Experiment set4IT012 for Methanococcus maripaludis S2

Compare to:

H2 deepwell vitamin and casamino acid FREE

200 most important genes:

  gene name fitness t score description  
MMP_RS07005 -4.8 -0.8 4Fe-4S binding protein compare
MMP_RS01005 -3.7 -1.7 riboflavin synthase compare
MMP_RS07345 -3.6 -6.7 glycine synthesis protein GlyXL (from data) compare
MMP_RS08300 -3.3 -1.3 metal-sulfur cluster assembly factor compare
MMP_RS03475 -3.3 -0.8 hypothetical protein compare
MMP_RS07735 -3.1 -1.0 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha compare
MMP_RS05500 -3.0 -10.9 2-isopropylmalate synthase compare
MMP_RS03435 -3.0 -2.2 ketol-acid reductoisomerase compare
MMP_RS04605 -2.9 -5.1 cobalt ECF transporter T component CbiQ compare
MMP_RS06840 -2.9 -1.2 DNA-directed RNA polymerase subunit N compare
MMP_RS06730 -2.9 -2.4 phosphopantothenate/pantothenate synthetase compare
MMP_RS04615 -2.8 -5.0 PDGLE domain-containing protein compare
MMP_RS03315 -2.8 -1.6 ferrous iron transport protein A compare
MMP_RS07845 -2.7 -3.4 LL-diaminopimelate aminotransferase compare
MMP_RS03035 -2.7 -4.7 4-hydroxy-tetrahydrodipicolinate synthase compare
MMP_RS02195 -2.6 -5.1 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-methylthiotransferase compare
MMP_RS02240 -2.6 -3.5 methanogenesis marker 7 protein compare
MMP_RS09020 -2.6 -2.0 hypothetical protein compare
MMP_RS06625 -2.5 -2.5 DNA primase compare
MMP_RS02135 -2.4 -7.1 DUF5612 domain-containing protein compare
MMP_RS03450 -2.4 -3.0 glycine synthesis protein GlyXS (from data) compare
MMP_RS01175 -2.4 -5.0 triphosphoribosyl-dephospho-CoA synthase compare
MMP_RS06355 -2.4 -2.4 molybdenum cofactor biosynthesis protein MoaE compare
MMP_RS05555 -2.4 -1.6 DUF4040 domain-containing protein compare
MMP_RS05515 -2.4 -7.9 cyclic pyranopterin monophosphate synthase MoaC compare
MMP_RS01455 -2.4 -7.9 nickel pincer cofactor biosynthesis protein LarC compare
MMP_RS03015 -2.4 -11.8 GTP 3' 8-cyclase MoaA compare
MMP_RS05265 -2.3 -3.1 2-isopropylmalate synthase compare
MMP_RS07635 -2.3 -7.9 MogA/MoaB family molybdenum cofactor biosynthesis protein compare
MMP_RS01545 -2.3 -1.3 CBS domain-containing protein compare
MMP_RS06925 -2.3 -2.9 ribonuclease VapC4 compare
MMP_RS00130 -2.3 -1.5 nickel-responsive transcriptional regulator NikR compare
MMP_RS01225 -2.3 -4.4 DUF5379 domain-containing protein compare
MMP_RS01700 -2.3 -0.9 dihydroxy-acid dehydratase compare
MMP_RS06270 -2.3 -6.0 TIGR00300 family protein compare
MMP_RS05930 -2.3 -2.7 3-isopropylmalate dehydratase large subunit compare
MMP_RS05920 -2.2 -0.7 50S ribosomal protein L37e compare
MMP_RS06370 -2.2 -5.9 biotin synthase BioB compare
MMP_RS04500 -2.1 -14.3 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
MMP_RS08095 -2.1 -8.9 dethiobiotin synthase compare
MMP_RS04620 -2.1 -13.7 cobalt transporter CbiM compare
MMP_RS04215 -2.1 -7.7 nickel pincer cofactor biosynthesis protein LarB compare
MMP_RS05425 -2.1 -6.3 monovalent cation/H+ antiporter complex subunit F compare
MMP_RS06375 -2.1 -7.2 ATP-dependent sacrificial sulfur transferase LarE compare
MMP_RS00750 -2.1 -2.5 fumarate hydratase compare
MMP_RS06350 -2.1 -7.3 HesA/MoeB/ThiF family protein compare
MMP_RS08105 -2.0 -8.3 6-carboxyhexanoate--CoA ligase compare
MMP_RS07555 -2.0 -0.8 monovalent cation/H+ antiporter subunit E compare
