Experiment set4IT018 for Sphingomonas koreensis DSMZ 15582

Compare to:

LB with Nalidixic acid sodium salt 0.025 mg/ml

200 most detrimental genes:

  gene name fitness t score description  
Ga0059261_3938 +1.0 7.7 Imidazolonepropionase and related amidohydrolases compare
Ga0059261_3937 +1.0 8.8 Imidazolonepropionase and related amidohydrolases compare
Ga0059261_3939 +1.0 6.3 transcriptional regulator, TetR family compare
Ga0059261_3992 +0.7 2.7 Uncharacterized protein conserved in bacteria compare
Ga0059261_3637 +0.7 2.1 Uncharacterized protein conserved in bacteria compare
Ga0059261_3451 +0.7 1.8 hypothetical protein compare
Ga0059261_4224 +0.7 1.7 hypothetical protein compare
Ga0059261_3807 +0.6 3.4 Uncharacterized conserved protein compare
Ga0059261_1500 +0.6 3.1 phosphoadenylylsulfate reductase (thioredoxin) (EC 1.8.4.8) compare
Ga0059261_2713 +0.6 1.7 hypothetical protein compare
Ga0059261_2663 +0.6 1.4 Domain of unknown function (DUF718) compare
Ga0059261_3569 +0.6 2.2 chaperone protein DnaJ compare
Ga0059261_1830 +0.6 1.3 hypothetical protein compare
Ga0059261_0239 +0.6 1.1 tryptophan synthase, alpha chain (EC 4.2.1.20) compare
Ga0059261_2413 +0.6 1.7 hypothetical protein compare
Ga0059261_1538 +0.6 2.2 Predicted transcriptional regulators compare
Ga0059261_0811 +0.5 2.1 Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family compare
Ga0059261_1406 +0.5 1.7 Acetyltransferase (GNAT) family compare
Ga0059261_4007 +0.5 1.4 Transcriptional regulators compare
Ga0059261_1339 +0.5 1.3 hypothetical protein compare
Ga0059261_3882 +0.5 1.7 dimethyladenosine transferase (EC 2.1.1.-) compare
Ga0059261_0266 +0.5 1.2 hypothetical protein compare
Ga0059261_0690 +0.5 1.3 Acetyltransferases compare
Ga0059261_4192 +0.5 1.5 ATPases involved in chromosome partitioning compare
Ga0059261_3708 +0.5 2.4 GAF domain-containing protein compare
Ga0059261_0208 +0.5 2.3 Response regulator receiver domain compare
Ga0059261_3027 +0.5 2.1 Predicted transcriptional regulators compare
Ga0059261_0723 +0.5 1.6 hypothetical protein compare
Ga0059261_1756 +0.4 0.9 Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes compare
Ga0059261_3684 +0.4 2.5 hypothetical protein compare
Ga0059261_1847 +0.4 2.1 hypothetical protein compare
Ga0059261_0252 +0.4 1.5 SpoIIAA-like compare
Ga0059261_1315 +0.4 1.8 Alpha/beta hydrolase family compare
Ga0059261_3366 +0.4 1.3 hypothetical protein compare
Ga0059261_0411 +0.4 1.2 Uncharacterized conserved protein compare
Ga0059261_1759 +0.4 2.0 Phosphoadenosine phosphosulfate reductase family compare
Ga0059261_0659 +0.4 1.8 transcriptional regulator, HxlR family compare
Ga0059261_1381 +0.4 2.1 Membrane protease subunits, stomatin/prohibitin homologs compare
Ga0059261_0060 +0.4 1.4 Uncharacterized conserved protein compare
Ga0059261_3839 +0.4 2.0 hypothetical protein compare
Ga0059261_1762 +0.4 1.0 hypothetical protein compare
Ga0059261_1962 +0.4 1.4 RNase HII (EC 3.1.26.4) compare
Ga0059261_0816 +0.4 1.3 hypothetical protein compare
Ga0059261_3227 +0.4 0.8 GTP-binding protein YchF compare
Ga0059261_3491 +0.4 2.6 hypothetical protein compare
Ga0059261_2730 +0.4 0.8 Sortase and related acyltransferases compare
Ga0059261_3522 +0.4 2.1 Micrococcal nuclease (thermonuclease) homologs compare
Ga0059261_1335 +0.4 1.7 Predicted ATPase compare
Ga0059261_3598 +0.4 1.7 Flp pilus assembly protein, pilin Flp compare
Ga0059261_1772 +0.4 1.0 MobA/MobL family compare
