Experiment set4IT018 for Pantoea sp. MT58

Compare to:

nitrogen source Sodium nitrate 20mM

200 most important genes:

  gene name fitness t score description  
IAI47_07165 -4.8 -3.3 exodeoxyribonuclease I compare
IAI47_13195 -4.8 -3.3 DNA starvation/stationary phase protection protein Dps compare
IAI47_13180 -4.3 -11.1 manganese-binding transcriptional regulator MntR compare
IAI47_09185 -4.3 -8.2 glutamine amidotransferase compare
IAI47_05070 -4.2 -1.7 outer membrane protein assembly factor BamB compare
IAI47_00460 -3.9 -2.7 glutamate--ammonia ligase compare
IAI47_12790 -3.9 -1.5 chromosome partition protein MukE compare
IAI47_11190 -3.8 -12.8 nitrate- and nitrite sensing domain-containing protein conserved
IAI47_09240 -3.8 -6.7 HTH-type transcriptional regulator CysB compare
IAI47_04120 -3.8 -22.4 GTP diphosphokinase compare
IAI47_16830 -3.7 -18.4 ornithine carbamoyltransferase compare
IAI47_03860 -3.7 -16.6 diaminopimelate decarboxylase compare
IAI47_09165 -3.7 -14.5 tryptophan synthase subunit alpha compare
IAI47_18045 -3.7 -14.6 phosphoribosylamine--glycine ligase compare
IAI47_16015 -3.5 -8.3 3-isopropylmalate dehydratase small subunit compare
IAI47_04930 -3.5 -22.5 phosphoribosylformylglycinamidine synthase compare
IAI47_09175 -3.5 -15.2 bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF compare
IAI47_13745 -3.4 -6.5 2-oxoglutarate dehydrogenase E1 component compare
IAI47_01040 -3.4 -15.6 threonine ammonia-lyase, biosynthetic compare
IAI47_05180 -3.4 -17.4 phosphoribosylformylglycinamidine cyclo-ligase compare
IAI47_17185 -3.4 -10.7 RNA polymerase factor sigma-54 compare
IAI47_09170 -3.3 -16.8 tryptophan synthase subunit beta compare
IAI47_14355 -3.3 -14.0 5-(carboxyamino)imidazole ribonucleotide synthase compare
IAI47_11170 -3.3 -17.7 nitrite reductase small subunit NirD conserved
IAI47_05275 -3.3 -9.2 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
IAI47_15635 -3.3 -3.8 RNA polymerase-binding protein DksA compare
IAI47_07060 -3.3 -14.1 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
IAI47_16205 -3.3 -11.0 threonine synthase compare
IAI47_07075 -3.2 -11.9 imidazole glycerol phosphate synthase subunit HisH compare
IAI47_11180 -3.2 -10.6 nitrate ABC transporter permease compare
IAI47_16115 -3.2 -20.3 carbamoyl-phosphate synthase large subunit compare
IAI47_04300 -3.2 -10.5 recombinase RecA compare
IAI47_16120 -3.2 -12.3 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
IAI47_09180 -3.2 -16.9 anthranilate phosphoribosyltransferase compare
IAI47_00895 -3.2 -19.5 phosphoenolpyruvate carboxylase compare
IAI47_18530 -3.2 -3.4 thioredoxin TrxA compare
IAI47_06235 -3.1 -10.0 4-phosphoerythronate dehydrogenase PdxB compare
IAI47_16215 -3.1 -18.4 bifunctional aspartate kinase/homoserine dehydrogenase I compare
IAI47_14350 -3.1 -10.8 5-(carboxyamino)imidazole ribonucleotide mutase compare
IAI47_00915 -3.1 -15.4 argininosuccinate synthase compare
IAI47_00910 -3.0 -11.5 acetylglutamate kinase compare
IAI47_09275 -3.0 -10.6 orotidine-5'-phosphate decarboxylase compare
IAI47_12645 -3.0 -6.5 porin OmpA compare
IAI47_03725 -3.0 -12.4 phosphoglycerate dehydrogenase compare
IAI47_00920 -3.0 -14.9 argininosuccinate lyase compare
IAI47_14945 -3.0 -2.9 pyrroline-5-carboxylate reductase compare
IAI47_17225 -3.0 -17.7 sulfite reductase subunit alpha compare
IAI47_15540 -3.0 -13.9 bifunctional uridylyltransferase/uridylyl-removing protein GlnD compare