MMP_RS07630 -2.0 -1.6 ATP-binding cassette domain-containing protein compare
MMP_RS06120 -2.0 -2.2 UPF0147 family protein compare
MMP_RS03600 -1.9 -2.4 triose-phosphate isomerase compare
MMP_RS05845 -1.9 -2.1 tRNA-intron lyase compare
MMP_RS01960 -1.9 -0.7 hypothetical protein compare
MMP_RS08745 -1.9 -7.2 CDP-2 3-bis-(O-geranylgeranyl)-sn-glycerol synthase compare
MMP_RS06895 -1.9 -1.7 selenocysteine-specific translation elongation factor compare
MMP_RS07185 -1.9 -10.2 pyridoxal phosphate-dependent aminotransferase compare
MMP_RS06400 -1.9 -1.9 4Fe-4S binding protein compare
MMP_RS01020 -1.8 -1.1 3 4-dihydroxy-2-butanone-4-phosphate synthase compare
MMP_RS06285 -1.8 -2.4 precorrin-6Y C5 15-methyltransferase (decarboxylating) subunit CbiT compare
MMP_RS07575 -1.8 -4.5 RNA ligase partner protein compare
MMP_RS03390 -1.8 -6.4 malate dehydrogenase compare
MMP_RS08330 -1.8 -5.6 NADH-quinone oxidoreductase subunit H compare
MMP_RS08720 -1.8 -1.6 4Fe-4S binding protein compare
MMP_RS08635 -1.7 -2.0 UbiA family prenyltransferase compare
MMP_RS07645 -1.7 -5.5 aldehyde dehydrogenase family protein compare
MMP_RS07755 -1.7 -1.2 DUF555 domain-containing protein compare
MMP_RS00695 -1.7 -0.9 biotin--[acetyl-CoA-carboxylase] ligase compare
MMP_RS04790 -1.7 -10.0 4-hydroxy-tetrahydrodipicolinate reductase compare
MMP_RS08100 -1.7 -7.1 8-amino-7-oxononanoate synthase compare
MMP_RS03250 -1.7 -4.7 MJ1244 family protein compare
MMP_RS00110 -1.7 -3.0 hypothetical protein compare
MMP_RS06105 -1.6 -8.3 hydrogenase maturation peptidase HycI compare
MMP_RS03445 -1.6 -1.0 methanogenesis marker 17 protein compare
MMP_RS07750 -1.6 -5.0 DUF357 domain-containing protein compare
MMP_RS06865 -1.6 -2.2 HypC/HybG/HupF family hydrogenase formation chaperone compare
MMP_RS02235 -1.6 -9.7 CBS domain-containing protein compare
MMP_RS02885 -1.6 -11.5 molybdopterin biosynthesis protein compare
MMP_RS06630 -1.6 -1.1 UPF0058 family protein compare
MMP_RS01265 -1.6 -1.8 hypothetical protein compare
MMP_RS00305 -1.6 -1.7 phosphoribosyl-ATP diphosphatase compare
MMP_RS02010 -1.6 -7.8 PHP domain-containing protein compare
MMP_RS02355 -1.6 -2.9 30S ribosomal protein S27ae compare
MMP_RS04775 -1.6 -3.5 adenosylhomocysteinase compare
MMP_RS03700 -1.5 -7.8 sodium:proton antiporter compare
MMP_RS06130 -1.5 -2.9 peptidylprolyl isomerase compare
MMP_RS06340 -1.5 -7.4 phosphoadenosine phosphosulfate reductase family protein compare
MMP_RS00735 -1.5 -3.9 5 10-methenyltetrahydromethanopterin hydrogenase compare
MMP_RS03025 -1.5 -4.5 molybdenum cofactor guanylyltransferase compare
MMP_RS06295 -1.5 -5.7 methanogenesis marker 14 protein compare
MMP_RS01500 -1.5 -2.3 CBS domain-containing protein compare
MMP_RS01610 -1.5 -3.2 hypothetical protein compare
MMP_RS02900 -1.4 -0.6 imidazoleglycerol-phosphate dehydratase HisB compare
MMP_RS07730 -1.4 -1.7 pyruvate synthase subunit beta compare
MMP_RS03580 -1.4 -2.7 signal recognition particle-docking protein FtsY compare
MMP_RS08320 -1.4 -5.0 molybdopterin molybdotransferase MoeA compare
MMP_RS05540 -1.4 -3.3 hypothetical protein compare
MMP_RS01220 -1.4 -6.6 hypothetical protein compare
MMP_RS06230 -1.4 -2.5 helix-turn-helix domain-containing protein compare
MMP_RS08210 -1.4 -1.8 phosphatidylglycerophosphatase A compare
MMP_RS06975 -1.4 -1.9 sulfide-dependent adenosine diphosphate thiazole synthase compare