Ga0059261_1716 +0.4 2.3 Uncharacterized protein conserved in bacteria compare
Ga0059261_4046 +0.4 1.2 Response regulator receiver domain compare
Ga0059261_3971 +0.4 1.0 Uncharacterized protein conserved in bacteria compare
Ga0059261_0957 +0.4 0.6 Protein of unknown function (DUF2798) compare
Ga0059261_2939 +0.4 2.1 Uncharacterized protein conserved in bacteria compare
Ga0059261_2245 +0.4 2.8 hypothetical protein compare
Ga0059261_3783 +0.4 1.9 hypothetical protein compare
Ga0059261_3367 +0.3 1.8 hypothetical protein compare
Ga0059261_2231 +0.3 1.8 Uncharacterized conserved protein compare
Ga0059261_3928 +0.3 1.4 Predicted thioesterase compare
Ga0059261_3997 +0.3 1.7 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases compare
Ga0059261_2391 +0.3 0.8 Helix-turn-helix domain compare
Ga0059261_3056 +0.3 1.3 Protein of unknown function (DUF2958) compare
Ga0059261_2995 +0.3 1.4 hypothetical protein compare
Ga0059261_3153 +0.3 1.2 Uncharacterized protein conserved in bacteria compare
Ga0059261_2830 +0.3 1.6 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Ga0059261_1423 +0.3 2.5 Trypsin-like peptidase domain compare
Ga0059261_0853 +0.3 1.0 peroxiredoxin, Ohr subfamily compare
Ga0059261_1939 +0.3 0.7 putative phosphoesterase compare
Ga0059261_3441 +0.3 1.5 hypothetical protein compare
Ga0059261_0894 +0.3 1.7 hypothetical protein compare
Ga0059261_0380 +0.3 1.8 Uncharacterized conserved small protein compare
Ga0059261_3308 +0.3 1.2 Uncharacterized conserved protein compare
Ga0059261_3437 +0.3 0.8 hypothetical protein compare
Ga0059261_1126 +0.3 1.4 Response regulator compare
Ga0059261_3164 +0.3 1.9 Protein of unknown function (DUF3297) compare
Ga0059261_3327 +0.3 1.6 hypothetical protein compare
Ga0059261_2568 +0.3 1.5 P-type conjugative transfer protein TrbJ compare
Ga0059261_2466 +0.3 2.4 DnaJ domain/DnaJ C terminal domain compare
Ga0059261_1021 +0.3 1.1 hypothetical protein compare
Ga0059261_0413 +0.3 2.1 N-acyl-L-homoserine lactone synthetase compare
Ga0059261_3825 +0.3 1.6 thiol reductant ABC exporter, CydD subunit compare
Ga0059261_3251 +0.3 1.0 Transcriptional regulator compare
Ga0059261_0102 +0.3 2.3 endopeptidase La compare
Ga0059261_2090 +0.3 1.6 flagellar basal-body rod protein FlgC compare
Ga0059261_3696 +0.3 1.7 hypothetical protein compare
Ga0059261_2992 +0.3 1.3 Biopolymer transport protein compare
Ga0059261_4161 +0.3 2.3 Predicted phosphoesterase compare
Ga0059261_0623 +0.3 1.2 ABC-type Fe3+-siderophore transport system, permease component compare
Ga0059261_1273 +0.3 1.3 DnaJ domain compare
Ga0059261_3374 +0.3 1.5 NAD-dependent aldehyde dehydrogenases compare
Ga0059261_3059 +0.3 1.8 Uncharacterized conserved protein compare
Ga0059261_3609 +0.3 1.4 Protein of unknown function (DUF2945) compare
Ga0059261_1783 +0.3 1.6 Transposase and inactivated derivatives compare
Ga0059261_2885 +0.3 1.5 Electron transfer flavoprotein, alpha subunit compare
Ga0059261_2326 +0.3 1.5 Phosphohistidine phosphatase SixA compare
Ga0059261_2277 +0.3 0.8 hypothetical protein compare
Ga0059261_3546 +0.3 1.5 hypothetical protein compare
Ga0059261_1763 +0.3 1.0 hypothetical protein compare
Ga0059261_2678 +0.3 1.8 DNA-binding ferritin-like protein (oxidative damage protectant) compare
Ga0059261_3965 +0.3 1.9 formimidoylglutamate deiminase (EC 3.5.3.13) compare
Ga0059261_1092 +0.3 0.9 flagellar motor switch protein FliN compare