IAI47_05440 -3.0 -12.8 cysteine synthase A compare
IAI47_12865 -3.0 -15.0 3-phosphoserine/phosphohydroxythreonine transaminase compare
IAI47_16000 -3.0 -16.9 2-isopropylmalate synthase compare
IAI47_00455 -3.0 -12.4 nitrogen regulation protein NR(II) compare
IAI47_17220 -3.0 -22.9 glutamate synthase large subunit compare
IAI47_04160 -3.0 -14.4 phosphoadenylyl-sulfate reductase compare
IAI47_16210 -2.9 -14.2 homoserine kinase compare
IAI47_03975 -2.9 -15.7 amino-acid N-acetyltransferase compare
IAI47_09190 -2.9 -15.0 anthranilate synthase component 1 compare
IAI47_13695 -2.9 -1.6 colicin uptake protein TolR compare
IAI47_18040 -2.9 -17.7 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
IAI47_07070 -2.9 -9.4 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
IAI47_07080 -2.9 -10.6 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
IAI47_16005 -2.9 -14.3 3-isopropylmalate dehydrogenase compare
IAI47_00450 -2.9 -14.2 nitrogen regulation protein NR(I) compare
IAI47_13770 -2.9 -15.2 citrate synthase compare
IAI47_00600 -2.9 -11.9 orotate phosphoribosyltransferase compare
IAI47_01050 -2.9 -17.1 ketol-acid reductoisomerase compare
IAI47_09805 -2.9 -14.2 bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG compare
IAI47_16350 -2.9 -11.2 phosphoserine phosphatase compare
IAI47_18830 -2.9 -3.0 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
IAI47_07090 -2.9 -12.0 histidinol dehydrogenase compare
IAI47_15115 -2.8 -13.4 glutamate-5-semialdehyde dehydrogenase compare
IAI47_01030 -2.8 -15.2 branched-chain amino acid transaminase compare
IAI47_01035 -2.8 -17.3 dihydroxy-acid dehydratase compare
IAI47_13900 -2.7 -16.7 asparagine synthase B compare
IAI47_16010 -2.7 -15.7 3-isopropylmalate dehydratase large subunit compare
IAI47_06275 -2.7 -16.7 amidophosphoribosyltransferase compare
IAI47_04895 -2.7 -6.5 pyridoxine 5'-phosphate synthase compare
IAI47_18015 -2.7 -15.2 homoserine O-succinyltransferase compare
IAI47_04190 -2.7 -9.3 adenylyl-sulfate kinase compare
IAI47_12705 -2.7 -13.5 quinone-dependent dihydroorotate dehydrogenase compare
IAI47_16080 -2.7 -10.3 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
IAI47_12915 -2.7 -11.4 leucine-responsive transcriptional regulator Lrp compare
IAI47_02695 -2.6 -12.5 3'(2'),5'-bisphosphate nucleotidase CysQ compare
IAI47_08450 -2.6 -6.0 Holliday junction branch migration DNA helicase RuvB compare
IAI47_07095 -2.5 -10.2 ATP phosphoribosyltransferase compare
IAI47_07085 -2.5 -12.8 histidinol-phosphate transaminase compare
IAI47_12215 -2.5 -13.7 dihydroorotase compare
IAI47_16860 -2.5 -13.7 aspartate carbamoyltransferase compare
IAI47_15810 -2.5 -4.1 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
IAI47_21655 -2.5 -1.4 LacI family DNA-binding transcriptional regulator compare
IAI47_00905 -2.5 -10.9 N-acetyl-gamma-glutamyl-phosphate reductase compare
IAI47_07065 -2.5 -11.0 imidazole glycerol phosphate synthase subunit HisF compare
IAI47_10520 -2.4 -4.5 pyridoxamine 5'-phosphate oxidase compare
IAI47_15120 -2.4 -9.2 glutamate 5-kinase compare
IAI47_04410 -2.4 -14.1 bifunctional chorismate mutase/prephenate dehydratase compare
IAI47_11185 -2.4 -11.2 ABC transporter substrate-binding protein conserved
IAI47_00780 -2.3 -5.3 6-phosphofructokinase compare
IAI47_04155 -2.3 -12.7 assimilatory sulfite reductase (NADPH) hemoprotein subunit compare
IAI47_00880 -2.2 -12.0 cystathionine gamma-synthase compare
