Experiment set4IT014 for Caulobacter crescentus NA1000

Compare to:

PYE with Polymyxin B sulfate 0.005 mg/ml

200 most detrimental genes:

  gene name fitness t score description  
CCNA_03280 +4.9 39.5 pyruvate ferredoxin/flavodoxin oxidoreductase family protein compare
CCNA_01968 +4.9 10.3 pentapeptide repeats containing protein compare
CCNA_02030 +4.7 20.3 hypothetical protein compare
CCNA_02026 +4.7 20.9 hypothetical protein compare
CCNA_02028 +4.6 7.3 NTF2 superfamily protein compare
CCNA_00699 +4.4 21.7 LSU ribosomal protein L28P compare
CCNA_01730 +4.3 20.7 amidophosphoribosyltransferase compare
CCNA_03519 +4.3 14.7 PadR-family transcriptional regulator compare
CCNA_01712 +4.2 28.5 CopY/TcrY family transcriptional repressor compare
CCNA_00924 +4.2 27.9 MarR/EmrR family transcriptional regulator compare
CCNA_01220 +4.2 18.5 7-keto-8-aminopelargonate synthetase compare
CCNA_02025 +4.2 15.5 hypothetical protein compare
CCNA_02103 +4.1 21.3 hypothetical protein compare
CCNA_02416 +4.1 23.1 DNA-binding protein HU compare
CCNA_01964 +4.1 18.5 NADH dehydrogenase compare
CCNA_02289 +4.1 31.5 MarR/EmrR family transcriptional regulator compare
CCNA_03064 +4.1 32.2 PadR-family transcriptional regulator compare
CCNA_03043 +4.1 14.1 type IV pilin protein pilA compare
CCNA_03271 +4.1 32.1 methionine gamma-lyase compare
CCNA_00518 +4.1 26.6 LSU ribosomal protein L25P compare
CCNA_03252 +4.1 23.5 CopY/TcrY-family transcriptional regulator compare
CCNA_03498 +4.0 27.6 MarR-family transcriptional regulator compare
CCNA_03281 +4.0 32.9 AsnC-family transcriptional regulator compare
CCNA_02980 +4.0 27.0 tryptophan 2,3-dioxygenase compare
CCNA_01979 +3.9 20.8 LexA repressor compare
CCNA_00161 +3.9 33.1 hypothetical protein compare
CCNA_03287 +3.9 32.3 PadR-family transcriptional regulator compare
CCNA_01583 +3.9 9.0 phosphate-binding protein compare
CCNA_00756 +3.9 6.7 hypothetical protein compare
CCNA_00684 +3.9 22.8 anti-sigma factor, ChrR-family compare
CCNA_03681 +3.9 20.4 ABC transporter ATP-binding protein compare
CCNA_01094 +3.8 11.4 hypothetical protein compare
CCNA_02157 +3.8 19.1 HipB-family transcriptional regulator compare
CCNA_00162 +3.8 20.2 hypothetical protein compare
CCNA_03680 +3.8 30.5 aminopeptidase N compare
CCNA_03289 +3.7 20.5 HicB-family RNA-binding protein compare
CCNA_03379 +3.7 13.0 Cro/CI family transcriptional regulator compare
CCNA_00846 +3.7 31.4 proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase compare
CCNA_02156 +3.7 22.1 hypothetical protein compare
CCNA_00769 +3.7 16.6 TetR family transcriptional regulator compare
CCNA_01780 +3.7 22.7 exopolyphosphatase compare
CCNA_02021 +3.7 14.8 hypothetical protein compare
CCNA_03989 +3.6 29.6 MarR-family HTH transcriptional regulator / N-acyltransferase compare
CCNA_03612 +3.6 25.9 HTH XRE-family transcriptional regulator compare
CCNA_02448 +3.6 12.7 hypothetical protein compare
CCNA_03479 +3.6 21.2 MarR-family transcriptional regulator compare
CCNA_00939 +3.6 14.8 MarR-family transcriptional regulator compare
CCNA_02315 +3.6 15.7 Cro/CI-family transcriptional regulator compare
