Experiment set4IT013 for Pseudomonas fluorescens SBW25-INTG

Compare to:

D-Glucose carbon source; with MOPS

200 most important genes:

  gene name fitness t score description  
PFLU_RS28695 -5.2 -3.6 phosphoglycerate dehydrogenase compare
PFLU_RS02490 -4.5 -12.4 phosphoserine phosphatase SerB compare
PFLU_RS02790 -4.4 -2.6 TetR family transcriptional regulator compare
PFLU_RS01645 -3.9 -15.3 S41 family peptidase compare
PFLU_RS22595 -3.6 -2.5 OmpA family protein compare
PFLU_RS18505 -3.6 -11.3 uroporphyrinogen-III C-methyltransferase compare
PFLU_RS04715 -3.6 -8.0 D-alanine--D-alanine ligase compare
PFLU_RS22740 -3.6 -5.9 phosphoadenylyl-sulfate reductase compare
PFLU_RS22105 -3.6 -5.9 cysteine synthase CysM compare
PFLU_RS23070 -3.4 -1.7 50S ribosomal protein L32 compare
PFLU_RS25760 -3.4 -14.7 glucose-6-phosphate isomerase compare
PFLU_RS20690 -3.3 -5.0 hypothetical protein compare
PFLU_RS08165 -3.3 -2.3 acyl carrier protein compare
PFLU_RS23065 -3.3 -12.1 phosphate acyltransferase PlsX compare
PFLU_RS08160 -3.3 -8.2 sugar transferase compare
PFLU_RS24695 -3.3 -1.6 PTS glucose transporter subunit IIB compare
PFLU_RS29515 -3.3 -11.7 RidA family protein compare
PFLU_RS24125 -3.2 -8.8 cold-shock protein compare
PFLU_RS00535 -3.2 -3.7 DUF1127 domain-containing protein compare
PFLU_RS12980 -3.2 -11.4 nitrite/sulfite reductase compare
PFLU_RS03645 -3.2 -13.4 tetratricopeptide repeat protein compare
PFLU_RS23585 -3.2 -9.9 GntP family permease compare
PFLU_RS19935 -3.2 -3.1 type II secretion system protein GspF compare
PFLU_RS29880 -3.1 -13.6 acetyl-CoA carboxylase biotin carboxylase subunit compare
PFLU_RS28535 -3.1 -17.2 dihydroxy-acid dehydratase compare
PFLU_RS09055 -3.1 -3.0 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
PFLU_RS23590 -3.1 -2.9 gluconokinase compare
PFLU_RS21495 -3.1 -2.1 TlpA family protein disulfide reductase compare
PFLU_RS25750 -3.0 -7.5 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PFLU_RS29875 -3.0 -15.0 oxaloacetate decarboxylase subunit alpha compare
PFLU_RS03970 -3.0 -10.0 carboxylating nicotinate-nucleotide diphosphorylase compare
PFLU_RS20520 -3.0 -11.4 colicin V production protein CvpA compare
PFLU_RS00195 -3.0 -2.9 dodecin domain-containing protein compare
PFLU_RS23305 -2.9 -11.9 arginine N-succinyltransferase compare
PFLU_RS22095 -2.8 -18.4 GTP diphosphokinase compare
PFLU_RS25735 -2.8 -9.2 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS01605 -2.8 -10.1 imidazoleglycerol-phosphate dehydratase HisB compare
PFLU_RS31830 -2.8 -1.4 hypothetical protein compare
PFLU_RS28965 -2.8 -11.4 5-formyltetrahydrofolate cyclo-ligase compare
PFLU_RS29095 -2.8 -18.8 polyphosphate kinase 1 compare
PFLU_RS01895 -2.8 -7.5 phosphoribosyl-ATP diphosphatase compare
PFLU_RS28315 -2.8 -1.3 response regulator compare
PFLU_RS23725 -2.7 -12.9 glucose-6-phosphate dehydrogenase compare
PFLU_RS24330 -2.7 -7.9 phosphogluconate dehydratase compare
PFLU_RS29885 -2.7 -9.7 LysR family transcriptional regulator compare
PFLU_RS02980 -2.7 -2.8 precorrin-8X methylmutase compare
PFLU_RS08180 -2.7 -5.4 ketoacyl-ACP synthase III compare
PFLU_RS28655 -2.7 -15.2 HAD family hydrolase compare
PFLU_RS28165 -2.7 -12.6 methylenetetrahydrofolate reductase [NAD(P)H] compare
