Experiment set4IT015 for Pseudomonas syringae pv. syringae B728a

Compare to:

KB with Dimethyl Sulfoxide 1.25 vol%

200 most important genes:

  gene name fitness t score description  
Psyr_0951 -5.2 -5.0 UBA/THIF-type NAD/FAD binding fold:MoeZ/MoeB compare
Psyr_1613 -4.7 -4.5 septum site-determining protein MinC compare
Psyr_4740 -4.4 -8.4 thiazole-phosphate synthase compare
Psyr_1544 -4.4 -4.3 SirA-like protein compare
Psyr_3008 -4.2 -8.6 Undecaprenyl-diphosphatase compare
Psyr_4340 -3.9 -9.5 phosphomethylpyrimidine kinase, putative compare
Psyr_4686 -3.7 -6.0 8-amino-7-oxononanoate synthase compare
Psyr_4341 -3.5 -8.4 thiamine-phosphate diphosphorylase compare
Psyr_4683 -3.2 -5.7 dethiobiotin synthase compare
Psyr_0917 -3.2 -14.2 ABC-2 compare
Psyr_4687 -3.2 -8.3 biotin synthase compare
Psyr_0565 -3.0 -8.6 Protein of unknown function UPF0126 compare
Psyr_0918 -2.9 -14.7 ABC transporter compare
Psyr_0826 -2.7 -8.3 glucose-6-phosphate isomerase compare
Psyr_0454 -2.4 -6.6 adenosylmethionine-8-amino-7-oxononanoate aminotransferase apoenzyme compare
Psyr_1373 -2.3 -3.9 Peptidoglycan-binding LysM:Peptidase M23B compare
Psyr_4091 -2.3 -4.3 8-oxo-dGTPase compare
Psyr_0487 -2.1 -3.7 glutathione synthase compare
Psyr_3954 -2.1 -6.3 GTP-binding protein LepA compare
Psyr_4991 -2.0 -3.5 hypothetical protein compare
Psyr_4684 -2.0 -3.4 biotin synthesis protein BioC compare
Psyr_2080 -1.9 -7.6 aminodeoxychorismate synthase, subunit I compare
Psyr_2980 -1.9 -3.8 UDP-glucose pyrophosphorylase compare
Psyr_1650 -1.9 -2.9 aminodeoxychorismate lyase apoprotein compare
Psyr_0014 -1.8 -4.0 lipid A biosynthesis acyltransferase compare
Psyr_0849 -1.8 -10.0 CDP-diacylglycerol--serine O-phosphatidyltransferase compare
Psyr_4822 -1.8 -2.7 Helix-turn-helix, Fis-type:Nitrogen regulation protein NR(I) compare
Psyr_5133 -1.8 -4.8 tRNA modification GTPase trmE compare
Psyr_0383 -1.7 -2.3 Twin-arginine translocation protein TatB compare
Psyr_0831 -1.7 -3.1 Two-component response regulator CbrB compare
Psyr_3419 -1.6 -5.8 4Fe-4S ferredoxin, iron-sulfur binding protein compare
Psyr_0259 -1.6 -3.1 Osmolarity sensor protein envZ compare
Psyr_0255 -1.6 -2.3 glutamate-cysteine ligase compare
Psyr_3701 -1.6 -3.0 thioredoxin, putative compare
Psyr_3013 -1.6 -3.0 magnesium chelatase subunit ChlD compare
Psyr_4408 -1.5 -8.2 Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal:Histidine kinase:Histidine kinase compare
Psyr_4460 -1.5 -2.8 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II compare
Psyr_3179 -1.4 -3.6 DNA translocase FtsK compare
Psyr_0475 -1.4 -3.9 Protein of unknown function YGGT compare
Psyr_3202 -1.4 -1.9 NADH dehydrogenase subunit G compare
Psyr_1424 -1.4 -3.8 Peptidase S24, S26A and S26B compare
Psyr_4893 -1.4 -2.9 imidazole glycerol phosphate synthase subunit hisF compare
Psyr_0575 -1.4 -4.0 protease FtsH subunit HflC compare
Psyr_1751 -1.4 -3.9 PpiC-type peptidyl-prolyl cis-trans isomerase compare
Psyr_1895 -1.4 -3.1 conserved hypothetical protein compare
Psyr_4424 -1.4 -7.4 Propeptide, PepSY amd peptidase M4:PepSY-associated TM helix compare
Psyr_0529 -1.3 -4.5 Glycosyl transferase, group 1 compare
