Experiment set4IT017 for Pantoea sp. MT58

Compare to:

nitrogen source Ammonium chloride 20mM

200 most detrimental genes:

  gene name fitness t score description  
IAI47_16995 +1.4 4.9 protein YrbN compare
IAI47_10835 +1.4 2.1 tRNA-Val compare
IAI47_18215 +1.4 2.2 Trk system potassium transporter TrkH compare
IAI47_01820 +1.3 9.2 two-component system response regulator OmpR compare
IAI47_01750 +1.3 8.6 glycerol-3-phosphate dehydrogenase compare
IAI47_11830 +1.3 9.2 muramoyltetrapeptide carboxypeptidase compare
IAI47_01135 +1.2 1.5 hypothetical protein compare
IAI47_01825 +1.2 8.9 two-component system sensor histidine kinase EnvZ compare
IAI47_17205 +1.1 1.5 PTS phosphocarrier protein NPr compare
IAI47_07020 +1.1 3.5 hypothetical protein compare
IAI47_02345 +1.0 1.5 5S ribosomal RNA compare
IAI47_06940 +1.0 1.1 tyrosine-protein kinase Wzc compare
IAI47_13415 +1.0 7.9 L,D-transpeptidase family protein compare
IAI47_14730 +1.0 1.5 exodeoxyribonuclease VII small subunit compare
IAI47_00935 +1.0 4.5 Si-specific NAD(P)(+) transhydrogenase compare
IAI47_15980 +0.9 7.5 catabolite repressor/activator compare
IAI47_10755 +0.9 2.0 DUF1289 domain-containing protein compare
IAI47_00770 +0.9 1.0 general stress protein compare
IAI47_14710 +0.8 4.2 YajQ family cyclic di-GMP-binding protein compare
IAI47_06400 +0.8 3.2 NADH-quinone oxidoreductase subunit J compare
IAI47_17560 +0.8 1.2 ROK family transcriptional regulator compare
IAI47_04705 +0.8 0.7 hypothetical protein compare
IAI47_06655 +0.8 2.8 1-phosphofructokinase compare
IAI47_17385 +0.8 2.8 CDP-alcohol phosphatidyltransferase family protein compare
IAI47_03440 +0.8 3.4 general stress protein compare
IAI47_06405 +0.7 3.0 NADH-quinone oxidoreductase subunit NuoK compare
IAI47_12760 +0.7 5.9 porin OmpF compare
IAI47_03610 +0.7 3.0 YqgE/AlgH family protein compare
IAI47_14695 +0.7 3.1 cytochrome o ubiquinol oxidase subunit IV compare
IAI47_15895 +0.7 1.4 secA regulator SecM compare
IAI47_09245 +0.7 3.3 YmiA family putative membrane protein compare
IAI47_15690 +0.7 3.8 hypoxanthine phosphoribosyltransferase compare
IAI47_21780 +0.7 2.1 hypothetical protein compare
IAI47_11935 +0.7 5.7 two-component system sensor histidine kinase PhoQ compare
IAI47_21770 +0.7 3.0 Txe/YoeB family addiction module toxin compare
IAI47_15970 +0.7 0.9 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
IAI47_01860 +0.7 6.3 peptidoglycan glycosyltransferase/peptidoglycan DD-transpeptidase MrcA compare
IAI47_06360 +0.7 1.7 NADH-quinone oxidoreductase subunit A compare
IAI47_05825 +0.7 3.2 hypothetical protein compare
IAI47_06365 +0.6 3.3 NADH-quinone oxidoreductase subunit B compare
IAI47_19890 +0.6 1.3 hypothetical protein compare
IAI47_14985 +0.6 2.9 hypothetical protein compare
IAI47_15920 +0.6 2.8 D-alanine--D-alanine ligase compare
IAI47_06415 +0.6 3.4 NADH-quinone oxidoreductase subunit M compare
IAI47_07905 +0.6 0.7 Arc family DNA-binding protein compare
IAI47_05630 +0.6 1.6 hypothetical protein compare
IAI47_11375 +0.6 1.4 hypothetical protein compare
IAI47_04775 +0.6 1.9 SIR2 family protein compare
IAI47_16390 +0.6 0.7 tRNA-Leu compare
IAI47_11210 +0.6 4.1 type VI secretion system-associated protein TagF compare