IAI47_11175 -2.2 -7.0 ABC transporter ATP-binding protein conserved
IAI47_04150 -2.2 -11.7 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit compare
IAI47_04175 -2.2 -8.4 uroporphyrinogen-III C-methyltransferase compare
IAI47_13685 -2.2 -2.4 Tol-Pal system protein TolB compare
IAI47_12945 -2.1 -12.9 ATP-dependent Clp protease ATP-binding subunit ClpA compare
IAI47_05155 -2.0 -14.0 polyphosphate kinase 1 compare
IAI47_13935 -2.0 -2.2 tRNA-Gln compare
IAI47_05465 -1.9 -5.8 bile acid:sodium symporter compare
IAI47_17000 -1.9 -11.1 lipoprotein NlpI compare
IAI47_21335 -1.9 -3.7 RepB family plasmid replication initiator protein compare
IAI47_00110 -1.8 -8.0 glyoxylate/hydroxypyruvate reductase GhrB compare
IAI47_08700 -1.8 -7.8 RNA chaperone ProQ compare
IAI47_11165 -1.8 -11.4 nitrate reductase conserved
IAI47_09010 -1.8 -7.3 formyltetrahydrofolate deformylase compare
IAI47_17005 -1.8 -8.7 polyribonucleotide nucleotidyltransferase compare
IAI47_11160 -1.8 -6.8 uroporphyrinogen-III C-methyltransferase compare
IAI47_08445 -1.8 -1.3 Holliday junction branch migration protein RuvA compare
IAI47_05745 -1.7 -3.3 protease FtsH-inhibitory lysogeny factor CIII compare
IAI47_18400 -1.7 -3.1 tyrosine recombinase XerC compare
IAI47_00900 -1.6 -9.5 acetylornithine deacetylase compare
IAI47_13475 -1.6 -3.4 molybdopterin synthase catalytic subunit MoaE compare
IAI47_05195 -1.6 -3.3 DnaA inactivator Hda compare
IAI47_05315 -1.6 -8.9 response regulator compare
IAI47_03855 -1.6 -6.2 LysR family transcriptional regulator compare
IAI47_21830 -1.6 -1.6 hypothetical protein compare
IAI47_00430 -1.6 -10.2 DNA polymerase I compare
IAI47_16195 -1.6 -8.2 transaldolase compare
IAI47_03820 -1.5 -3.6 site-specific tyrosine recombinase XerD compare
IAI47_09040 -1.5 -1.3 NAD-dependent epimerase compare
IAI47_18315 -1.5 -4.1 HTH-type transcriptional regulator MetR compare
IAI47_13690 -1.4 -1.2 cell envelope integrity protein TolA compare
IAI47_18055 -1.4 -5.2 DNA-binding protein HU-alpha compare
IAI47_18410 -1.4 -3.5 diaminopimelate epimerase compare
IAI47_08165 -1.4 -7.9 flagella biosynthesis regulatory protein FliZ compare
IAI47_00300 -1.4 -1.6 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
IAI47_12470 -1.4 -9.5 UvrY/SirA/GacA family response regulator transcription factor compare
IAI47_13480 -1.4 -3.9 molybdopterin synthase sulfur carrier subunit compare
IAI47_21235 -1.4 -1.3 hypothetical protein compare
IAI47_10925 -1.4 -4.5 EAL domain-containing protein compare
IAI47_08705 -1.3 -9.1 carboxy terminal-processing peptidase compare
IAI47_17035 -1.3 -2.4 ribosome maturation factor RimP compare
IAI47_15990 -1.3 -10.2 acetolactate synthase 3 large subunit compare
IAI47_01120 -1.3 -6.5 manganese efflux pump MntP compare
IAI47_08440 -1.3 -2.7 crossover junction endodeoxyribonuclease RuvC compare
IAI47_15985 -1.3 -5.1 acetolactate synthase small subunit compare
IAI47_07885 -1.3 -1.0 tRNA-Asn compare
IAI47_18715 -1.3 -2.7 YibL family ribosome-associated protein compare
IAI47_00500 -1.3 -8.7 ATP-dependent DNA helicase RecG compare
IAI47_10320 -1.3 -2.2 Rrf2 family transcriptional regulator compare
IAI47_04110 -1.3 -10.9 two-component sensor histidine kinase BarA compare
IAI47_13840 -1.3 -3.1 replication initiation negative regulator SeqA compare
IAI47_18405 -1.3 -4.7 DUF484 domain-containing protein compare
IAI47_11415 -1.2 -2.1 hypothetical protein compare
