Experiment set4IT012 for Methanococcus maripaludis JJ

Compare to:

Formate N-free with 2mM Adenosine

200 most important genes:

  gene name fitness t score description  
MMJJ_RS02935 -5.7 -2.0 DNA-directed RNA polymerase subunit E'' compare
MMJJ_RS01810 -5.3 -1.3 methyl coenzyme M reductase system, component A2 compare
MMJJ_RS00235 -5.0 -14.8 hypothetical protein compare
MMJJ_RS09095 -4.7 -8.5 MMPL family transporter compare
MMJJ_RS05190 -4.7 -6.9 gamma carbonic anhydrase family protein compare
MMJJ_RS00050 -4.6 -10.9 AAA family ATPase compare
MMJJ_RS03230 -4.6 -2.1 NAD(P)/FAD-dependent oxidoreductase compare
MMJJ_RS05065 -4.5 -3.0 (4-{4-[2-(gamma-L- glutamylamino)ethyl]phenoxymethyl}furan-2-yl)methanamine synthase compare
MMJJ_RS00530 -4.5 -16.6 cobalt ECF transporter T component CbiQ compare
MMJJ_RS03815 -4.4 -1.3 nascent polypeptide-associated complex protein compare
MMJJ_RS02045 -4.4 -2.1 molybdenum cofactor guanylyltransferase compare
MMJJ_RS06050 -4.4 -10.9 molybdopterin molybdotransferase MoeA compare
MMJJ_RS05260 -4.4 -4.5 ATP-grasp domain-containing protein compare
MMJJ_RS03065 -4.4 -15.2 CBS domain-containing protein compare
MMJJ_RS03670 -4.3 -3.1 precorrin-2 C(20)-methyltransferase compare
MMJJ_RS03580 -4.3 -1.7 TIGR00303 family protein compare
MMJJ_RS02055 -4.3 -12.5 GTP 3',8-cyclase MoaA compare
MMJJ_RS08020 -4.2 -11.1 nucleotidyltransferase domain-containing protein compare
MMJJ_RS08500 -4.2 -6.0 L-sulfolactate dehydrogenase compare
MMJJ_RS05445 -4.2 -1.2 2-oxoacid:acceptor oxidoreductase subunit alpha compare
MMJJ_RS05115 -4.2 -5.1 P-II family nitrogen regulator compare
MMJJ_RS06930 -4.2 -1.5 type II methionyl aminopeptidase compare
MMJJ_RS04980 -4.2 -2.1 bifunctional precorrin-2 dehydrogenase/sirohydrochlorin ferrochelatase compare
MMJJ_RS04485 -4.1 -8.2 riboflavin synthase compare
MMJJ_RS08065 -4.1 -1.2 precorrin-6Y C5,15-methyltransferase (decarboxylating) subunit CbiT compare
MMJJ_RS02035 -4.1 -5.4 4-hydroxy-tetrahydrodipicolinate synthase compare
MMJJ_RS02200 -4.1 -10.1 chorismate pyruvate-lyase family protein compare
MMJJ_RS00210 -4.0 -1.3 DUF530 family protein compare
MMJJ_RS03055 -4.0 -2.1 hypothetical protein compare
MMJJ_RS00265 -4.0 -5.8 TIGR02253 family HAD-type hydrolase compare
MMJJ_RS00070 -4.0 -2.3 CooT family nickel-binding protein compare
MMJJ_RS00045 -3.9 -15.5 CO dehydrogenase/CO-methylating acetyl-CoA synthase complex subunit beta compare
MMJJ_RS03295 -3.9 -14.8 PHP domain-containing protein compare
MMJJ_RS00040 -3.9 -9.0 CO dehydrogenase/acetyl-CoA synthase complex subunit epsilon compare
MMJJ_RS07360 -3.9 -1.0 TIGR00269 family protein compare
MMJJ_RS04995 -3.9 -4.1 Tfx family DNA-binding protein compare
MMJJ_RS04800 -3.9 -5.2 2-phospho-L-lactate guanylyltransferase compare
MMJJ_RS07430 -3.9 -2.5 ribonuclease VapC compare