IAI47_02845 +0.6 5.2 penicillin-binding protein activator compare
IAI47_14545 +0.6 2.3 hypothetical protein compare
IAI47_17960 +0.6 4.3 lysine-sensitive aspartokinase 3 compare
IAI47_17285 +0.6 1.9 entericidin A/B family lipoprotein compare
IAI47_04505 +0.6 3.7 transcriptional repressor MprA compare
IAI47_02455 +0.6 4.6 ribonuclease G compare
IAI47_14980 +0.6 2.2 hypothetical protein compare
IAI47_06625 +0.6 4.4 bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase compare
IAI47_11880 +0.6 1.4 hypothetical protein compare
IAI47_11610 +0.6 3.3 serine/threonine-protein phosphatase compare
IAI47_14660 +0.6 3.7 trigger factor compare
IAI47_19030 +0.6 1.7 hypothetical protein compare
IAI47_10115 +0.6 2.3 hypothetical protein compare
IAI47_14470 +0.6 1.8 YbaB/EbfC family nucleoid-associated protein compare
IAI47_03550 +0.6 4.5 membrane-bound lytic murein transglycosylase MltC compare
IAI47_14690 +0.6 2.9 cytochrome o ubiquinol oxidase subunit III compare
IAI47_13050 +0.6 1.6 YbjN domain-containing protein compare
IAI47_17980 +0.6 3.2 capsule biosynthesis GfcC family protein compare
IAI47_14015 +0.5 2.8 ribosome silencing factor compare
IAI47_06385 +0.5 2.9 NADH-quinone oxidoreductase subunit NuoG compare
IAI47_05475 +0.5 1.8 FlxA-like family protein compare
IAI47_21355 +0.5 1.1 DUF3606 domain-containing protein compare
IAI47_05830 +0.5 1.6 hypothetical protein compare
IAI47_06380 +0.5 1.6 NADH-quinone oxidoreductase subunit NuoF compare
IAI47_01525 +0.5 2.5 DUF2500 domain-containing protein compare
IAI47_21830 +0.5 1.0 hypothetical protein compare
IAI47_14705 +0.5 3.4 MFS transporter compare
IAI47_07970 +0.5 3.0 flagellar type III secretion system protein FliR compare
IAI47_12050 +0.5 3.8 cell division protein YceG compare
IAI47_04855 +0.5 2.1 anti-sigma-E factor RseA compare
IAI47_08725 +0.5 2.1 hypothetical protein compare
IAI47_08910 +0.5 2.1 DUF1480 family protein compare
IAI47_13840 +0.5 1.8 replication initiation negative regulator SeqA compare
IAI47_17155 +0.5 3.5 calcium/sodium antiporter compare
IAI47_17460 +0.5 2.4 DotU family type IV/VI secretion system protein compare
IAI47_11930 +0.5 2.8 two-component system response regulator PhoP compare
IAI47_00840 +0.5 1.9 ribonuclease E activity regulator RraA compare
IAI47_18265 +0.5 0.6 Sec-independent protein translocase subunit TatB compare
IAI47_13850 +0.5 2.0 LexA regulated protein compare
IAI47_07525 +0.5 1.1 conjugal transfer protein TraD compare
IAI47_17900 +0.5 1.0 glycerol-3-phosphate 1-O-acyltransferase PlsB compare
IAI47_08280 +0.5 3.4 flagellar transcriptional regulator FlhD compare
IAI47_14785 +0.5 2.1 DUF3251 domain-containing protein compare
IAI47_06420 +0.5 2.5 NADH-quinone oxidoreductase subunit NuoN compare
IAI47_21345 +0.5 2.6 DUF1471 domain-containing protein compare
IAI47_13760 +0.5 1.5 succinate dehydrogenase membrane anchor subunit compare
IAI47_14210 +0.5 1.5 hypothetical protein compare
IAI47_19225 +0.5 2.3 PTS sugar transporter subunit IIB compare
IAI47_17975 +0.5 1.8 YjbF family lipoprotein compare
IAI47_11690 +0.5 2.9 type VI secretion system baseplate subunit TssK compare
IAI47_09285 +0.5 2.0 osmotically-inducible lipoprotein OsmB compare