PFLU_RS06055 -2.7 -1.5 chemotaxis response regulator protein-glutamate methylesterase compare
PFLU_RS12975 -2.6 -7.0 DUF934 domain-containing protein compare
PFLU_RS27650 -2.6 -12.9 biotin synthase BioB compare
PFLU_RS00415 -2.6 -1.8 thiol:disulfide interchange protein DsbA/DsbL compare
PFLU_RS04070 -2.6 -6.2 peptide chain release factor 3 compare
PFLU_RS13035 -2.5 -4.2 cobalamin biosynthesis protein CobW compare
PFLU_RS20515 -2.5 -4.1 amidophosphoribosyltransferase compare
PFLU_RS23185 -2.5 -12.3 protein-glutamate O-methyltransferase CheR compare
PFLU_RS02365 -2.5 -11.6 glycosyltransferase compare
PFLU_RS09535 -2.4 -1.6 TIGR03750 family conjugal transfer protein compare
PFLU_RS01620 -2.4 -9.0 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
PFLU_RS00870 -2.4 -1.7 hypothetical protein compare
PFLU_RS25640 -2.4 -12.1 ketol-acid reductoisomerase compare
PFLU_RS00175 -2.4 -9.8 tryptophan synthase subunit alpha compare
PFLU_RS05210 -2.4 -2.7 HU family DNA-binding protein compare
PFLU_RS04660 -2.4 -7.1 division/cell wall cluster transcriptional repressor MraZ compare
PFLU_RS24025 -2.3 -9.8 quinolinate synthase NadA compare
PFLU_RS24085 -2.3 -3.5 Holliday junction branch migration DNA helicase RuvB compare
PFLU_RS27635 -2.3 -9.2 malonyl-ACP O-methyltransferase BioC compare
PFLU_RS27640 -2.3 -1.4 alpha/beta fold hydrolase compare
PFLU_RS18885 -2.3 -2.5 peptidyl-prolyl cis-trans isomerase compare
PFLU_RS18615 -2.3 -2.9 NADH-quinone oxidoreductase subunit A compare
PFLU_RS02050 -2.2 -12.1 NAD(P)-binding protein compare
PFLU_RS28195 -2.2 -11.6 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
PFLU_RS30165 -2.2 -9.7 ParA family protein compare
PFLU_RS27645 -2.2 -10.3 8-amino-7-oxononanoate synthase compare
PFLU_RS25360 -2.1 -7.0 glutamate 5-kinase compare
PFLU_RS27630 -2.1 -5.3 dethiobiotin synthase compare
PFLU_RS31710 -2.1 -2.9 hypothetical protein compare
PFLU_RS25755 -2.1 -4.7 pantoate--beta-alanine ligase compare
PFLU_RS31290 -2.1 -1.8 EamA family transporter compare
PFLU_RS26545 -2.1 -8.4 sel1 repeat family protein compare
PFLU_RS28645 -2.1 -10.2 phosphoenolpyruvate--protein phosphotransferase compare
PFLU_RS28650 -2.1 -5.4 RNA pyrophosphohydrolase compare
PFLU_RS24095 -2.0 -3.0 crossover junction endodeoxyribonuclease RuvC compare
PFLU_RS01625 -2.0 -3.0 imidazole glycerol phosphate synthase subunit HisF compare
PFLU_RS30160 -2.0 -2.8 ParB/RepB/Spo0J family partition protein compare
PFLU_RS23310 -2.0 -8.2 arginine/ornithine succinyltransferase subunit alpha compare
PFLU_RS01485 -2.0 -10.2 cellulase compare
PFLU_RS24335 -2.0 -10.2 type I glyceraldehyde-3-phosphate dehydrogenase compare
PFLU_RS04430 -2.0 -8.4 ATP-binding cassette domain-containing protein compare
PFLU_RS01610 -1.9 -8.9 imidazole glycerol phosphate synthase subunit HisH compare
PFLU_RS25645 -1.8 -1.2 acetolactate synthase small subunit compare
PFLU_RS29275 -1.8 -5.3 DUF484 family protein compare
PFLU_RS18625 -1.8 -6.2 NADH-quinone oxidoreductase subunit C/D compare
PFLU_RS26595 -1.7 -2.3 lipoprotein compare
PFLU_RS03770 -1.7 -8.5 sulfate adenylyltransferase subunit CysN compare
PFLU_RS20870 -1.7 -2.6 hypothetical protein compare