CCNA_01790 +3.6 13.5 protein translocase subunit secG compare
CCNA_00962 +3.5 22.6 MarR-family transcriptional regulator compare
CCNA_01217 +3.5 26.2 phosphatidylglycerophosphate synthase compare
CCNA_02225 +3.5 18.8 ArsR family/SAM-dependent transcriptional regulator compare
CCNA_01526 +3.5 20.4 flagellar biosynthesis regulatory protein flaF compare
CCNA_01722 +3.5 3.1 hypothetical protein compare
CCNA_01453 +3.5 16.4 electron transport complex I subunit, NADH-ubiquinone oxidoreductase compare
CCNA_02957 +3.5 11.8 ArsR-family transcriptional regulator compare
CCNA_01814 +3.5 25.9 nitrogen regulation protein ntrB compare
CCNA_03325 +3.5 15.6 hypothetical protein compare
CCNA_01840 +3.4 26.1 MerR-family transcriptional regulator compare
CCNA_03030 +3.4 20.1 cytochrome c2 compare
CCNA_02617 +3.4 27.7 histidinol-phosphate aminotransferase compare
CCNA_01851 +3.4 28.2 quinol cytochrome oxidase polypeptide II compare
CCNA_01573 +3.4 15.0 ArsR-family transcriptional regulator compare
CCNA_01242 +3.4 18.8 amino acid permease compare
CCNA_00505 +3.4 21.5 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
CCNA_02328 +3.4 3.0 cell cycle regulatory protein GcrA compare
CCNA_02866 +3.4 12.1 hypothetical protein compare
CCNA_01063 +3.3 14.7 UDP-perosamine 4-acetyl transferase compare
CCNA_01739 +3.3 18.6 LSU ribosomal protein L9P compare
CCNA_01624 +3.3 9.0 orotate phosphoribosyltransferase compare
CCNA_03689 +3.3 24.3 alanine dehydrogenase compare
CCNA_01684 +3.3 19.6 phenylalanine-4-hydroxylase compare
CCNA_00210 +3.3 27.5 TonB-dependent receptor compare
CCNA_02447 +3.3 12.6 PspA/IM30 family regulatory protein compare
CCNA_01221 +3.3 5.9 acyl carrier protein compare
CCNA_03949 +3.3 18.3 hypothetical protein compare
CCNA_00521 +3.3 6.8 antitoxin protein compare
CCNA_02616 +3.3 24.3 4-hydroxyphenylpyruvate dioxygenase compare
CCNA_03951 +3.3 13.4 hypothetical protein compare
CCNA_00292 +3.3 7.7 phosphate transport system permease protein pstC compare
CCNA_01815 +3.2 22.5 nitrogen assimilation regulatory protein NtrC compare
CCNA_02910 +3.2 28.1 TonB-dependent receptor compare
CCNA_03961 +3.2 12.0 hypothetical protein compare
CCNA_02575 +3.2 11.8 hypothetical protein compare
CCNA_03391 +3.2 17.3 Cro/CI family transcriptional regulator compare
CCNA_01763 +3.2 16.8 multifunctional aminopeptidase compare
CCNA_03893 +3.2 6.3 hypothetical protein compare
CCNA_01186 +3.2 17.2 hypothetical protein compare
CCNA_01931 +3.2 22.7 TetR-family transcriptional regulator compare
CCNA_01008 +3.2 24.0 urocanate hydratase compare
CCNA_01913 +3.2 20.8 MarR-family transcriptional regulator compare
CCNA_00149 +3.2 7.1 Cro/CI-family transcriptional regulator compare
CCNA_03123 +3.1 18.2 ArsR-family transcriptional regulator compare
CCNA_01942 +3.1 17.6 Rrf2 family protein compare
CCNA_02000 +3.1 2.7 SSU ribosomal protein S2P compare
CCNA_02073 +3.1 11.0 cupin domain transcriptional regulator compare
CCNA_02316 +3.1 15.6 hypothetical protein compare
CCNA_02553 +3.1 21.7 ATP-dependent clp protease ATP-binding subunit ClpA compare
CCNA_01802 +3.1 10.3 hypothetical protein compare
CCNA_01223 +3.1 19.6 acyl-CoA synthetase compare