MMP_RS00300 -1.4 -0.6 6 7-dimethyl-8-ribityllumazine synthase compare
MMP_RS02145 -1.3 -5.4 winged helix-turn-helix transcriptional regulator compare
MMP_RS02280 -1.3 -0.8 DUF211 domain-containing protein compare
MMP_RS02875 -1.3 -8.4 chorismate pyruvate-lyase family protein compare
MMP_RS01720 -1.3 -1.9 replication factor C large subunit compare
MMP_RS01755 -1.3 -1.1 DUF2097 domain-containing protein compare
MMP_RS07195 -1.3 -6.0 M20 family metallo-hydrolase compare
MMP_RS07075 -1.3 -3.7 phosphomannomutase/phosphoglucomutase compare
MMP_RS04780 -1.3 -2.8 ribonuclease P compare
MMP_RS02800 -1.3 -4.4 nucleotidyltransferase domain-containing protein compare
MMP_RS05950 -1.3 -6.4 nickel-dependent hydrogenase large subunit compare
MMP_RS07540 -1.3 -3.5 CBS domain-containing protein compare
MMP_RS01795 -1.3 -1.2 methanogenesis marker 6 protein compare
MMP_RS00900 -1.3 -1.7 50S ribosomal protein L39e compare
MMP_RS07955 -1.3 -4.0 FumA C-terminus/TtdB family hydratase beta subunit compare
MMP_RS01800 -1.2 -3.1 TIGR00303 family protein compare
MMP_RS04685 -1.2 -2.4 DUF126 domain-containing protein compare
MMP_RS07600 -1.2 -2.1 Ni-sirohydrochlorin a c-diamide synthase compare
MMP_RS07545 -1.2 -0.9 HTH domain-containing protein compare
MMP_RS05925 -1.2 -2.7 small nuclear ribonucleoprotein compare
MMP_RS07380 -1.2 -1.8 transcription elongation factor Spt5 compare
MMP_RS00810 -1.2 -5.2 topoisomerase DNA-binding C4 zinc finger domain-containing protein compare
MMP_RS03340 -1.2 -0.7 ABC transporter ATP-binding protein compare
MMP_RS01325 -1.2 -1.6 dihydroneopterin aldolase family protein compare
MMP_RS03640 -1.2 -3.2 archaeal proteasome endopeptidase complex subunit beta compare
MMP_RS03960 -1.2 -0.7 hypothetical protein compare
MMP_RS08335 -1.1 -5.2 NADH-quinone oxidoreductase subunit B family protein compare
MMP_RS03080 -1.1 -2.2 universal stress protein compare
MMP_RS04090 -1.1 -2.1 hypothetical protein compare
MMP_RS00685 -1.1 -2.3 2-phospho-L-lactate guanylyltransferase compare
MMP_RS06680 -1.1 -5.8 Coenzyme F420 hydrogenase/dehydrogenase beta subunit C-terminal domain compare
MMP_RS04875 -1.1 -4.6 energy-converting hydrogenase B subunit P compare
MMP_RS06345 -1.1 -4.9 formate dehydrogenase accessory sulfurtransferase FdhD compare
MMP_RS08820 -1.1 -3.5 hypothetical protein compare
MMP_RS01075 -1.1 -1.6 hypothetical protein compare
MMP_RS00730 -1.1 -3.3 5 10-methenyltetrahydromethanopterin hydrogenase cofactor biosynthesis protein HmdB compare
MMP_RS01830 -1.1 -1.3 tRNA-Val compare
MMP_RS05250 -1.1 -1.0 NFYB/HAP3 family transcription factor subunit compare
MMP_RS08165 -1.1 -1.8 phosphoglycerate dehydrogenase compare
MMP_RS06725 -1.1 -6.1 hypothetical protein compare
MMP_RS06700 -1.1 -5.7 hypothetical protein compare
MMP_RS03145 -1.1 -5.0 fibrillarin-like rRNA/tRNA 2'-O-methyltransferase compare
MMP_RS06475 -1.0 -3.5 FAD-dependent oxidoreductase compare
MMP_RS03140 -1.0 -6.5 hypothetical protein compare
MMP_RS07710 -1.0 -6.3 cell division protein FtsZ compare
MMP_RS02345 -1.0 -1.9 GTP-dependent dephospho-CoA kinase family protein compare
MMP_RS01240 -1.0 -1.4 7-cyano-7-deazaguanine synthase QueC compare
MMP_RS07200 -1.0 -4.7 [5-(aminomethyl)furan-3-yl]methyl phosphate kinase compare
MMP_RS08435 -1.0 -1.6 Era-like GTP-binding protein compare
