Experiment set4IT014 for Pseudomonas fluorescens SBW25-INTG

Compare to:

D-Glucose carbon source; with MOPS

200 most important genes:

  gene name fitness t score description  
PFLU_RS23590 -4.7 -4.3 gluconokinase compare
PFLU_RS28695 -4.6 -7.7 phosphoglycerate dehydrogenase compare
PFLU_RS01645 -4.1 -17.2 S41 family peptidase compare
PFLU_RS22595 -3.7 -2.6 OmpA family protein compare
PFLU_RS27630 -3.6 -7.9 dethiobiotin synthase compare
PFLU_RS08160 -3.6 -6.8 sugar transferase compare
PFLU_RS23065 -3.5 -11.4 phosphate acyltransferase PlsX compare
PFLU_RS02490 -3.5 -13.9 phosphoserine phosphatase SerB compare
PFLU_RS23070 -3.4 -1.8 50S ribosomal protein L32 compare
PFLU_RS03645 -3.4 -14.7 tetratricopeptide repeat protein compare
PFLU_RS24125 -3.4 -8.9 cold-shock protein compare
PFLU_RS12975 -3.4 -6.7 DUF934 domain-containing protein compare
PFLU_RS12980 -3.4 -10.9 nitrite/sulfite reductase compare
PFLU_RS28965 -3.3 -12.3 5-formyltetrahydrofolate cyclo-ligase compare
PFLU_RS20690 -3.3 -5.8 hypothetical protein compare
PFLU_RS28535 -3.2 -17.6 dihydroxy-acid dehydratase compare
PFLU_RS23585 -3.2 -11.4 GntP family permease compare
PFLU_RS29885 -3.2 -12.5 LysR family transcriptional regulator compare
PFLU_RS29515 -3.2 -12.6 RidA family protein compare
PFLU_RS29880 -3.2 -14.2 acetyl-CoA carboxylase biotin carboxylase subunit compare
PFLU_RS29095 -3.1 -22.0 polyphosphate kinase 1 compare
PFLU_RS29875 -3.1 -16.1 oxaloacetate decarboxylase subunit alpha compare
PFLU_RS18505 -3.0 -13.0 uroporphyrinogen-III C-methyltransferase compare
PFLU_RS09055 -3.0 -4.9 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
PFLU_RS25640 -2.9 -13.6 ketol-acid reductoisomerase compare
PFLU_RS23725 -2.9 -14.6 glucose-6-phosphate dehydrogenase compare
PFLU_RS22095 -2.9 -19.3 GTP diphosphokinase compare
PFLU_RS22740 -2.9 -7.5 phosphoadenylyl-sulfate reductase compare
PFLU_RS27635 -2.9 -9.6 malonyl-ACP O-methyltransferase BioC compare
PFLU_RS25735 -2.9 -9.2 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS01605 -2.8 -9.4 imidazoleglycerol-phosphate dehydratase HisB compare
PFLU_RS20515 -2.8 -2.7 amidophosphoribosyltransferase compare
PFLU_RS25755 -2.8 -4.2 pantoate--beta-alanine ligase compare
PFLU_RS25760 -2.8 -14.7 glucose-6-phosphate isomerase compare
PFLU_RS25360 -2.8 -8.1 glutamate 5-kinase compare
PFLU_RS25750 -2.7 -6.3 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PFLU_RS06055 -2.7 -1.7 chemotaxis response regulator protein-glutamate methylesterase compare
PFLU_RS24025 -2.7 -12.5 quinolinate synthase NadA compare
PFLU_RS24330 -2.6 -8.2 phosphogluconate dehydratase compare
PFLU_RS00415 -2.6 -1.8 thiol:disulfide interchange protein DsbA/DsbL compare
PFLU_RS01620 -2.6 -9.8 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
PFLU_RS01625 -2.6 -3.2 imidazole glycerol phosphate synthase subunit HisF compare
PFLU_RS28195 -2.5 -14.4 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
PFLU_RS08165 -2.5 -2.9 acyl carrier protein compare
PFLU_RS20520 -2.4 -10.1 colicin V production protein CvpA compare
PFLU_RS23305 -2.4 -11.3 arginine N-succinyltransferase compare
PFLU_RS22070 -2.4 -5.8 phosphoribosylglycinamide formyltransferase compare
PFLU_RS27650 -2.4 -12.8 biotin synthase BioB compare
PFLU_RS02050 -2.4 -14.6 NAD(P)-binding protein compare