Psyr_4581 -1.3 -2.6 anthranilate synthase, component II compare
Psyr_0817 -1.3 -3.2 N-acetylmuramoyl-L-alanine amidase, family 2 compare
Psyr_1748 -1.3 -5.0 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Psyr_0393 -1.3 -4.5 Protein of unknown function DUF971 compare
Psyr_4362 -1.2 -2.5 Rare lipoprotein A compare
Psyr_0524 -1.2 -2.6 Lipopolysaccharide kinase compare
Psyr_1227 -1.2 -2.7 Queuosine biosynthesis protein compare
Psyr_2285 -1.2 -1.8 Twin-arginine translocation pathway signal compare
Psyr_0571 -1.2 -3.4 tRNA isopentenyltransferase compare
Psyr_0033 -1.2 -3.0 tryptophan synthase, alpha chain compare
Psyr_4622 -1.2 -4.0 Nucleotidyl transferase compare
Psyr_0378 -1.1 -6.4 Glycosyl transferase, family 2 compare
Psyr_1371 -1.1 -6.0 5'-nucleotidase / exopolyphosphatase / 3'-nucleotidase compare
Psyr_0579 -1.1 -7.8 RNAse R compare
Psyr_0377 -1.1 -5.8 Periplasmic glucan biosynthesis protein, MdoG compare
Psyr_2292 -1.1 -3.0 L-glutaminase compare
Psyr_4089 -1.1 -4.8 PAS compare
Psyr_4203 -1.1 -1.7 SsrA-binding protein compare
Psyr_0976 -1.1 -4.3 Malate:quinone-oxidoreductase compare
Psyr_1791 -1.0 -2.8 HAD-superfamily hydrolase, subfamily IA, variant 2 compare
Psyr_3808 -1.0 -2.5 hypothetical protein compare
Psyr_1816 -1.0 -3.9 transcriptional regulator, GntR family compare
Psyr_3287 -1.0 -2.3 DNA topoisomerase I compare
Psyr_3581 -1.0 -4.3 ribosomal large subunit pseudouridine synthase B compare
Psyr_3020 -1.0 -2.1 precorrin-4 C11-methyltransferase compare
Psyr_1930 -1.0 -3.0 hypothetical protein compare
Psyr_0532 -1.0 -4.0 conserved hypothetical protein compare
Psyr_2347 -1.0 -2.9 hypothetical protein compare
Psyr_3867 -1.0 -2.1 hypothetical protein compare
Psyr_5072 -1.0 -1.4 Cobalamin synthesis protein/P47K:Cobalamin synthesis protein/P47K compare
Psyr_3691 -0.9 -4.6 conserved hypothetical protein compare
Psyr_2855 -0.9 -2.8 methionine synthase (B12-independent) compare
Psyr_0167 -0.9 -2.5 hypothetical protein compare
Psyr_1910 -0.9 -3.2 VacJ-like lipoprotein compare
Psyr_3199 -0.9 -2.4 NADH dehydrogenase subunit D / NADH dehydrogenase subunit C compare
Psyr_4140 -0.9 -1.4 Protein of unknown function DUF140 compare
Psyr_4593 -0.9 -3.4 sigma factor domain protein compare
Psyr_0491 -0.9 -3.7 chemotaxis sensory transducer compare
Psyr_0947 -0.9 -5.1 TPR repeat protein:TPR repeat protein compare
Psyr_0531 -0.9 -1.8 LmbE-like protein compare
Psyr_2471 -0.9 -1.2 hydroxymethylglutaryl-CoA lyase compare
Psyr_3703 -0.9 -2.7 Flavodoxin/nitric oxide synthase compare
Psyr_2628 -0.9 -2.8 ABC transporter compare
Psyr_1249 -0.9 -3.6 histidyl-tRNA synthetase compare
Psyr_4407 -0.9 -2.2 phosphoribosylamine--glycine ligase compare
Psyr_1108 -0.8 -4.6 glyceraldehyde-3-phosphate dehydrogenase compare
Psyr_1372 -0.8 -3.6 Protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
Psyr_1277 -0.8 -2.3 formate-dependent phosphoribosylglycinamide formyltransferase compare
Psyr_1614 -0.8 -2.8 lipid A biosynthesis acyltransferase compare
Psyr_2854 -0.8 -3.3 conserved hypothetical protein compare
Psyr_4141 -0.8 -3.2 ABC transporter compare
Psyr_0979 -0.8 -1.4 conserved hypothetical protein compare
