Experiment set4IT017 for Pseudomonas syringae pv. syringae B728a

Compare to:

KB with Rifampicin 0.1 mg/ml

200 most important genes:

  gene name fitness t score description  
Psyr_0951 -6.0 -4.1 UBA/THIF-type NAD/FAD binding fold:MoeZ/MoeB compare
Psyr_4740 -4.8 -7.9 thiazole-phosphate synthase compare
Psyr_4340 -4.4 -6.7 phosphomethylpyrimidine kinase, putative compare
Psyr_1613 -4.3 -5.1 septum site-determining protein MinC compare
Psyr_1544 -4.3 -4.2 SirA-like protein compare
Psyr_3008 -3.8 -9.8 Undecaprenyl-diphosphatase compare
Psyr_4341 -3.4 -9.4 thiamine-phosphate diphosphorylase compare
Psyr_2485 -3.2 -12.2 RND efflux system, outer membrane lipoprotein, NodT compare
Psyr_4362 -2.9 -5.0 Rare lipoprotein A compare
Psyr_0917 -2.8 -13.1 ABC-2 compare
Psyr_0918 -2.8 -13.9 ABC transporter compare
Psyr_2483 -2.8 -14.1 Acriflavin resistance protein compare
Psyr_2484 -2.7 -12.3 Acriflavin resistance protein compare
Psyr_5133 -2.7 -5.3 tRNA modification GTPase trmE compare
Psyr_4687 -2.7 -9.3 biotin synthase compare
Psyr_1373 -2.6 -3.5 Peptidoglycan-binding LysM:Peptidase M23B compare
Psyr_0565 -2.4 -9.2 Protein of unknown function UPF0126 compare
Psyr_4686 -2.3 -6.8 8-amino-7-oxononanoate synthase compare
Psyr_0475 -2.3 -5.0 Protein of unknown function YGGT compare
Psyr_4683 -2.1 -4.9 dethiobiotin synthase compare
Psyr_0849 -2.0 -10.1 CDP-diacylglycerol--serine O-phosphatidyltransferase compare
Psyr_0454 -2.0 -5.3 adenosylmethionine-8-amino-7-oxononanoate aminotransferase apoenzyme compare
Psyr_2080 -2.0 -8.5 aminodeoxychorismate synthase, subunit I compare
Psyr_4091 -2.0 -4.1 8-oxo-dGTPase compare
Psyr_1410 -1.9 -4.5 Holliday junction DNA helicase RuvB compare
Psyr_3701 -1.8 -3.5 thioredoxin, putative compare
Psyr_4151 -1.7 -2.0 Phosphocarrier HPr protein compare
Psyr_2482 -1.7 -6.6 Secretion protein HlyD compare
Psyr_1251 -1.7 -3.8 quinoprotein compare
Psyr_4991 -1.7 -2.7 hypothetical protein compare
Psyr_1751 -1.6 -6.0 PpiC-type peptidyl-prolyl cis-trans isomerase compare
Psyr_3135 -1.5 -2.3 transcriptional regulator, GntR family compare
Psyr_1268 -1.5 -6.6 extracellular solute-binding protein, family 3:SLT compare
Psyr_3013 -1.5 -1.9 magnesium chelatase subunit ChlD compare
Psyr_3808 -1.5 -2.8 hypothetical protein compare
Psyr_0941 -1.4 -6.3 Conserved hypothetical protein 92 compare
Psyr_1543 -1.4 -7.9 Peptidase M48, Ste24p compare
Psyr_1614 -1.3 -3.6 lipid A biosynthesis acyltransferase compare
Psyr_0826 -1.3 -6.3 glucose-6-phosphate isomerase compare
Psyr_4361 -1.3 -3.2 penicillin-binding protein 6, Serine peptidase, MEROPS family S11 compare
Psyr_2980 -1.3 -2.4 UDP-glucose pyrophosphorylase compare
Psyr_2347 -1.3 -2.9 hypothetical protein compare
Psyr_3954 -1.2 -4.3 GTP-binding protein LepA compare
Psyr_3202 -1.2 -1.6 NADH dehydrogenase subunit G compare
Psyr_0529 -1.2 -4.3 Glycosyl transferase, group 1 compare
Psyr_2481 -1.2 -1.9 thiol peroxidase (atypical 2-Cys peroxiredoxin) compare
Psyr_4141 -1.2 -4.6 ABC transporter compare
Psyr_4203 -1.2 -1.9 SsrA-binding protein compare
Psyr_1528 -1.2 -3.6 Arc-like DNA binding protein compare
Psyr_4843 -1.1 -5.3 NUDIX hydrolase compare
Psyr_5102 -1.1 -2.5 ABC transporter compare
Psyr_2927 -1.1 -1.7 transcriptional regulator, TetR family compare