MMJJ_RS03965 -3.8 -0.9 DNA-directed RNA polymerase subunit L compare
MMJJ_RS00645 -3.8 -11.3 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
MMJJ_RS08080 -3.8 -9.2 TIGR00300 family protein compare
MMJJ_RS04730 -3.8 -1.4 tyrosine decarboxylase MfnA compare
MMJJ_RS01865 -3.8 -4.3 peptidyl-tRNA hydrolase Pth2 compare
MMJJ_RS06390 -3.8 -1.1 NADPH-dependent F420 reductase compare
MMJJ_RS05575 -3.8 -2.9 2-amino-5-formylamino-6-ribosylaminopyrimidin- 4(3H)-one 5'-monophosphate deformylase compare
MMJJ_RS05650 -3.8 -1.5 formylmethanofuran dehydrogenase subunit B compare
MMJJ_RS00275 -3.8 -1.6 coenzyme F420-0:L-glutamate ligase compare
MMJJ_RS08855 -3.8 -3.4 cyclic pyranopterin monophosphate synthase MoaC compare
MMJJ_RS05450 -3.8 -12.7 TIGR03576 family pyridoxal phosphate-dependent enzyme compare
MMJJ_RS05195 -3.7 -4.9 hypothetical protein compare
MMJJ_RS04970 -3.7 -1.1 DUF655 domain-containing protein compare
MMJJ_RS06155 -3.7 -4.2 phosphatidylglycerophosphatase A compare
MMJJ_RS05535 -3.7 -13.8 hypothetical protein compare
MMJJ_RS04155 -3.7 -5.9 hypothetical protein compare
MMJJ_RS04655 -3.7 -6.1 FAD-dependent oxidoreductase compare
MMJJ_RS00060 -3.7 -16.8 acetyl-CoA decarbonylase/synthase complex subunit gamma compare
MMJJ_RS03995 -3.7 -6.3 PHP domain-containing protein compare
MMJJ_RS07995 -3.7 -6.1 molybdenum cofactor biosynthesis protein MoaE compare
MMJJ_RS03875 -3.6 -3.0 CBS domain-containing protein compare
MMJJ_RS09175 -3.6 -0.7 anthranilate synthase component I compare
MMJJ_RS06725 -3.6 -12.4 MogA/MoaB family molybdenum cofactor biosynthesis protein compare
MMJJ_RS02275 -3.6 -4.1 nucleotidyltransferase domain-containing protein compare
MMJJ_RS06260 -3.6 -5.8 6-carboxyhexanoate--CoA ligase compare
MMJJ_RS06240 -3.6 -1.7 dihydropteroate synthase-like protein compare
MMJJ_RS04475 -3.6 -3.2 3,4-dihydroxy-2-butanone-4-phosphate synthase compare
MMJJ_RS01475 -3.6 -1.1 signal recognition particle-docking protein FtsY compare
MMJJ_RS04685 -3.5 -9.1 carbamoyltransferase HypF compare
MMJJ_RS01600 -3.5 -1.8 radical SAM protein compare
MMJJ_RS07665 -3.5 -20.4 formate dehydrogenase subunit alpha compare
MMJJ_RS01345 -3.5 -5.0 (5-formylfuran-3-yl)methyl phosphate synthase compare
MMJJ_RS00195 -3.5 -1.6 precorrin-3B C(17)-methyltransferase compare
MMJJ_RS03155 -3.5 -9.0 hypothetical protein compare
MMJJ_RS06485 -3.5 -1.4 phosphoglycerate kinase compare
MMJJ_RS05655 -3.5 -6.0 HisA/HisF family protein compare
MMJJ_RS00520 -3.5 -5.6 PDGLE domain-containing protein compare
MMJJ_RS06025 -3.4 -17.1 4Fe-4S binding protein compare
MMJJ_RS07715 -3.4 -1.8 UbiD family decarboxylase compare
MMJJ_RS00515 -3.4 -14.6 cobalt transporter CbiM compare
MMJJ_RS00055 -3.4 -9.8 CO dehydrogenase/acetyl-CoA synthase subunit delta compare
MMJJ_RS03615 -3.4 -2.4 cobalt-precorrin-8 methylmutase compare