CCNA_02591 +3.1 9.8 glutaredoxin compare
CCNA_03464 +3.1 9.8 glycine cleavage system H protein compare
CCNA_01058 +3.1 17.4 helix-turn-helix transcriptional regulator compare
CCNA_01848 +3.0 18.4 quinol cytochrome oxidase polypeptide IV compare
CCNA_01849 +3.0 21.9 quinol cytochrome oxidase polypeptide III compare
CCNA_00954 +3.0 22.4 AAA-family response regulator flbD compare
CCNA_00441 +3.0 18.3 chemotaxis receiver domain protein cheYI compare
CCNA_03215 +3.0 19.1 ARO8 family aminotransferase/HTH DNA-binding protein compare
CCNA_01219 +3.0 7.5 putative cytosolic protein compare
CCNA_01218 +3.0 10.9 sphingosine kinase/diacylglycerol kinase-related protein compare
CCNA_01222 +3.0 11.9 NADH-ubiquinone oxidoreductase compare
CCNA_02619 +3.0 17.3 stomatin/prohibitin-related protein compare
CCNA_03938 +3.0 8.2 hypothetical protein compare
CCNA_03936 +3.0 11.8 hypothetical protein compare
CCNA_00163 +3.0 19.2 exopolysaccharide transport family protein compare
CCNA_00834 +3.0 14.6 flagellin FljM compare
CCNA_02576 +2.9 18.9 phosphoribosylamidoimidazole-succinocarboxamide synthase compare
CCNA_01801 +2.9 14.5 hypothetical protein compare
CCNA_00438 +2.9 13.4 hypothetical protein compare
CCNA_03863 +2.9 10.5 hypothetical protein compare
CCNA_01059 +2.9 9.1 S-layer protein rsaA compare
CCNA_02646 +2.9 5.1 cell division protein MraZ compare
CCNA_03420 +2.9 11.1 hypothetical protein compare
CCNA_01804 +2.9 16.5 glutathione peroxidase compare
CCNA_00803 +2.9 12.6 chemotaxis protein cheW compare
CCNA_00079 +2.9 12.1 MerR-family transcriptional regulator compare
CCNA_00031 +2.9 16.4 toxin protein VapC compare
CCNA_03129 +2.8 16.0 peptidoglycan-specific endopeptidase, M23 family compare
CCNA_00440 +2.8 8.2 STAS domain protein compare
CCNA_01742 +2.8 15.9 hypothetical protein compare
CCNA_00895 +2.8 16.7 hypothetical protein compare
CCNA_00920 +2.8 9.6 hypothetical protein compare
CCNA_03372 +2.8 12.6 bacterioferritin-associated ferredoxin compare
CCNA_01593 +2.8 15.6 Xaa-pro aminopeptidase compare
CCNA_03089 +2.8 18.4 hypothetical protein compare
CCNA_R0037 +2.8 6.4 tRNA-Glu compare
CCNA_00296 +2.8 14.8 phosphate regulon response regulator PhoB compare
CCNA_03062 +2.8 17.5 cell wall hydrolase family protein compare
CCNA_02339 +2.8 16.6 methyltransferase compare
CCNA_00400 +2.8 16.2 MarR/EmrR-family transcriptional regulator compare
CCNA_00375 +2.8 12.6 hypothetical protein compare
CCNA_02367 +2.8 17.8 CelR-family transcriptional regulator compare
CCNA_01235 +2.8 12.4 AcrR-family transcriptional regulator compare
CCNA_00944 +2.8 15.9 flagellar hook length determination protein compare
CCNA_01226 +2.8 9.8 hypothetical protein compare
CCNA_00168 +2.8 21.3 polysaccharide export protein compare
CCNA_00299 +2.8 14.1 phosphoribosylamine--glycine ligase compare
CCNA_03876 +2.7 2.6 transcription termination factor rho compare
CCNA_00945 +2.7 14.3 chemotaxis protein MotD compare
CCNA_03524 +2.7 15.6 di-/tripeptide transporter compare
CCNA_02467 +2.7 15.3 polyisoprenylphosphate hexose-1-phosphotransferase pssZ compare
CCNA_01850 +2.7 20.2 quinol cytochrome oxidase polypeptide I compare