IAI47_00510 -1.2 -4.1 bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase compare
IAI47_10725 -1.2 -2.5 DUF1656 domain-containing protein compare
IAI47_05320 -1.2 -8.3 nitrate/nitrite two-component system sensor histidine kinase NarQ compare
IAI47_14775 -1.2 -3.7 transcriptional regulator NrdR compare
IAI47_01045 -1.2 -5.2 HTH-type transcriptional activator IlvY compare
IAI47_06355 -1.2 -6.9 transcriptional regulator LrhA compare
IAI47_11200 -1.2 -3.2 DotU family type IV/VI secretion system protein compare
IAI47_05035 -1.1 -3.0 nucleoside-diphosphate kinase compare
IAI47_03680 -1.1 -6.8 transketolase compare
IAI47_13290 -1.1 -7.5 DNA-binding protein YbiB conserved
IAI47_13140 -1.1 -5.5 molybdopterin molybdotransferase MoeA compare
IAI47_20705 -1.1 -1.5 sulfur carrier protein ThiS compare
IAI47_07930 -1.1 -1.3 DUF2158 domain-containing protein compare
IAI47_05425 -1.1 -4.1 phosphoenolpyruvate-protein phosphotransferase PtsI compare
IAI47_13485 -1.0 -3.8 cyclic pyranopterin monophosphate synthase MoaC compare
IAI47_15895 -1.0 -1.6 secA regulator SecM compare
IAI47_11760 -1.0 -1.3 TonB-dependent siderophore receptor compare
IAI47_14580 -1.0 -7.8 ammonium transporter AmtB conserved
IAI47_00505 -1.0 -4.5 tRNA (guanosine(18)-2'-O)-methyltransferase TrmH compare
IAI47_17215 -1.0 -0.9 aerobic respiration two-component sensor histidine kinase ArcB compare
IAI47_15340 -1.0 -5.5 hydroxyacylglutathione hydrolase compare
IAI47_16190 -1.0 -3.7 molybdopterin adenylyltransferase compare
IAI47_18535 -1.0 -6.9 ATP-dependent RNA helicase RhlB compare
IAI47_04805 -1.0 -4.8 outer membrane protein assembly factor BamE compare
IAI47_07550 -1.0 -1.3 tRNA-Asn compare
IAI47_18250 -0.9 -4.2 transcription/translation regulatory transformer protein RfaH compare
IAI47_13145 -0.9 -4.8 molybdopterin-synthase adenylyltransferase MoeB compare
IAI47_21765 -0.9 -1.2 YoeB-YefM toxin-antitoxin system antitoxin YefM compare
IAI47_09305 -0.9 -2.2 cyclic di-GMP phosphodiesterase compare
IAI47_06900 -0.9 -3.2 phosphatase PAP2 family protein compare
IAI47_16870 -0.9 -4.0 2-iminobutanoate/2-iminopropanoate deaminase compare
IAI47_06115 -0.9 -7.4 long-chain fatty acid transporter FadL compare
IAI47_18540 -0.9 -4.5 guanosine-5'-triphosphate,3'-diphosphate diphosphatase compare
IAI47_13545 -0.9 -5.0 6-phosphogluconolactonase compare
IAI47_16085 -0.9 -1.2 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
IAI47_02350 -0.9 -1.0 tRNA-Thr compare
IAI47_00070 -0.8 -5.9 O-acetylserine/cysteine exporter compare
IAI47_08225 -0.8 -5.2 phosphate starvation-inducible protein PhoH compare
IAI47_04870 -0.8 -3.6 elongation factor 4 compare
IAI47_06475 -0.8 -3.2 transcriptional regulator RcsB compare
IAI47_14075 -0.8 -1.5 transcription antiterminator/RNA stability regulator CspE compare
IAI47_00930 -0.8 -5.2 DNA-binding transcriptional regulator OxyR compare
IAI47_08430 -0.8 -2.5 dihydroneopterin triphosphate diphosphatase compare
IAI47_15995 -0.8 -1.5 leu operon leader peptide compare
IAI47_06245 -0.8 -2.6 tRNA pseudouridine(38-40) synthase TruA compare
IAI47_14585 -0.7 -4.2 P-II family nitrogen regulator compare
IAI47_12920 -0.7 -2.3 thioredoxin-disulfide reductase compare
IAI47_13755 -0.7 -3.8 succinate dehydrogenase flavoprotein subunit compare


Specific Phenotypes

For 12 genes in this experiment

For nitrogen source Sodium nitrate in Pantoea sp. MT58

For nitrogen source Sodium nitrate across organisms