Psyr_4622 -1.1 -3.6 Nucleotidyl transferase compare
Psyr_4424 -1.1 -5.9 Propeptide, PepSY amd peptidase M4:PepSY-associated TM helix compare
Psyr_3458 -1.1 -2.4 Flagellar hook-basal body complex protein FliE compare
Psyr_0369 -1.1 -4.6 lipoprotein, putative compare
Psyr_1417 -1.1 -4.6 TPR repeat protein compare
Psyr_3179 -1.1 -2.2 DNA translocase FtsK compare
Psyr_1249 -1.1 -4.1 histidyl-tRNA synthetase compare
Psyr_3419 -1.1 -3.1 4Fe-4S ferredoxin, iron-sulfur binding protein compare
Psyr_3287 -1.1 -2.4 DNA topoisomerase I compare
Psyr_1408 -1.0 -2.2 Holliday junction endonuclease RuvC compare
Psyr_4684 -1.0 -2.1 biotin synthesis protein BioC compare
Psyr_0976 -1.0 -3.5 Malate:quinone-oxidoreductase compare
Psyr_4634 -1.0 -1.5 Polynucleotide adenylyltransferase:Metal-dependent phosphohydrolase, HD subdomain protein compare
Psyr_1419 -1.0 -2.6 preQ(0) biosynthesis protein QueC compare
Psyr_1650 -1.0 -2.0 aminodeoxychorismate lyase apoprotein compare
Psyr_0215 -1.0 -6.6 Exodeoxyribonuclease III xth compare
Psyr_5067 -1.0 -4.0 conserved hypothetical protein compare
Psyr_5132 -1.0 -2.0 Glucose-inhibited division protein A subfamily compare
Psyr_4158 -1.0 -6.1 conserved hypothetical protein compare
Psyr_3020 -1.0 -2.5 precorrin-4 C11-methyltransferase compare
Psyr_3208 -0.9 -1.8 NADH dehydrogenase subunit M compare
Psyr_0259 -0.9 -2.4 Osmolarity sensor protein envZ compare
Psyr_4893 -0.9 -2.0 imidazole glycerol phosphate synthase subunit hisF compare
Psyr_2897 -0.9 -4.1 regulatory protein, LuxR:Response regulator receiver compare
Psyr_4416 -0.9 -2.4 precorrin-8X methylmutase compare
Psyr_1910 -0.9 -3.8 VacJ-like lipoprotein compare
Psyr_1505 -0.9 -2.3 Protein of unknown function DUF156 compare
Psyr_4842 -0.9 -4.8 Phosphoenolpyruvate-protein phosphotransferase compare
Psyr_4194 -0.9 -2.5 DnaJ central region:Heat shock protein DnaJ, N-terminal:Chaperone DnaJ, C-terminal compare
Psyr_1277 -0.9 -2.3 formate-dependent phosphoribosylglycinamide formyltransferase compare
Psyr_4363 -0.9 -3.4 membrane-bound lytic murein transglycosylase B compare
Psyr_1667 -0.9 -3.5 Colicin V production protein compare
Psyr_1424 -0.9 -2.5 Peptidase S24, S26A and S26B compare
Psyr_0579 -0.9 -6.1 RNAse R compare
Psyr_4512 -0.9 -4.0 putative phage-related protein compare
Psyr_1864 -0.9 -3.5 spermidine synthase compare
Psyr_3807 -0.9 -4.7 hypothetical protein compare
Psyr_4887 -0.8 -5.3 Peptidase S41A, C-terminal protease compare
Psyr_4808 -0.8 -1.9 conserved hypothetical protein compare
Psyr_1334 -0.8 -2.2 Cysteine desulfuration protein SufE compare
Psyr_1236 -0.8 -1.8 transcriptional regulator, BadM/Rrf2 family compare
Psyr_RNA28 -0.8 -1.4 tRNA-Val compare
Psyr_2292 -0.8 -1.5 L-glutaminase compare
Psyr_0014 -0.8 -2.5 lipid A biosynthesis acyltransferase compare
Psyr_1843 -0.8 -1.6 Protein of unknown function DUF1311 compare
Psyr_1556 -0.8 -2.1 hypothetical protein compare
Psyr_3835 -0.8 -2.0 hypothetical protein compare
Psyr_RNA61 -0.8 -2.0 tRNA-Gly compare
Psyr_3665 -0.8 -2.1 conserved hypothetical protein compare
Psyr_0857 -0.8 -2.1 [SSU ribosomal protein S18P]-alanine acetyltransferase compare
Psyr_0137 -0.8 -1.4 outer membrane transport energization protein ExbD compare
