Experiment set4IT016 for Shewanella loihica PV-4
LB with 1-ethyl-3-methylimidazolium lysine 10 mM
Group: stressMedia: LB + 1-ethyl-3-methylimidazolium lysine (10 mM)
Culturing: PV4_ML1, 48 well microplate; Tecan Infinite F200, Aerobic, at 25 (C), shaken=orbital
By: Adam on 4/30/2014
Media components: 10 g/L Tryptone, 5 g/L Yeast Extract, 5 g/L Sodium Chloride
Growth plate: 905 F3,F4
Specific Phenotypes
For 4 genes in this experiment
For stress 1-ethyl-3-methylimidazolium lysine in Shewanella loihica PV-4
For stress 1-ethyl-3-methylimidazolium lysine across organisms
SEED Subsystems
| Subsystem | #Specific |
|---|---|
| Cysteine Biosynthesis | 1 |
| Polyamine Metabolism | 1 |
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
- Urea cycle and metabolism of amino groups
- Methionine metabolism
- Arginine and proline metabolism
- Glycerolipid metabolism
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| spermidine biosynthesis I | 2 | 2 | 1 |
| spermine biosynthesis | 2 | 1 | 1 |
| aminopropylcadaverine biosynthesis | 3 | 1 | 1 |
| spermidine biosynthesis III | 4 | 2 | 1 |
| superpathway of polyamine biosynthesis I | 8 | 5 | 1 |
| superpathway of polyamine biosynthesis II | 8 | 4 | 1 |
| L-methionine salvage cycle III | 11 | 6 | 1 |
| L-methionine salvage cycle I (bacteria and plants) | 12 | 6 | 1 |
| superpathway of arginine and polyamine biosynthesis | 17 | 14 | 1 |