IAI47_13750 +0.5 1.5 succinate dehydrogenase iron-sulfur subunit compare
IAI47_13755 +0.5 2.8 succinate dehydrogenase flavoprotein subunit compare
IAI47_00940 +0.4 2.4 HTH-type transcriptional repressor FabR compare
IAI47_19430 +0.4 1.4 GNAT family N-acetyltransferase compare
IAI47_13765 +0.4 1.2 succinate dehydrogenase cytochrome b556 subunit compare
IAI47_13725 +0.4 2.3 cytochrome ubiquinol oxidase subunit I compare
IAI47_16340 +0.4 3.7 multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR compare
IAI47_08465 +0.4 2.8 zinc ABC transporter substrate-binding protein ZnuA compare
IAI47_10680 +0.4 2.4 TetR/AcrR family transcriptional regulator compare
IAI47_01545 +0.4 2.1 cell division ATP-binding protein FtsE compare
IAI47_12770 +0.4 2.3 MBL fold metallo-hydrolase compare
IAI47_19050 +0.4 1.5 hypothetical protein compare
IAI47_04690 +0.4 2.2 hypothetical protein compare
IAI47_02095 +0.4 1.6 bacterioferritin-associated ferredoxin compare
IAI47_11545 +0.4 1.5 hypothetical protein compare
IAI47_16960 +0.4 2.5 SCP2 domain-containing protein compare
IAI47_06450 +0.4 1.6 ribonucleotide-diphosphate reductase subunit beta compare
IAI47_03555 +0.4 2.3 oxidative damage protection protein compare
IAI47_10345 +0.4 2.8 YdgA family protein compare
IAI47_06455 +0.4 1.9 ribonucleoside-diphosphate reductase subunit alpha compare
IAI47_05050 +0.4 1.9 cytoskeleton protein RodZ compare
IAI47_18090 +0.4 3.1 thiamine phosphate synthase compare
IAI47_06410 +0.4 2.5 NADH-quinone oxidoreductase subunit L compare
IAI47_19930 +0.4 2.2 adhesin compare
IAI47_11420 +0.4 1.0 hypothetical protein compare
IAI47_12390 +0.4 2.1 hypothetical protein compare
IAI47_09630 +0.4 2.1 type VI secretion system tube protein Hcp compare
IAI47_14680 +0.4 2.3 cytochrome o ubiquinol oxidase subunit II compare
IAI47_07280 +0.4 1.7 RluA family pseudouridine synthase compare
IAI47_19350 +0.4 1.2 DUF305 domain-containing protein compare
IAI47_14200 +0.4 1.0 hypothetical protein compare
IAI47_09845 +0.4 1.7 hypothetical protein compare
IAI47_12435 +0.4 1.1 hypothetical protein compare
IAI47_03585 +0.4 1.8 XTP/dITP diphosphatase compare
IAI47_10500 +0.4 3.0 dipeptide/tripeptide permease DtpA compare
IAI47_01535 +0.4 1.8 16S rRNA (guanine(966)-N(2))-methyltransferase compare
IAI47_15840 +0.4 2.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD compare
IAI47_18885 +0.4 2.6 LysR family transcriptional regulator compare
IAI47_02890 +0.4 2.4 EnvZ/OmpR regulon moderator MzrA compare
IAI47_20595 +0.4 1.7 GhoT/OrtT family toxin compare
IAI47_04495 +0.4 3.5 multidrug efflux MFS transporter permease subunit EmrB compare
IAI47_05875 +0.4 2.7 lysozyme compare
IAI47_02835 +0.4 2.5 DnaA initiator-associating protein DiaA compare
IAI47_10040 +0.4 1.9 helix-turn-helix transcriptional regulator compare
IAI47_09870 +0.4 1.8 LacI family DNA-binding transcriptional regulator compare
IAI47_18580 +0.4 3.2 insulinase family protein compare
IAI47_08455 +0.4 2.4 zinc ABC transporter permease subunit ZnuB compare
IAI47_21500 +0.4 1.8 H-NS histone family protein compare
IAI47_17120 +0.4 0.9 BolA family iron metabolism protein IbaG compare
IAI47_11910 +0.4 2.1 NUDIX hydrolase compare
IAI47_16600 +0.4 0.9 tRNA-OTHER compare
IAI47_05665 +0.4 1.5 hypothetical protein compare