PFLU_RS01485 -2.3 -12.8 cellulase compare
PFLU_RS02365 -2.3 -12.3 glycosyltransferase compare
PFLU_RS26595 -2.3 -1.6 lipoprotein compare
PFLU_RS21615 -2.3 -8.6 chemotaxis protein CheW compare
PFLU_RS28655 -2.3 -13.5 HAD family hydrolase compare
PFLU_RS24085 -2.3 -3.7 Holliday junction branch migration DNA helicase RuvB compare
PFLU_RS21495 -2.3 -3.6 TlpA family protein disulfide reductase compare
PFLU_RS23310 -2.2 -10.4 arginine/ornithine succinyltransferase subunit alpha compare
PFLU_RS25815 -2.2 -1.8 transcription termination/antitermination protein NusA compare
PFLU_RS22105 -2.2 -4.9 cysteine synthase CysM compare
PFLU_RS27645 -2.2 -11.8 8-amino-7-oxononanoate synthase compare
PFLU_RS04070 -2.2 -6.5 peptide chain release factor 3 compare
PFLU_RS23185 -2.2 -11.7 protein-glutamate O-methyltransferase CheR compare
PFLU_RS26545 -2.1 -10.0 sel1 repeat family protein compare
PFLU_RS03970 -2.1 -7.6 carboxylating nicotinate-nucleotide diphosphorylase compare
PFLU_RS05750 -2.1 -2.0 methionine--tRNA ligase compare
PFLU_RS18645 -2.1 -3.2 NADH-quinone oxidoreductase subunit NuoH compare
PFLU_RS01610 -2.1 -9.8 imidazole glycerol phosphate synthase subunit HisH compare
PFLU_RS04315 -2.1 -4.5 rod shape-determining protein MreD compare
PFLU_RS29275 -2.1 -6.2 DUF484 family protein compare
PFLU_RS06870 -2.0 -9.9 GNAT family N-acetyltransferase compare
PFLU_RS08505 -2.0 -7.3 protease HtpX compare
PFLU_RS18530 -2.0 -5.4 DNA translocase FtsK compare
PFLU_RS28165 -2.0 -11.2 methylenetetrahydrofolate reductase [NAD(P)H] compare
PFLU_RS01900 -2.0 -7.2 phosphoribosyl-AMP cyclohydrolase compare
PFLU_RS21645 -2.0 -7.5 chemotaxis protein CheA compare
PFLU_RS00175 -1.9 -8.9 tryptophan synthase subunit alpha compare
PFLU_RS30525 -1.9 -8.4 SDR family oxidoreductase compare
PFLU_RS08180 -1.9 -5.2 ketoacyl-ACP synthase III compare
PFLU_RS30530 -1.9 -7.2 acetyltransferase compare
PFLU_RS24095 -1.9 -3.3 crossover junction endodeoxyribonuclease RuvC compare
PFLU_RS01895 -1.9 -5.1 phosphoribosyl-ATP diphosphatase compare
PFLU_RS18670 -1.9 -2.3 NADH-quinone oxidoreductase subunit M compare
PFLU_RS24255 -1.8 -9.7 pyruvate kinase compare
PFLU_RS00180 -1.8 -5.6 tryptophan synthase subunit beta compare
PFLU_RS24485 -1.8 -9.0 hypothetical protein compare
PFLU_RS06555 -1.8 -9.2 OmpA family protein compare
PFLU_RS30165 -1.8 -8.5 ParA family protein compare
PFLU_RS28650 -1.8 -6.3 RNA pyrophosphohydrolase compare
PFLU_RS04660 -1.8 -4.1 division/cell wall cluster transcriptional repressor MraZ compare
PFLU_RS28645 -1.8 -10.6 phosphoenolpyruvate--protein phosphotransferase compare
PFLU_RS04715 -1.8 -5.0 D-alanine--D-alanine ligase compare
PFLU_RS30030 -1.7 -1.3 membrane protein compare
PFLU_RS24670 -1.7 -2.1 HigA family addiction module antidote protein compare
PFLU_RS15810 -1.7 -3.2 hypothetical protein compare
PFLU_RS07805 -1.7 -10.9 transaldolase compare
PFLU_RS24335 -1.6 -9.4 type I glyceraldehyde-3-phosphate dehydrogenase compare
PFLU_RS01750 -1.6 -3.5 hypothetical protein compare
PFLU_RS04470 -1.6 -8.3 histidinol dehydrogenase compare
PFLU_RS18640 -1.6 -4.2 NADH-quinone oxidoreductase subunit NuoG compare
PFLU_RS25730 -1.6 -10.7 PAS domain S-box protein compare
PFLU_RS07665 -1.6 -1.1 type I DNA topoisomerase compare