MMJJ_RS04675 -3.4 -6.3 thiamine pyrophosphate-binding protein compare
MMJJ_RS08915 -3.4 -6.2 CoB--CoM heterodisulfide reductase subunit C compare
MMJJ_RS03225 -3.4 -1.6 4Fe-4S binding protein compare
MMJJ_RS05995 -3.4 -1.5 ATP-binding cassette domain-containing protein compare
MMJJ_RS03760 -3.4 -2.8 hydrogenase maturation nickel metallochaperone HypA compare
MMJJ_RS00270 -3.4 -2.3 adenosylcobinamide-GDP ribazoletransferase compare
MMJJ_RS03895 -3.4 -2.9 hydrogenase expression/formation protein HypE compare
MMJJ_RS08035 -3.4 -6.0 cobalt-precorrin-7 (C(5))-methyltransferase compare
MMJJ_RS06015 -3.4 -9.7 Na(+)/H(+) antiporter subunit B compare
MMJJ_RS04520 -3.4 -4.9 coenzyme F430 synthase compare
MMJJ_RS05765 -3.4 -0.7 flagellar protein E compare
MMJJ_RS07485 -3.3 -8.0 DedA family protein compare
MMJJ_RS07650 -3.3 -18.8 formate/nitrite transporter family protein compare
MMJJ_RS07980 -3.3 -11.9 biotin synthase BioB compare
MMJJ_RS00080 -3.3 -10.1 DUF166 domain-containing protein compare
MMJJ_RS03190 -3.3 -1.3 phosphopyruvate hydratase compare
MMJJ_RS06010 -3.3 -3.8 hypothetical protein compare
MMJJ_RS05540 -3.3 -19.0 LysR family transcriptional regulator compare
MMJJ_RS02190 -3.3 -13.3 molybdopterin biosynthesis protein compare
MMJJ_RS01360 -3.3 -1.1 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
MMJJ_RS05360 -3.3 -5.2 nickel-responsive transcriptional regulator NikR compare
MMJJ_RS05490 -3.3 -1.3 imidazole glycerol phosphate synthase subunit HisF compare
MMJJ_RS03620 -3.3 -4.7 DUF2097 domain-containing protein compare
MMJJ_RS00035 -3.3 -14.6 CO dehydrogenase/acetyl-CoA synthase complex subunit alpha compare
MMJJ_RS06635 -3.3 -13.9 4Fe-4S binding protein compare
MMJJ_RS08405 -3.3 -13.2 nickel-dependent hydrogenase large subunit compare
MMJJ_RS06705 -3.3 -3.0 bifunctional NADP phosphatase/NAD kinase compare
MMJJ_RS08920 -3.3 -14.1 CoB--CoM heterodisulfide reductase subunit B compare
MMJJ_RS03110 -3.3 -2.9 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))- methylthiotransferase compare
MMJJ_RS00075 -3.2 -9.1 AAA family ATPase compare
MMJJ_RS04565 -3.2 -2.2 sirohydrochlorin nickelochelatase compare
MMJJ_RS01935 -3.2 -3.4 O-phosphoseryl-tRNA(Sec) selenium transferase compare
MMJJ_RS06755 -3.2 -12.3 diadenylate cyclase compare
MMJJ_RS07950 -3.2 -2.1 4Fe-4S binding protein compare
MMJJ_RS02920 -3.2 -1.5 30S ribosomal protein S27ae compare
MMJJ_RS05070 -3.2 -1.4 DNA primase catalytic subunit PriS compare
MMJJ_RS08000 -3.2 -8.6 HesA/MoeB/ThiF family protein compare
MMJJ_RS08810 -3.2 -0.6 DUF4040 domain-containing protein compare
MMJJ_RS07635 -3.2 -9.0 response regulator transcription factor compare
MMJJ_RS05950 -3.2 -1.9 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase compare
MMJJ_RS05720 -3.2 -1.2 glutamine--fructose-6-phosphate transaminase (isomerizing) compare