IAI47_10295 +0.4 2.0 hypothetical protein compare
IAI47_09540 +0.4 2.9 two-component system sensor histidine kinase RstB compare
IAI47_00755 +0.4 2.8 envelope stress sensor histidine kinase CpxA compare
IAI47_10995 +0.4 1.8 type V toxin-antitoxin system endoribonuclease antitoxin GhoS compare
IAI47_00490 +0.4 2.8 AsmA family protein compare
IAI47_05065 +0.4 1.4 YfgM family protein compare
IAI47_06395 +0.4 0.6 NADH-quinone oxidoreductase subunit NuoI compare
IAI47_07015 +0.4 2.1 ABC transporter ATP-binding protein compare
IAI47_09825 +0.4 1.9 xanthine dehydrogenase accessory protein XdhC compare
IAI47_14700 +0.4 2.2 protoheme IX farnesyltransferase compare
IAI47_18420 +0.4 2.9 class I adenylate cyclase compare
IAI47_17710 +0.4 2.9 glutamate/aspartate:proton symporter GltP compare
IAI47_17075 +0.4 1.4 ribosome assembly RNA-binding protein YhbY compare
IAI47_17970 +0.4 1.3 hypothetical protein compare
IAI47_16685 +0.4 1.7 DUF2501 domain-containing protein compare
IAI47_20470 +0.4 1.8 OmpA family protein compare
IAI47_14685 +0.4 2.6 cytochrome o ubiquinol oxidase subunit I compare
IAI47_06370 +0.3 2.1 NADH-quinone oxidoreductase subunit C/D compare
IAI47_11220 +0.3 2.0 serine/threonine-protein phosphatase compare
IAI47_19505 +0.3 2.1 hypothetical protein compare
IAI47_13825 +0.3 1.6 YbfA family protein compare
IAI47_21640 +0.3 1.6 sigma-70 family RNA polymerase sigma factor compare
IAI47_06390 +0.3 1.2 NADH-quinone oxidoreductase subunit NuoH compare
IAI47_03480 +0.3 1.4 DUF2474 domain-containing protein compare
IAI47_18765 +0.3 1.1 damage-inducible protein J compare
IAI47_06650 +0.3 2.4 fused PTS fructose transporter subunit IIA/HPr protein compare
IAI47_07380 +0.3 1.5 ABC transporter ATP-binding protein compare
IAI47_11670 +0.3 1.8 type VI secretion system protein TssA compare
IAI47_20330 +0.3 1.7 LacI family DNA-binding transcriptional regulator compare
IAI47_19540 +0.3 2.3 nitroreductase family protein compare
IAI47_05515 +0.3 2.6 formate/nitrite transporter family protein compare
IAI47_07040 +0.3 0.9 acyltransferase compare
IAI47_21540 +0.3 2.3 tyrosine-type recombinase/integrase compare
IAI47_05865 +0.3 2.3 hypothetical protein compare
IAI47_12370 +0.3 0.9 acyl carrier protein compare
IAI47_12775 +0.3 2.6 YcbK family protein compare
IAI47_06530 +0.3 1.8 DNA oxidative demethylase AlkB compare
IAI47_16320 +0.3 2.0 DNA-binding transcriptional repressor DeoR compare
IAI47_14160 +0.3 1.7 DUF4186 domain-containing protein compare
IAI47_01500 +0.3 1.4 DcrB family lipoprotein compare
IAI47_06440 +0.3 2.2 nicotinamide mononucleotide deamidase-related protein YfaY compare
IAI47_05510 +0.3 2.1 putative DNA-binding transcriptional regulator compare
IAI47_16030 +0.3 2.3 thiamine ABC transporter substrate binding subunit compare
IAI47_08460 +0.3 2.4 zinc ABC transporter ATP-binding protein ZnuC compare
IAI47_08075 +0.3 1.6 hypothetical protein compare
IAI47_06165 +0.3 2.0 elongation factor P hydroxylase compare
IAI47_17985 +0.3 2.9 YjbH domain-containing protein compare


Specific Phenotypes

For 1 genes in this experiment

For nitrogen source Ammonium chloride in Pantoea sp. MT58

For nitrogen source Ammonium chloride across organisms