CCNA_01212 +2.7 16.1 dATP pyrophosphohydrolase compare
CCNA_02297 +2.7 11.9 hypoxanthine-guanine phosphoribosyltransferase compare
CCNA_00148 +2.7 11.0 hypothetical protein compare
CCNA_00950 +2.7 19.5 flagellar M-ring protein FliF compare
CCNA_00947 +2.7 21.8 flagellar hook protein FlgE compare
CCNA_00215 +2.7 14.2 SapC surface layer protein compare
CCNA_01678 +2.7 13.4 arginine N-succinyltransferase, beta chain compare
CCNA_01020 +2.7 16.0 LacI-family transcriptional regulator compare
CCNA_02042 +2.7 17.4 trigger factor chaperone compare
CCNA_01528 +2.7 15.9 flagellin fljK compare
CCNA_02663 +2.6 6.8 DnaK suppressor protein DksA compare
CCNA_02419 +2.6 11.6 TonB1 protein compare
CCNA_00368 +2.6 15.3 phosphonates transport system permease protein phnE compare
CCNA_02969 +2.6 14.2 TetR-family transcriptional regulator compare
CCNA_03964 +2.6 7.4 hypothetical protein compare
CCNA_02036 +2.6 5.6 DNA-binding protein HU compare
CCNA_00352 +2.6 15.2 integral membrane protein compare
CCNA_03805 +2.6 18.1 PadR-family transcriptional regulator compare
CCNA_03808 +2.6 15.6 organic solvent resistance transport system Ttg2C protein compare
CCNA_03718 +2.6 16.7 NADH-ubiquinone oxidoreductase subunit compare
CCNA_02933 +2.6 18.2 aminopeptidase compare
CCNA_01361 +2.6 12.3 PepSY superfamily protein compare
CCNA_01279 +2.6 10.4 inorganic polyphosphate/ATP-NAD kinase compare
CCNA_03622 +2.6 15.7 beta-lactamase repressor compare
CCNA_02976 +2.6 11.5 MCP-signal associated domain protein compare
CCNA_00675 +2.5 12.6 VapC-like PIN domain ribonuclease compare
CCNA_02567 +2.5 16.5 sensory transduction histidine kinase pleC compare
CCNA_00443 +2.5 13.1 chemotaxis protein cheW compare
CCNA_00447 +2.5 12.8 chemotaxis protein cheD compare
CCNA_03688 +2.5 15.7 AsnC-family transcriptional regulator compare
CCNA_00999 +2.5 12.2 PAS-family motility and cell cycle regulatory protein MopJ compare
CCNA_00919 +2.5 8.4 hypothetical protein compare
CCNA_03619 +2.5 16.2 zinc metalloprotease compare
CCNA_00207 +2.5 13.2 succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B compare
CCNA_02164 +2.5 9.9 glutamate dehydrogenase/leucine dehydrogenase compare
CCNA_02728 +2.5 12.3 hypothetical protein compare
CCNA_00448 +2.5 16.7 cheU protein compare
CCNA_03722 +2.5 21.8 glutamate synthase (NADPH) large chain GltB compare
CCNA_01393 +2.5 15.6 soluble lytic murein transglycosylase compare
CCNA_01751 +2.5 8.7 aminodeoxychorismate lyase compare
CCNA_02395 +2.5 9.7 hypothetical protein compare
CCNA_02846 +2.5 16.3 DegP/HtrA-family serine protease compare
CCNA_01918 +2.5 14.0 cyclic di-GMP effector protein PopA compare
CCNA_00781 +2.5 15.9 two-component receiver protein CpdR compare
CCNA_01655 +2.5 12.2 cyclophilin-type peptidylprolyl cis-trans isomerase compare
CCNA_02341 +2.4 12.0 small heat shock protein compare
CCNA_01926 +2.4 10.0 GGDEF diguanylate cyclase DgcB compare
CCNA_00946 +2.4 14.2 Basal-body rod modification protein FlgD compare


Specific Phenotypes

For 21 genes in this experiment

For stress Polymyxin B sulfate in Caulobacter crescentus NA1000

For stress Polymyxin B sulfate across organisms