MMJJ_RS00215 -3.2 -1.5 CCA tRNA nucleotidyltransferase compare
MMJJ_RS06270 -3.2 -6.0 dethiobiotin synthase compare
MMJJ_RS06730 -3.2 -5.3 ATP-binding cassette domain-containing protein compare
MMJJ_RS07655 -3.1 -14.3 hypothetical protein compare
MMJJ_RS07670 -3.1 -16.2 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C-terminal domain compare
MMJJ_RS05110 -3.1 -17.8 ammonium transporter conserved
MMJJ_RS07640 -3.1 -19.1 cache domain-containing protein compare
MMJJ_RS06265 -3.1 -11.4 8-amino-7-oxononanoate synthase compare
MMJJ_RS03270 -3.1 -1.7 ribosome biogenesis/translation initiation ATPase RLI compare
MMJJ_RS07410 -3.1 -2.5 methanogenesis marker protein Mmp4/MtxX compare
MMJJ_RS03630 -3.1 -10.7 AMP phosphorylase compare
MMJJ_RS04145 -3.1 -8.5 glutamate-1-semialdehyde 2,1-aminomutase compare
MMJJ_RS04010 -3.1 -5.3 archaeal proteasome endopeptidase complex subunit alpha compare
MMJJ_RS06915 -3.1 -12.4 helix-turn-helix domain-containing protein compare
MMJJ_RS08005 -3.1 -14.6 formate dehydrogenase accessory sulfurtransferase FdhD compare
MMJJ_RS03820 -3.0 -3.1 hydrogenase formation protein HypD compare
MMJJ_RS06840 -3.0 -2.1 nickel-dependent hydrogenase large subunit compare
MMJJ_RS00065 -3.0 -9.4 4Fe-4S dicluster domain-containing protein compare
MMJJ_RS03880 -3.0 -12.8 TraB/GumN family protein compare
MMJJ_RS06490 -3.0 -1.6 methanogenesis marker 2 protein compare
MMJJ_RS07660 -3.0 -7.6 carbonic anhydrase compare
MMJJ_RS00580 -3.0 -1.3 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase subunit CofG compare
MMJJ_RS00345 -3.0 -8.2 4-hydroxy-tetrahydrodipicolinate reductase compare
MMJJ_RS00935 -3.0 -8.9 nickel pincer cofactor biosynthesis protein LarB compare
MMJJ_RS09100 -3.0 -8.4 COG1361 S-layer family protein compare
MMJJ_RS03660 -3.0 -2.6 DUF447 family protein compare
MMJJ_RS00600 -3.0 -2.1 hydroxymethylbilane synthase compare
MMJJ_RS03005 -3.0 -2.4 Ni-sirohydrochlorin a,c-diamide reductive cyclase catalytic subunit compare
MMJJ_RS08250 -3.0 -5.4 hydrogenase maturation peptidase HycI compare
MMJJ_RS03785 -3.0 -1.6 hypothetical protein compare
MMJJ_RS01915 -3.0 -7.6 precorrin-6A reductase compare
MMJJ_RS03920 -2.9 -11.2 nickel pincer cofactor biosynthesis protein LarC compare
MMJJ_RS07160 -2.9 -14.8 M20 family metallo-hydrolase compare
MMJJ_RS08320 -2.9 -1.6 CDP-diacylglycerol--serine O-phosphatidyltransferase compare
MMJJ_RS05330 -2.9 -1.1 DNA polymerase II large subunit compare
MMJJ_RS00570 -2.9 -1.2 ribonuclease P compare
MMJJ_RS06375 -2.9 -2.9 UbiX family flavin prenyltransferase compare
MMJJ_RS03150 -2.9 -5.1 2-phospho-L-lactate transferase compare
MMJJ_RS00355 -2.9 -2.1 ribonuclease P protein component 4 compare
MMJJ_RS06910 -2.9 -1.4 energy-converting NiFe hydrogenase A subunit EhaA compare