Psyr_1247 -0.8 -1.7 conserved hypothetical protein compare
Psyr_0827 -0.8 -2.2 pantothenate synthetase compare
Psyr_4404 -0.8 -1.8 tRNA-U20-dihydrouridine synthase compare
Psyr_0303 -0.8 -2.0 Ferredoxin:Oxidoreductase FAD/NAD(P)-binding protein compare
Psyr_3637 -0.8 -6.0 Glycosyl transferase, family 4 compare
Psyr_0281 -0.8 -2.4 ABC transporter compare
Psyr_1410 -0.8 -3.1 Holliday junction DNA helicase RuvB compare
Psyr_0645 -0.8 -3.0 3-ketoacyl-CoA thiolase compare
Psyr_0835 -0.8 -3.5 transcriptional regulator, TraR/DksA family compare
Psyr_2733 -0.8 -1.6 Short-chain dehydrogenase/reductase SDR compare
Psyr_0941 -0.8 -3.9 Conserved hypothetical protein 92 compare
Psyr_4920 -0.8 -1.2 conserved hypothetical bacteriophage protein compare
Psyr_4887 -0.8 -5.3 Peptidase S41A, C-terminal protease compare
Psyr_0574 -0.8 -3.3 protease FtsH subunit HflK compare
Psyr_2433 -0.8 -2.5 conserved hypothetical protein compare
Psyr_3632 -0.8 -2.6 conserved hypothetical protein compare
Psyr_4136 -0.8 -1.3 BolA-like protein compare
Psyr_1667 -0.8 -2.8 Colicin V production protein compare
Psyr_4309 -0.8 -3.0 hypothetical protein compare
Psyr_1678 -0.8 -1.1 Hypothetical protein compare
Psyr_3905 -0.7 -3.9 glycerol kinase compare
Psyr_5067 -0.7 -3.5 conserved hypothetical protein compare
Psyr_4512 -0.7 -3.2 putative phage-related protein compare
Psyr_0184 -0.7 -2.4 Protein of unknown function DUF484 compare
Psyr_2095 -0.7 -3.2 Conserved TM helix compare
Psyr_0920 -0.7 -6.2 Glycosyl transferase, group 1 compare
Psyr_2823 -0.7 -1.2 hypothetical protein compare
Psyr_1864 -0.7 -3.1 spermidine synthase compare
Psyr_1400 -0.7 -5.7 outer membrane porin compare
Psyr_0034 -0.7 -2.2 tryptophan synthase, beta chain compare
Psyr_4078 -0.7 -5.2 AmpG-related permease compare
Psyr_2201 -0.7 -2.4 amino acid/amide ABC transporter ATP-binding protein 2, HAAT family compare
Psyr_5135 -0.7 -1.6 Protein of unknown function DUF37 compare
Psyr_0832 -0.7 -4.3 Two-component sensor kinase CbrA compare
Psyr_3135 -0.7 -1.5 transcriptional regulator, GntR family compare
Psyr_3095 -0.7 -2.5 transport system permease protein compare
Psyr_3904 -0.7 -3.5 Major intrinsic protein compare
Psyr_0818 -0.7 -2.1 ampE protein compare
Psyr_4627 -0.7 -1.6 dimethyladenosine transferase compare
Psyr_4843 -0.7 -3.4 NUDIX hydrolase compare
Psyr_2847 -0.7 -1.9 hypothetical protein compare
Psyr_1588 -0.7 -1.7 Putative exonuclease, RdgC compare
Psyr_5065 -0.7 -3.7 ATP-dependent DNA helicase UvrD compare
Psyr_2271 -0.7 -3.8 membrane protein, putative compare
Psyr_0927 -0.7 -2.5 hypothetical protein compare
Psyr_2312 -0.7 -1.3 Protein of unknown function DUF24 compare
Psyr_3680 -0.7 -2.0 hydrogenobyrinic acid a,c-diamide synthase (glutamine-hydrolysing) / cobyrinate a,c-diamide synthase compare
Psyr_5129 -0.7 -2.5 chromosome segregation DNA-binding protein compare
Psyr_1547 -0.7 -2.1 glycine cleavage system transcriptional repressor compare
Psyr_1251 -0.7 -1.7 quinoprotein compare
Psyr_4194 -0.7 -2.6 DnaJ central region:Heat shock protein DnaJ, N-terminal:Chaperone DnaJ, C-terminal compare
Psyr_1955 -0.7 -2.4 Propeptide, PepSY amd peptidase M4:PepSY-associated TM helix compare