PFLU_RS04465 -1.7 -5.5 ATP phosphoribosyltransferase compare
PFLU_RS31630 -1.7 -2.9 hypothetical protein compare
PFLU_RS18655 -1.7 -2.6 NADH-quinone oxidoreductase subunit J compare
PFLU_RS00180 -1.7 -4.8 tryptophan synthase subunit beta compare
PFLU_RS20730 -1.7 -2.0 hypothetical protein compare
PFLU_RS06320 -1.6 -2.6 OmpH family outer membrane protein compare
PFLU_RS18530 -1.6 -3.7 DNA translocase FtsK compare
PFLU_RS30525 -1.6 -6.6 SDR family oxidoreductase compare
PFLU_RS07225 -1.6 -9.3 L-aspartate oxidase compare
PFLU_RS30520 -1.6 -4.4 ketoacyl-ACP synthase III compare
PFLU_RS27380 -1.6 -8.2 anthranilate synthase component I compare
PFLU_RS25730 -1.6 -10.8 PAS domain S-box protein compare
PFLU_RS13540 -1.6 -4.3 3-phosphoshikimate 1-carboxyvinyltransferase compare
PFLU_RS04470 -1.6 -8.0 histidinol dehydrogenase compare
PFLU_RS01960 -1.6 -1.8 ATP-dependent protease ATPase subunit HslU compare
PFLU_RS16025 -1.6 -2.2 flavin-dependent monooxygenase compare
PFLU_RS30530 -1.6 -5.0 acetyltransferase compare
PFLU_RS02045 -1.6 -12.0 glutamate synthase large subunit compare
PFLU_RS28310 -1.6 -1.7 response regulator compare
PFLU_RS24090 -1.6 -4.0 Holliday junction branch migration protein RuvA compare
PFLU_RS26290 -1.6 -0.9 2Fe-2S iron-sulfur cluster binding domain-containing protein compare
PFLU_RS00310 -1.6 -1.4 twin transmembrane helix small protein compare
PFLU_RS29290 -1.6 -3.5 hypothetical protein compare
PFLU_RS07805 -1.6 -9.9 transaldolase compare
PFLU_RS12660 -1.5 -4.5 hypothetical protein compare
PFLU_RS07785 -1.5 -8.5 VacJ family lipoprotein compare
PFLU_RS21060 -1.5 -4.0 TetR/AcrR family transcriptional regulator compare
PFLU_RS29280 -1.5 -5.1 tyrosine recombinase XerC compare
PFLU_RS25585 -1.5 -1.7 exodeoxyribonuclease V subunit alpha compare
PFLU_RS30610 -1.5 -3.5 IS3 family transposase compare
PFLU_RS18645 -1.5 -2.5 NADH-quinone oxidoreductase subunit NuoH compare
PFLU_RS07275 -1.5 -2.8 4-hydroxy-tetrahydrodipicolinate synthase compare
PFLU_RS01900 -1.5 -5.2 phosphoribosyl-AMP cyclohydrolase compare
PFLU_RS21300 -1.5 -4.6 cysteine hydrolase compare
PFLU_RS30590 -1.5 -1.2 hypothetical protein compare
PFLU_RS28320 -1.5 -1.7 glutathione synthase compare
PFLU_RS11980 -1.5 -5.6 precorrin-6A synthase (deacetylating) compare
PFLU_RS24485 -1.5 -6.2 hypothetical protein compare
PFLU_RS04325 -1.4 -9.0 ribonuclease G compare
PFLU_RS26770 -1.4 -8.3 DedA family protein compare
PFLU_RS03765 -1.4 -6.6 sulfate adenylyltransferase subunit CysD compare
PFLU_RS28390 -1.4 -5.4 methionine biosynthesis protein MetW compare
PFLU_RS06555 -1.4 -7.5 OmpA family protein compare
PFLU_RS29400 -1.4 -1.6 DUF1127 domain-containing protein compare
PFLU_RS25225 -1.4 -5.5 disulfide bond formation protein B compare
PFLU_RS29550 -1.4 -6.1 ATP-dependent DNA helicase RecG compare
PFLU_RS04435 -1.4 -4.8 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
PFLU_RS21645 -1.4 -6.0 chemotaxis protein CheA compare
PFLU_RS24255 -1.4 -6.9 pyruvate kinase compare
PFLU_RS29745 -1.3 -3.2 response regulator compare
PFLU_RS29490 -1.3 -5.5 ribonuclease PH compare
PFLU_RS05250 -1.3 -3.5 elongation factor 4 compare
PFLU_RS31065 -1.3 -1.7 helix-turn-helix domain-containing protein compare