Psyr_3480 -0.8 -2.5 Flagellar basal-body rod protein FlgC compare
Psyr_3084 -0.8 -2.1 Response regulator receiver:Transcriptional regulatory protein, C-terminal compare
Psyr_0927 -0.8 -2.2 hypothetical protein compare
Psyr_3728 -0.8 -3.6 hypothetical protein compare
Psyr_1198 -0.8 -1.6 type III secretion protein HrpF compare
Psyr_1747 -0.8 -2.3 ATP-dependent Clp protease proteolytic subunit ClpP compare
Psyr_2339 -0.8 -2.2 hypothetical protein compare
Psyr_1894 -0.7 -4.1 SNF2-related:Helicase, C-terminal:SWIM Zn-finger compare
Psyr_1930 -0.7 -2.5 hypothetical protein compare
Psyr_3809 -0.7 -3.2 hypothetical protein compare
Psyr_3739 -0.7 -1.3 conserved hypothetical protein compare
Psyr_4057 -0.7 -1.6 regulatory protein, LysR:LysR, substrate-binding protein compare
Psyr_5135 -0.7 -1.6 Protein of unknown function DUF37 compare
Psyr_1748 -0.7 -3.4 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Psyr_3795 -0.7 -1.7 hypothetical protein compare
Psyr_4001 -0.7 -1.2 conserved domain protein compare
Psyr_3034 -0.7 -1.8 conserved hypothetical protein compare
Psyr_4407 -0.7 -1.3 phosphoribosylamine--glycine ligase compare
Psyr_4115 -0.7 -1.4 phosphoheptose isomerase compare
Psyr_2190 -0.7 -1.7 NADH:flavin oxidoreductase/NADH oxidase compare
Psyr_1955 -0.7 -1.8 Propeptide, PepSY amd peptidase M4:PepSY-associated TM helix compare
Psyr_2642 -0.7 -2.3 hypothetical protein compare
Psyr_4498 -0.7 -1.8 outer membrane transport energization protein ExbD compare
Psyr_0410 -0.7 -4.6 conserved hypothetical protein compare
Psyr_1970 -0.7 -3.3 Secretion protein HlyD compare
Psyr_2514 -0.7 -2.7 ABC transporter compare
Psyr_1379 -0.7 -0.9 Regulatory protein RecX compare
Psyr_1460 -0.7 -2.9 hypothetical protein compare
Psyr_0574 -0.7 -2.9 protease FtsH subunit HflK compare
Psyr_4940 -0.7 -1.7 3'(2'),5'-bisphosphate nucleotidase compare
Psyr_2088 -0.7 -1.2 2-methylaconitate cis-trans isomerase compare
Psyr_0020 -0.7 -3.9 Peptidoglycan-binding LysM compare
Psyr_3193 -0.7 -1.3 Transcription factor jumonji, jmjC compare
Psyr_0831 -0.7 -1.6 Two-component response regulator CbrB compare
Psyr_0487 -0.7 -1.7 glutathione synthase compare
Psyr_0889 -0.6 -2.3 SpoVT/AbrB-like protein compare
Psyr_3915 -0.6 -2.3 Alpha/beta hydrolase fold protein compare
Psyr_4806 -0.6 -3.2 hypothetical protein compare
Psyr_2242 -0.6 -2.4 conserved hypothetical protein compare
Psyr_1989 -0.6 -3.4 galactonate dehydratase compare
Psyr_1372 -0.6 -2.3 Protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
Psyr_4139 -0.6 -2.7 Mce4/Rv3499c/MTV023.06c protein compare
Psyr_3199 -0.6 -1.5 NADH dehydrogenase subunit D / NADH dehydrogenase subunit C compare
Psyr_2557 -0.6 -1.0 Phosphoenolpyruvate synthase/pyruvate phosphate dikinase-like protein compare
Psyr_0356 -0.6 -1.5 L-cystine ABC transporter ATP-binding protein / Diaminopimelate ABC transporter ATP-binding protein compare
Psyr_1522 -0.6 -3.2 Single-strand binding protein compare
Psyr_4618 -0.6 -2.0 regulatory protein, LuxR:Response regulator receiver compare
Psyr_0524 -0.6 -2.4 Lipopolysaccharide kinase compare
Psyr_4822 -0.6 -1.6 Helix-turn-helix, Fis-type:Nitrogen regulation protein NR(I) compare
Psyr_4804 -0.6 -1.3 conserved hypothetical protein compare