Psyr_4799 -0.7 -3.4 Heavy metal sensor kinase compare
Psyr_3121 -0.7 -1.8 Protein of unknown function DUF1345 compare
Psyr_4487 -0.6 -2.1 Carbohydrate kinase, PfkB compare
Psyr_2077 -0.6 -2.2 regulatory protein, LysR:LysR, substrate-binding protein compare
Psyr_1417 -0.6 -2.9 TPR repeat protein compare
Psyr_4151 -0.6 -1.0 Phosphocarrier HPr protein compare
Psyr_3337 -0.6 -1.6 gluconate kinase, SKI family compare
Psyr_2062 -0.6 -2.4 DoxD-like family protein compare
Psyr_4940 -0.6 -1.2 3'(2'),5'-bisphosphate nucleotidase compare
Psyr_3241 -0.6 -1.9 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region:D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding protein compare
Psyr_3665 -0.6 -2.1 conserved hypothetical protein compare
Psyr_3324 -0.6 -2.7 transcriptional regulator, TetR family compare
Psyr_1556 -0.6 -1.8 hypothetical protein compare
Psyr_4623 -0.6 -4.2 Aminoglycoside phosphotransferase compare
Psyr_1505 -0.6 -1.8 Protein of unknown function DUF156 compare
Psyr_0493 -0.6 -1.3 CheW-like protein compare
Psyr_3090 -0.6 -0.9 hypothetical protein compare
Psyr_1616 -0.6 -1.2 Rieske [2Fe-2S] region compare
Psyr_4336 -0.6 -1.4 ribosomal large subunit pseudouridine synthase E compare
Psyr_4476 -0.6 -2.2 dTDP-4-dehydrorhamnose reductase compare
Psyr_2769 -0.6 -2.6 conserved hypothetical protein compare
Psyr_4092 -0.6 -2.8 Glutathione S-transferase, N-terminal compare
Psyr_0490 -0.6 -2.3 CheW-like protein compare
Psyr_3262 -0.6 -1.6 dnaK suppressor protein, putative compare
Psyr_1008 -0.6 -1.8 conserved hypothetical protein compare
Psyr_5130 -0.6 -3.5 chromosome segregation ATPase compare
Psyr_2346 -0.6 -2.7 conserved hypothetical protein compare
Psyr_3596 -0.6 -2.1 Selenoprotein W-related protein compare
Psyr_2578 -0.6 -1.4 regulatory protein, LuxR compare
Psyr_0744 -0.6 -2.6 CDS compare
Psyr_4087 -0.6 -1.2 Protein of unknown function DUF520 compare
Psyr_3841 -0.6 -1.4 conserved hypothetical protein compare
Psyr_1855 -0.6 -2.4 methylthioribulose-1-phosphate dehydratase compare
Psyr_1850 -0.6 -1.2 [LSU ribosomal protein L3P]-glutamine N5-methyltransferase compare
Psyr_3676 -0.6 -2.2 adenosylcobyric acid synthase (glutamine-hydrolysing) compare
Psyr_0915 -0.6 -3.7 NAD-dependent epimerase/dehydratase compare
Psyr_0119 -0.6 -1.8 CDS compare
Psyr_0148 -0.6 -1.5 hypothetical protein compare
Psyr_4093 -0.6 -2.5 glutamate N-acetyltransferase compare
Psyr_1688 -0.6 -0.8 Protein of unknown function DUF1315 compare
Psyr_2160 -0.6 -1.3 cold-shock DNA-binding protein family compare
Psyr_1121 -0.6 -0.8 6-phosphogluconolactonase compare
Psyr_0533 -0.6 -2.0 conserved hypothetical protein compare
Psyr_2561 -0.6 -2.1 hypothetical protein compare
Psyr_1555 -0.6 -1.9 Cobyrinic acid a,c-diamide synthase compare
Psyr_4316 -0.6 -1.5 conserved hypothetical protein compare
Psyr_1138 -0.6 -0.9 GCN5-related N-acetyltransferase compare
Psyr_1887 -0.6 -2.1 CDS compare
Psyr_1747 -0.6 -2.1 ATP-dependent Clp protease proteolytic subunit ClpP compare


Specific Phenotypes

None in this experiment

For Pseudomonas syringae pv. syringae B728a in stress experiments

For stress Dimethyl Sulfoxide across organisms