Ga0059261_1093 +0.3 1.9 flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF) compare
Ga0059261_1652 +0.3 0.6 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily compare
Ga0059261_3125 +0.3 0.5 Imidazoleglycerol-phosphate synthase compare
Ga0059261_2229 +0.3 0.9 Predicted transcriptional regulators compare
Ga0059261_3248 +0.3 1.9 Uncharacterized conserved protein compare
Ga0059261_0911 +0.3 0.8 Domain of unknown function (DUF3597) compare
Ga0059261_1398 +0.3 1.7 Sulfite oxidase and related enzymes compare
Ga0059261_0246 +0.3 0.6 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare
Ga0059261_3700 +0.3 1.2 Transcriptional regulator compare
Ga0059261_0734 +0.3 1.9 RNA compare
Ga0059261_0675 +0.3 1.2 hypothetical protein compare
Ga0059261_1361 +0.3 2.2 sugar transferase, PEP-CTERM system associated/exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase compare
Ga0059261_3755 +0.3 0.8 Protein of unknown function (DUF2798) compare
Ga0059261_2897 +0.3 1.1 hypothetical protein compare
Ga0059261_2843 +0.3 1.5 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Ga0059261_3285 +0.3 0.9 Acyl dehydratase compare
Ga0059261_2547 +0.3 0.5 tRNA compare
Ga0059261_3659 +0.3 1.4 PqqD family protein, HPr-rel-A system compare
Ga0059261_3703 +0.3 1.5 Uncharacterized conserved protein compare
Ga0059261_1914 +0.3 0.7 Acetyltransferases compare
Ga0059261_4225 +0.2 0.9 3-isopropylmalate dehydratase, small subunit compare
Ga0059261_4191 +0.2 1.6 polysaccharide chain length determinant protein, PEP-CTERM locus subfamily compare
Ga0059261_2062 +0.2 1.4 flagellar biosynthetic protein FliP compare
Ga0059261_1099 +0.2 1.9 diguanylate cyclase (GGDEF) domain compare
Ga0059261_3440 +0.2 0.6 hypothetical protein compare
Ga0059261_1942 +0.2 1.6 putative efflux pump, required for thallium (I) resistance (from data) compare
Ga0059261_0464 +0.2 0.6 hypothetical protein compare
Ga0059261_2862 +0.2 1.7 Protein of unknown function (DUF2889) compare
Ga0059261_0357 +0.2 0.7 hypothetical protein compare
Ga0059261_4030 +0.2 1.4 glutamate N-acetyltransferase (EC 2.3.1.35) compare
Ga0059261_0907 +0.2 1.3 Predicted transcriptional regulators compare
Ga0059261_0654 +0.2 1.1 Chemotaxis signal transduction protein compare
Ga0059261_4146 +0.2 1.7 phage shock protein B compare
Ga0059261_3661 +0.2 2.0 Uncharacterised nucleotidyltransferase compare
Ga0059261_3407 +0.2 1.8 Superfamily II DNA and RNA helicases compare
Ga0059261_1881 +0.2 1.1 Predicted membrane protein compare
Ga0059261_3786 +0.2 1.4 Malic enzyme compare
Ga0059261_1856 +0.2 1.0 hypothetical protein compare
Ga0059261_0366 +0.2 1.7 Predicted integral membrane protein compare
Ga0059261_1729 +0.2 1.4 Surface presentation of antigens (SPOA) compare
Ga0059261_3345 +0.2 0.5 TlyA family rRNA methyltransferase/putative hemolysin compare
Ga0059261_0203 +0.2 1.1 FKBP-type peptidyl-prolyl cis-trans isomerase compare
Ga0059261_4194 +0.2 1.5 Type II secretory pathway, component ExeA (predicted ATPase) compare
Ga0059261_2044 +0.2 1.8 peptide chain release factor 3 compare
Ga0059261_4134 +0.2 0.6 tRNA compare
Ga0059261_2420 +0.2 0.9 transcriptional regulator, TetR family compare
Ga0059261_0898 +0.2 0.9 Membrane protein implicated in regulation of membrane protease activity compare
Ga0059261_1569 +0.2 0.9 Response regulator receiver domain compare
Ga0059261_3340 +0.2 1.4 Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) compare