MMJJ_RS06040 -2.9 -2.7 NADH-quinone oxidoreductase subunit H compare
MMJJ_RS06030 -2.9 -3.7 4Fe-4S binding protein compare
MMJJ_RS05810 -2.9 -5.7 precorrin-4 C(11)-methyltransferase compare
MMJJ_RS04615 -2.8 -3.2 methanogenesis marker 3 protein compare
MMJJ_RS00450 -2.8 -1.1 DUF126 domain-containing protein compare
MMJJ_RS05610 -2.8 -3.5 CDP-2,3-bis-(O-geranylgeranyl)-sn-glycerol synthase compare
MMJJ_RS05295 -2.8 -11.4 cobyrinic acid a,c-diamide synthase compare
MMJJ_RS06860 -2.8 -2.8 hypothetical protein compare
MMJJ_RS04975 -2.8 -1.2 glycosyltransferase family 4 protein compare
MMJJ_RS05370 -2.8 -5.5 LysR family transcriptional regulator compare
MMJJ_RS06835 -2.8 -11.3 4Fe-4S binding protein compare
MMJJ_RS08625 -2.8 -6.0 magnesium/cobalt transporter CorA compare
MMJJ_RS02090 -2.8 -3.6 tyramine--L-glutamate ligase compare
MMJJ_RS07720 -2.7 -1.3 UPF0058 family protein compare
MMJJ_RS06940 -2.7 -9.7 metalloregulator ArsR/SmtB family transcription factor compare
MMJJ_RS07585 -2.7 -7.8 DHH family phosphoesterase compare
MMJJ_RS01830 -2.7 -2.4 tRNA(Ile)(2)-agmatinylcytidine synthase compare
MMJJ_RS06180 -2.7 -1.5 tryptophan--tRNA ligase compare
MMJJ_RS06945 -2.7 -8.8 molybdopterin-guanine dinucleotide biosynthesis protein MobB compare
MMJJ_RS06000 -2.7 -3.3 cation:proton antiporter subunit C compare
MMJJ_RS07275 -2.7 -1.2 formate--phosphoribosylaminoimidazolecarboxamide ligase compare
MMJJ_RS06020 -2.7 -4.2 hypothetical protein compare
MMJJ_RS01765 -2.7 -7.2 winged helix-turn-helix domain-containing protein compare
MMJJ_RS08780 -2.7 -5.3 D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase compare
MMJJ_RS00560 -2.7 -2.6 homoisocitrate dehydrogenase compare
MMJJ_RS06625 -2.6 -1.2 pyruvate synthase subunit PorB compare
MMJJ_RS08330 -2.6 -2.1 SufD family Fe-S cluster assembly protein compare
MMJJ_RS07155 -2.6 -8.1 [5-(aminomethyl)furan-3-yl]methyl phosphate kinase compare
MMJJ_RS02040 -2.6 -1.3 Asp-tRNA(Asn) amidotransferase subunit GatC compare
MMJJ_RS06820 -2.6 -3.7 CBS domain-containing protein compare
MMJJ_RS03865 -2.6 -0.9 phosphoribosyl-AMP cyclohydrolase compare
MMJJ_RS05620 -2.6 -3.9 CoB--CoM heterodisulfide reductase iron-sulfur subunit A family protein compare
MMJJ_RS05935 -2.6 -1.6 Era-like GTP-binding protein compare
MMJJ_RS03170 -2.6 -6.2 DUF5612 domain-containing protein compare
MMJJ_RS05135 -2.6 -0.8 50S ribosomal protein L18Ae compare
MMJJ_RS05800 -2.6 -11.3 coenzyme F420-0:L-glutamate ligase compare
MMJJ_RS04150 -2.6 -1.6 DUF5379 domain-containing protein compare
MMJJ_RS06630 -2.6 -12.3 4Fe-4S dicluster domain-containing protein compare
MMJJ_RS00385 -2.5 -8.6 TIGR00454 family protein compare


Specific Phenotypes

For 27 genes in this experiment

For nitrogen source Adenosine in Methanococcus maripaludis JJ

For nitrogen source Adenosine across organisms