PFLU_RS30520 -1.5 -5.7 ketoacyl-ACP synthase III compare
PFLU_RS11850 -1.5 -2.0 prepilin-type N-terminal cleavage/methylation domain-containing protein compare
PFLU_RS02045 -1.5 -12.1 glutamate synthase large subunit compare
PFLU_RS05890 -1.5 -1.2 recombination regulator RecX compare
PFLU_RS01615 -1.5 -3.5 DUF2164 domain-containing protein compare
PFLU_RS09550 -1.5 -2.3 hypothetical protein compare
PFLU_RS12175 -1.5 -1.1 methyl-accepting chemotaxis protein compare
PFLU_RS04150 -1.5 -4.8 DUF1043 family protein compare
PFLU_RS31100 -1.5 -3.6 preprotein translocase subunit SecG compare
PFLU_RS09500 -1.5 -1.6 hypothetical protein compare
PFLU_RS07225 -1.5 -9.4 L-aspartate oxidase compare
PFLU_RS04465 -1.5 -6.3 ATP phosphoribosyltransferase compare
PFLU_RS29280 -1.5 -5.8 tyrosine recombinase XerC compare
PFLU_RS04325 -1.5 -9.9 ribonuclease G compare
PFLU_RS07725 -1.4 -3.9 Si-specific NAD(P)(+) transhydrogenase compare
PFLU_RS25645 -1.4 -1.3 acetolactate synthase small subunit compare
PFLU_RS03770 -1.4 -8.2 sulfate adenylyltransferase subunit CysN compare
PFLU_RS30485 -1.4 -3.1 hypothetical protein compare
PFLU_RS13950 -1.4 -2.2 hypothetical protein compare
PFLU_RS25585 -1.4 -1.8 exodeoxyribonuclease V subunit alpha compare
PFLU_RS23380 -1.4 -0.9 HAD-IB family hydrolase compare
PFLU_RS26770 -1.4 -8.4 DedA family protein compare
PFLU_RS27375 -1.4 -3.9 aminodeoxychorismate/anthranilate synthase component II compare
PFLU_RS28315 -1.4 -1.2 response regulator compare
PFLU_RS20565 -1.4 -8.2 3-isopropylmalate dehydrogenase compare
PFLU_RS04435 -1.4 -5.5 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
PFLU_RS19175 -1.4 -6.2 trigger factor compare
PFLU_RS02590 -1.4 -5.1 ATP phosphoribosyltransferase regulatory subunit compare
PFLU_RS25740 -1.4 -5.1 polynucleotide adenylyltransferase PcnB compare
PFLU_RS13045 -1.3 -5.6 AAA domain-containing protein compare
PFLU_RS21580 -1.3 -2.7 MOSC domain-containing protein compare
PFLU_RS27620 -1.3 -9.4 acyl-CoA dehydrogenase compare
PFLU_RS25920 -1.3 -1.5 outer membrane protein assembly factor BamE compare
PFLU_RS09980 -1.3 -9.7 peptidase S41 compare
PFLU_RS01315 -1.3 -2.1 Hsp33 family molecular chaperone HslO compare
PFLU_RS23920 -1.3 -2.1 septation protein A compare
PFLU_RS11980 -1.3 -5.3 precorrin-6A synthase (deacetylating) compare
PFLU_RS03765 -1.3 -6.2 sulfate adenylyltransferase subunit CysD compare
PFLU_RS13715 -1.3 -1.8 MmcQ/YjbR family DNA-binding protein compare
PFLU_RS21060 -1.3 -3.0 TetR/AcrR family transcriptional regulator compare
PFLU_RS27365 -1.3 -5.9 indole-3-glycerol phosphate synthase TrpC compare
PFLU_RS18675 -1.3 -2.6 NADH-quinone oxidoreductase subunit NuoN compare
PFLU_RS08665 -1.3 -1.8 cytochrome c maturation protein CcmE compare
PFLU_RS16300 -1.3 -2.6 hypothetical protein compare
PFLU_RS17950 -1.3 -1.6 hypothetical protein compare
PFLU_RS06420 -1.3 -6.0 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
PFLU_RS29360 -1.3 -1.1 cytochrome c5 family protein compare
PFLU_RS05250 -1.3 -3.2 elongation factor 4 compare
PFLU_RS25190 -1.3 -2.2 hypothetical protein compare
PFLU_RS13540 -1.3 -3.9 3-phosphoshikimate 1-carboxyvinyltransferase compare
PFLU_RS25225 -1.3 -5.8 disulfide bond formation protein B compare
PFLU_RS18620 -1.3 -4.0 NADH-quinone oxidoreductase subunit B compare