Psyr_2804 -0.6 -2.1 hypothetical protein compare
Psyr_0402 -0.6 -4.7 Peptidoglycan glycosyltransferase compare
Psyr_4144 -0.6 -1.0 Protein of unknown function DUF1239 compare
Psyr_2077 -0.6 -2.2 regulatory protein, LysR:LysR, substrate-binding protein compare
Psyr_0900 -0.6 -3.0 TRAP dicarboxylate transporter- DctP subunit compare
Psyr_3776 -0.6 -2.1 Cytosine deaminase compare
Psyr_4710 -0.6 -2.0 Binding-protein-dependent transport systems inner membrane component compare
Psyr_1919 -0.6 -3.2 hypothetical protein compare
Psyr_3854 -0.6 -0.8 OmpA/MotB compare
Psyr_0835 -0.6 -2.9 transcriptional regulator, TraR/DksA family compare
Psyr_4879 -0.6 -1.9 hypothetical protein compare
Psyr_0135 -0.6 -3.0 outer membrane transport energization protein TonB compare
Psyr_1022 -0.6 -1.4 conserved hypothetical protein compare
Psyr_2031 -0.6 -1.9 ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal compare
Psyr_2602 -0.6 -2.9 transcriptional regulator, LuxR family compare
Psyr_4593 -0.6 -1.9 sigma factor domain protein compare
Psyr_3581 -0.6 -2.3 ribosomal large subunit pseudouridine synthase B compare
Psyr_4380 -0.6 -1.3 translation initiation factor 1 (eIF-1/SUI1) compare
Psyr_4278 -0.6 -0.9 regulatory protein, LuxR compare
Psyr_3262 -0.6 -1.5 dnaK suppressor protein, putative compare
Psyr_1823 -0.6 -3.4 Twin-arginine translocation pathway signal compare
Psyr_4874 -0.6 -1.2 ABC transporter compare
Psyr_4257 -0.6 -2.8 Uncharacterized protein UPF0114 compare
Psyr_0729 -0.6 -2.4 CDS compare
Psyr_4581 -0.6 -1.4 anthranilate synthase, component II compare
Psyr_2826 -0.6 -2.0 hypothetical protein compare
Psyr_2462 -0.6 -2.4 Nitrite/sulfite reductase, hemoprotein beta-component, ferrodoxin-like:Nitrite and sulphite reductase 4Fe-4S region compare
Psyr_2266 -0.6 -1.8 Binding-protein-dependent transport systems inner membrane component compare
Psyr_4078 -0.6 -4.0 AmpG-related permease compare
Psyr_1941 -0.6 -0.9 ATP-binding region, ATPase-like:Histidine kinase compare
Psyr_4697 -0.6 -2.5 Aminoglycoside phosphotransferase compare
Psyr_1104 -0.6 -1.1 Heme oxygenase compare
Psyr_3095 -0.6 -1.8 transport system permease protein compare
Psyr_4092 -0.6 -2.6 Glutathione S-transferase, N-terminal compare
Psyr_0947 -0.5 -2.9 TPR repeat protein:TPR repeat protein compare
Psyr_1547 -0.5 -2.3 glycine cleavage system transcriptional repressor compare
Psyr_3698 -0.5 -1.6 Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal:Hpt compare
Psyr_4955 -0.5 -1.7 Protein of unknown function DUF1316 compare
Psyr_0550 -0.5 -1.6 Protein of unknown function UPF0227 compare
Psyr_2802 -0.5 -1.8 lipoprotein, putative compare
Psyr_4601 -0.5 -1.7 hypothetical protein compare
Psyr_1378 -0.5 -1.2 RecA protein compare
Psyr_2392 -0.5 -2.2 conserved hypothetical protein compare
Psyr_1965 -0.5 -2.3 Twin-arginine translocation pathway signal compare
Psyr_4013 -0.5 -3.4 Glutaconate CoA-transferase compare
Psyr_0458 -0.5 -3.2 Helicase, C-terminal:Type III restriction enzyme, res subunit:DEAD/DEAH box helicase, N-terminal compare
Psyr_1796 -0.5 -1.1 GCN5-related N-acetyltransferase compare


Specific Phenotypes

For 4 genes in this experiment

For stress Rifampicin in Pseudomonas syringae pv. syringae B728a

For stress Rifampicin across organisms