Experiment set4IT017 for Rhodanobacter denitrificans FW104-10B01

R2A with silver chloride 1 mM

Group: stress
Media: R2A + silver chloride (1 mM)
Culturing: rhodanobacter_10B01_ML12, 96 deep-well microplate; 0.8 mL volume, Aerobic, at 28 (C), shaken=700 rpm
By: Hans Carlson and Trenton Owens on 22-Jun-21
Media components: 0.5 g/L Bacto Peptone, 0.5 g/L casamino acids, 0.5 g/L Yeast Extract, 0.5 g/L D-Glucose, 0.5 g/L Starch, 0.3 g/L Potassium phosphate dibasic, 0.05 g/L Magnesium Sulfate Heptahydrate, 0.3 g/L Sodium pyruvate
Growth plate: 3 C1

Specific Phenotypes

For 13 genes in this experiment

For stress silver chloride in Rhodanobacter denitrificans FW104-10B01

For stress silver chloride across organisms

SEED Subsystems

Subsystem	#Specific
Sodium Hydrogen Antiporter	3
Biogenesis of c-type cytochromes	1
Peptidyl-prolyl cis-trans isomerase	1
Periplasmic disulfide interchange	1
Potassium homeostasis	1
Ribosome biogenesis bacterial	1
YbbK	1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

• Pyrimidine metabolism

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway	#Steps	#Present	#Specific
pseudouridine degradation	2	1	1