe-4S binding protein compare
MMJJ_RS07265 -2.4 -9.3 tRNA (adenine-N1)-methyltransferase compare
MMJJ_RS07410 -2.4 -4.1 methanogenesis marker protein Mmp4/MtxX compare
MMJJ_RS06000 -2.4 -5.1 cation:proton antiporter subunit C compare
MMJJ_RS03065 -2.4 -9.9 CBS domain-containing protein compare
MMJJ_RS06875 -2.4 -2.0 hypothetical protein compare
MMJJ_RS06705 -2.3 -4.7 bifunctional NADP phosphatase/NAD kinase compare
MMJJ_RS07245 -2.3 -5.4 amidohydrolase family protein compare
MMJJ_RS06785 -2.3 -7.4 RNA ligase partner protein compare
MMJJ_RS08000 -2.3 -6.6 HesA/MoeB/ThiF family protein compare
MMJJ_RS06185 -2.3 -3.7 cobalamin biosynthesis protein compare
MMJJ_RS06750 -2.3 -2.8 homoaconitase large subunit compare
MMJJ_RS05655 -2.3 -6.3 HisA/HisF family protein compare
MMJJ_RS06020 -2.3 -6.5 hypothetical protein compare
MMJJ_RS04760 -2.2 -14.9 5,10-methenyltetrahydromethanopterin hydrogenase cofactor biosynthesis protein HmdC compare
MMJJ_RS08620 -2.2 -4.0 DUF373 family protein compare


Specific Phenotypes

None in this experiment

For Methanococcus maripaludis JJ in nitrogen source experiments

For nitrogen source casamino acids across organisms