PFLU_RS27380 -1.3 -7.3 anthranilate synthase component I compare
PFLU_RS13350 -1.3 -1.7 ParD-like family protein compare
PFLU_RS31425 -1.3 -1.1 hypothetical protein compare
PFLU_RS02990 -1.2 -4.0 precorrin-3B C(17)-methyltransferase compare
PFLU_RS05885 -1.2 -4.3 recombinase RecA compare
PFLU_RS14335 -1.2 -2.1 ABC transporter permease compare
PFLU_RS05690 -1.2 -1.1 Grx4 family monothiol glutaredoxin compare
PFLU_RS19170 -1.2 -3.3 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
PFLU_RS24090 -1.2 -3.2 Holliday junction branch migration protein RuvA compare
PFLU_RS21985 -1.2 -2.9 adenosylcobinamide-GDP ribazoletransferase compare
PFLU_RS28690 -1.2 -7.7 FAD-binding oxidoreductase compare
PFLU_RS19165 -1.2 -3.6 ATP-dependent Clp protease ATP-binding subunit ClpX compare
PFLU_RS30160 -1.2 -2.9 ParB/RepB/Spo0J family partition protein compare
PFLU_RS31065 -1.2 -2.1 helix-turn-helix domain-containing protein compare
PFLU_RS07650 -1.2 -7.6 fatty acid oxidation complex subunit alpha FadB compare
PFLU_RS02565 -1.2 -3.7 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
PFLU_RS24145 -1.2 -4.0 mechanosensitive ion channel compare
PFLU_RS31290 -1.2 -1.1 EamA family transporter compare
PFLU_RS04440 -1.1 -6.8 outer membrane lipid asymmetry maintenance protein MlaD compare
PFLU_RS31185 -1.1 -3.6 hypothetical protein compare
PFLU_RS18655 -1.1 -2.0 NADH-quinone oxidoreductase subunit J compare
PFLU_RS21300 -1.1 -3.4 cysteine hydrolase compare
PFLU_RS18665 -1.1 -3.0 NADH-quinone oxidoreductase subunit L compare
PFLU_RS06320 -1.1 -2.1 OmpH family outer membrane protein compare
PFLU_RS05780 -1.1 -6.7 helix-turn-helix transcriptional regulator compare
PFLU_RS21655 -1.1 -2.6 response regulator compare
PFLU_RS01595 -1.1 -6.5 AsmA family protein compare
PFLU_RS01965 -1.1 -1.1 ATP-dependent protease subunit HslV compare
PFLU_RS20580 -1.1 -6.2 3-isopropylmalate dehydratase large subunit compare
PFLU_RS04415 -1.1 -3.1 LPS export ABC transporter periplasmic protein LptC compare
PFLU_RS18635 -1.1 -2.5 NADH-quinone oxidoreductase subunit NuoF compare
PFLU_RS27640 -1.1 -0.9 alpha/beta fold hydrolase compare
PFLU_RS18625 -1.1 -4.8 NADH-quinone oxidoreductase subunit C/D compare
PFLU_RS11505 -1.1 -1.2 ABC transporter substrate-binding protein compare
PFLU_RS29550 -1.1 -4.8 ATP-dependent DNA helicase RecG compare
PFLU_RS28385 -1.1 -5.9 homoserine O-acetyltransferase compare
PFLU_RS18615 -1.1 -2.0 NADH-quinone oxidoreductase subunit A compare
PFLU_RS02700 -1.1 -2.5 ammonia-dependent NAD(+) synthetase compare
PFLU_RS07785 -1.1 -6.1 VacJ family lipoprotein compare
PFLU_RS24560 -1.1 -5.1 site-specific tyrosine recombinase XerD compare
PFLU_RS08655 -1.1 -1.7 heme ABC transporter permease compare
PFLU_RS04445 -1.0 -4.0 ABC transporter substrate-binding protein compare
PFLU_RS20510 -1.0 -6.5 O-succinylhomoserine sulfhydrylase compare
PFLU_RS24015 -1.0 -1.4 cold-shock protein compare
PFLU_RS26735 -1.0 -5.3 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PFLU_RS10670 -1.0 -4.0 hypothetical protein compare
PFLU_RS27370 -1.0 -5.5 anthranilate phosphoribosyltransferase compare


Specific Phenotypes

For 1 genes in this experiment

For carbon source D-Glucose in Pseudomonas fluorescens SBW25-INTG

For carbon source D-Glucose across organisms