PFLU_RS05630 -1.3 -1.4 amino acid ABC transporter ATP-binding protein compare
PFLU_RS01615 -1.3 -2.9 DUF2164 domain-containing protein compare
PFLU_RS19175 -1.3 -5.4 trigger factor compare
PFLU_RS02590 -1.3 -5.0 ATP phosphoribosyltransferase regulatory subunit compare
PFLU_RS31475 -1.3 -1.8 hypothetical protein compare
PFLU_RS03575 -1.3 -1.2 hypothetical protein compare
PFLU_RS24205 -1.3 -1.7 DNA binding protein compare
PFLU_RS04440 -1.3 -6.2 outer membrane lipid asymmetry maintenance protein MlaD compare
PFLU_RS18635 -1.3 -2.8 NADH-quinone oxidoreductase subunit NuoF compare
PFLU_RS21615 -1.3 -5.0 chemotaxis protein CheW compare
PFLU_RS18670 -1.2 -1.7 NADH-quinone oxidoreductase subunit M compare
PFLU_RS02870 -1.2 -3.1 N-acetyltransferase compare
PFLU_RS24590 -1.2 -2.0 cytochrome c assembly protein compare
PFLU_RS01595 -1.2 -6.6 AsmA family protein compare
PFLU_RS10655 -1.2 -2.5 RcnB family protein compare
PFLU_RS22725 -1.2 -2.4 transcriptional regulator compare
PFLU_RS09980 -1.2 -8.5 peptidase S41 compare
PFLU_RS06420 -1.2 -5.3 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
PFLU_RS10595 -1.2 -2.8 hypothetical protein compare
PFLU_RS27620 -1.2 -8.2 acyl-CoA dehydrogenase compare
PFLU_RS24015 -1.2 -1.6 cold-shock protein compare
PFLU_RS18620 -1.2 -4.2 NADH-quinone oxidoreductase subunit B compare
PFLU_RS05885 -1.2 -3.9 recombinase RecA compare
PFLU_RS18350 -1.2 -2.3 GIY-YIG nuclease family protein compare
PFLU_RS14520 -1.2 -2.6 hypothetical protein compare
PFLU_RS13240 -1.2 -4.6 D-glycerate dehydrogenase compare
PFLU_RS02700 -1.2 -2.8 ammonia-dependent NAD(+) synthetase compare
PFLU_RS13665 -1.2 -1.1 MarR family transcriptional regulator compare
PFLU_RS05105 -1.2 -2.4 tetratricopeptide repeat protein compare
PFLU_RS06870 -1.2 -6.0 GNAT family N-acetyltransferase compare
PFLU_RS17545 -1.2 -0.8 DUF465 domain-containing protein compare
PFLU_RS28690 -1.2 -6.3 FAD-binding oxidoreductase compare
PFLU_RS07650 -1.2 -6.5 fatty acid oxidation complex subunit alpha FadB compare
PFLU_RS24160 -1.2 -4.7 HAMP domain-containing protein compare
PFLU_RS13045 -1.1 -4.1 AAA domain-containing protein compare
PFLU_RS04445 -1.1 -3.8 ABC transporter substrate-binding protein compare
PFLU_RS20580 -1.1 -5.8 3-isopropylmalate dehydratase large subunit compare
PFLU_RS31100 -1.1 -2.3 preprotein translocase subunit SecG compare
PFLU_RS02180 -1.1 -0.9 thioredoxin TrxC compare
PFLU_RS31275 -1.1 -1.2 hypothetical protein compare
PFLU_RS16390 -1.1 -1.4 DUF411 domain-containing protein compare
PFLU_RS01750 -1.1 -2.4 hypothetical protein compare
PFLU_RS10355 -1.1 -2.0 DeoR family transcriptional regulator compare
PFLU_RS04150 -1.1 -2.6 DUF1043 family protein compare
PFLU_RS08505 -1.1 -3.9 protease HtpX compare
PFLU_RS11830 -1.1 -1.5 hypothetical protein compare
PFLU_RS07215 -1.1 -4.0 hypothetical protein compare
PFLU_RS02625 -1.1 -6.8 ribonuclease R compare
PFLU_RS07600 -1.1 -2.6 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM compare
PFLU_RS25815 -1.1 -0.8 transcription termination/antitermination protein NusA compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens SBW25-INTG in carbon source experiments

For carbon source D-Glucose across organisms