Ga0059261_3427 +0.2 1.3 Uncharacterized conserved protein compare
Ga0059261_0549 +0.2 1.5 Domain of Unknown Function (DUF1080) compare
Ga0059261_0586 +0.2 1.0 hypothetical protein compare
Ga0059261_1943 +0.2 1.6 NAD-dependent protein deacetylases, SIR2 family compare
Ga0059261_2570 +0.2 0.9 Type IV secretory pathway, TrbD component compare
Ga0059261_3879 +0.2 1.1 outer membrane autotransporter barrel domain compare
Ga0059261_3702 +0.2 1.4 NAD(P)H:quinone oxidoreductase, type IV compare
Ga0059261_2858 +0.2 1.1 Enoyl-CoA hydratase/carnithine racemase compare
Ga0059261_1208 +0.2 1.2 hypothetical protein compare
Ga0059261_3706 +0.2 1.0 RF-1 domain compare
Ga0059261_0964 +0.2 0.9 Superfamily II DNA and RNA helicases compare
Ga0059261_0807 +0.2 1.0 RNA methyltransferase, RsmE family compare
Ga0059261_3658 +0.2 1.9 hypothetical protein compare
Ga0059261_2823 +0.2 1.4 Probable taurine catabolism dioxygenase compare
Ga0059261_1717 +0.2 1.0 hypothetical protein compare
Ga0059261_4010 +0.2 1.6 hypothetical protein compare
Ga0059261_2042 +0.2 1.3 Galactose mutarotase and related enzymes compare
Ga0059261_3283 +0.2 1.8 hypothetical protein compare
Ga0059261_2080 +0.2 1.4 Uncharacterized enzyme involved in biosynthesis of extracellular polysaccharides compare
Ga0059261_0846 +0.2 1.2 Zn-dependent alcohol dehydrogenases, class III compare
Ga0059261_1519 +0.2 1.1 NUDIX domain compare
Ga0059261_3888 +0.2 1.4 Major Facilitator Superfamily compare
Ga0059261_1114 +0.2 0.8 hypothetical protein compare
Ga0059261_1499 +0.2 1.0 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
Ga0059261_3634 +0.2 0.9 Predicted membrane protein compare
Ga0059261_3862 +0.2 1.2 Multidrug resistance efflux pump compare
Ga0059261_3233 +0.2 1.3 Uncharacterized protein conserved in bacteria compare
Ga0059261_2362 +0.2 1.6 Phage protein D compare
Ga0059261_1952 +0.2 1.3 Cupin domain compare
Ga0059261_0983 +0.2 1.9 TonB dependent receptor/TonB-dependent Receptor Plug Domain compare
Ga0059261_0626 +0.2 0.9 Fructose-2,6-bisphosphatase compare
Ga0059261_3604 +0.2 0.8 Uncharacterized protein conserved in bacteria compare
Ga0059261_3562 +0.2 0.8 Glycosyltransferase compare
Ga0059261_1213 +0.2 0.7 hypothetical protein compare
Ga0059261_2796 +0.2 1.1 hypothetical protein compare
Ga0059261_2218 +0.2 1.3 hypothetical protein compare
Ga0059261_3237 +0.2 1.0 hypothetical protein compare
Ga0059261_0205 +0.2 1.2 DNA-3-methyladenine glycosylase I (EC 3.2.2.20) compare
Ga0059261_2736 +0.2 0.9 hypothetical protein compare
Ga0059261_1012 +0.2 1.3 EF hand compare
Ga0059261_1147 +0.2 1.4 Bacterial flagellin N-terminal helical region/Bacterial flagellin C-terminal helical region compare
Ga0059261_2462 +0.2 1.0 Predicted transcriptional regulators compare
Ga0059261_3058 +0.2 1.3 hypothetical protein compare
Ga0059261_3445 +0.2 1.3 PHP domain compare
Ga0059261_0980 +0.2 1.4 polyhydroxyalkanoate synthesis repressor PhaR compare
Ga0059261_3033 +0.2 1.5 ATPase, P-type (transporting), HAD superfamily, subfamily IC/heavy metal translocating P-type ATPase compare
Ga0059261_0371 +0.2 1.6 DNA mismatch repair protein MutL compare
Ga0059261_0550 +0.2 1.5 Hydroxypyruvate isomerase compare
Ga0059261_0028 +0.2 1.1 Predicted transcriptional regulators compare


Specific Phenotypes

For 1 genes in this experiment

For stress Nalidixic acid sodium salt in Sphingomonas koreensis DSMZ 15582

For stress Nalidixic acid sodium salt across organisms