MMP_RS00985 -1.0 -3.7 CDC48 family AAA ATPase compare
MMP_RS05430 -1.0 -3.8 TIGR00288 family NYN domain-containing protein compare
MMP_RS08790 -1.0 -1.2 translation initiation factor IF-2 subunit alpha compare
MMP_RS01380 -1.0 -2.5 PHP domain-containing protein compare
MMP_RS01900 -1.0 -7.2 hypothetical protein compare
MMP_RS06325 -1.0 -1.2 hypothetical protein compare
MMP_RS07350 -1.0 -1.4 preprotein translocase subunit Sec61beta compare
MMP_RS06020 -1.0 -2.5 archaeoflavoprotein AfpA compare
MMP_RS03155 -1.0 -4.0 precorrin-6A reductase compare
MMP_RS08650 -0.9 -2.1 glutamine--fructose-6-phosphate transaminase (isomerizing) compare
MMP_RS03400 -0.9 -2.0 archease compare
MMP_RS08355 -0.9 -3.7 Na(+)/H(+) antiporter subunit B compare
MMP_RS02110 -0.9 -1.6 hypothetical protein compare
MMP_RS06705 -0.9 -3.5 formate/nitrite transporter family protein compare
MMP_RS06720 -0.9 -3.3 response regulator transcription factor compare
MMP_RS08370 -0.9 -0.5 cation:proton antiporter subunit C compare
MMP_RS04585 -0.9 -4.8 AIR synthase related protein compare
MMP_RS08600 -0.9 -2.1 flagellar protein D compare
MMP_RS08345 -0.9 -5.7 4Fe-4S binding protein compare
MMP_RS05550 -0.9 -0.4 cation:proton antiporter compare
MMP_RS04850 -0.9 -6.7 UPF0254 family protein compare
MMP_RS03420 -0.9 -1.6 acetolactate synthase small subunit compare
MMP_RS01905 -0.9 -6.6 glycosyltransferase compare
MMP_RS04890 -0.9 -0.5 adenylyltransferase/cytidyltransferase family protein compare
MMP_RS04785 -0.9 -5.7 hypothetical protein compare
MMP_RS08760 -0.9 -1.7 hypothetical protein compare
MMP_RS04695 -0.9 -4.2 selenide water dikinase SelD compare
MMP_RS06930 -0.9 -5.8 MBL fold metallo-hydrolase compare
MMP_RS07420 -0.8 -2.4 metalloregulator ArsR/SmtB family transcription factor compare
MMP_RS06855 -0.8 -3.8 hypothetical protein compare
MMP_RS00120 -0.8 -3.3 LysR family transcriptional regulator compare
MMP_RS02175 -0.8 -0.5 DUF1611 domain-containing protein compare
MMP_RS08645 -0.8 -3.9 UPF0179 family protein compare
MMP_RS08460 -0.8 -1.5 proteasome-activating nucleotidase compare
MMP_RS01665 -0.8 -1.7 DUF2111 domain-containing protein compare
MMP_RS08365 -0.8 -2.1 energy conserving hydrogenase EhbF compare
MMP_RS04710 -0.8 -0.8 hypothetical protein compare
MMP_RS00720 -0.8 -3.5 metal-dependent hydrolase compare
MMP_RS08615 -0.8 -1.4 flagellar protein G compare
MMP_RS03465 -0.8 -0.8 adenine phosphoribosyltransferase compare
MMP_RS08715 -0.8 -1.0 formylmethanofuran dehydrogenase subunit B compare
MMP_RS03550 -0.8 -1.2 DUF2124 domain-containing protein compare
MMP_RS04720 -0.8 -1.7 DedA family protein compare
MMP_RS00770 -0.8 -2.8 hypothetical protein compare
MMP_RS01840 -0.7 -3.7 TIGR00289 family protein compare
MMP_RS00725 -0.7 -2.9 5 10-methenyltetrahydromethanopterin hydrogenase cofactor biosynthesis protein HmdC compare
MMP_RS08840 -0.7 -4.4 class I SAM-dependent methyltransferase compare
MMP_RS01925 -0.7 -4.6 DUF1616 domain-containing protein compare
MMP_RS06685 -0.7 -3.8 formate dehydrogenase H subunit alpha selenocysteine-containing compare
MMP_RS08830 -0.7 -2.3 GTP-binding protein compare
MMP_RS05460 -0.7 -4.6 YcaO-related McrA-glycine thioamidation protein compare


Specific Phenotypes

None in this experiment

For Methanococcus maripaludis S2 in nutrient t1 experiments

For nutrient t1 Sodium acetate across organisms