Experiment set4IT011 for Methanococcus maripaludis S2

Compare to:

H2 deepwell vitamin and casamino acid FREE

200 most important genes:

  gene name fitness t score description  
MMP_RS07005 -3.6 -1.0 4Fe-4S binding protein compare
MMP_RS03475 -3.4 -0.9 hypothetical protein compare
MMP_RS03435 -3.1 -2.5 ketol-acid reductoisomerase compare
MMP_RS02900 -3.1 -1.0 imidazoleglycerol-phosphate dehydratase HisB compare
MMP_RS00300 -3.0 -1.0 6 7-dimethyl-8-ribityllumazine synthase compare
MMP_RS07730 -2.9 -3.1 pyruvate synthase subunit beta compare
MMP_RS01020 -2.9 -1.4 3 4-dihydroxy-2-butanone-4-phosphate synthase compare
MMP_RS03315 -2.8 -1.9 ferrous iron transport protein A compare
MMP_RS01005 -2.7 -1.8 riboflavin synthase compare
MMP_RS05500 -2.6 -10.8 2-isopropylmalate synthase compare
MMP_RS06285 -2.6 -3.7 precorrin-6Y C5 15-methyltransferase (decarboxylating) subunit CbiT compare
MMP_RS07345 -2.6 -7.5 glycine synthesis protein GlyXL (from data) compare
MMP_RS03450 -2.5 -3.1 glycine synthesis protein GlyXS (from data) compare
MMP_RS07845 -2.5 -4.1 LL-diaminopimelate aminotransferase compare
MMP_RS07555 -2.4 -1.0 monovalent cation/H+ antiporter subunit E compare
MMP_RS03600 -2.4 -3.4 triose-phosphate isomerase compare
MMP_RS05930 -2.4 -3.4 3-isopropylmalate dehydratase large subunit compare
MMP_RS08635 -2.4 -2.6 UbiA family prenyltransferase compare
MMP_RS01175 -2.3 -6.3 triphosphoribosyl-dephospho-CoA synthase compare
MMP_RS05555 -2.3 -1.8 DUF4040 domain-containing protein compare
MMP_RS07630 -2.3 -2.0 ATP-binding cassette domain-containing protein compare
MMP_RS01455 -2.3 -8.5 nickel pincer cofactor biosynthesis protein LarC compare
MMP_RS06355 -2.2 -3.7 molybdenum cofactor biosynthesis protein MoaE compare
MMP_RS05425 -2.2 -6.1 monovalent cation/H+ antiporter complex subunit F compare
MMP_RS04615 -2.1 -4.9 PDGLE domain-containing protein compare
MMP_RS04605 -2.1 -5.5 cobalt ECF transporter T component CbiQ compare
MMP_RS05515 -2.1 -8.5 cyclic pyranopterin monophosphate synthase MoaC compare
MMP_RS03015 -2.1 -12.1 GTP 3' 8-cyclase MoaA compare
MMP_RS04710 -2.0 -1.8 hypothetical protein compare
MMP_RS05920 -2.0 -0.8 50S ribosomal protein L37e compare
MMP_RS06400 -2.0 -2.0 4Fe-4S binding protein compare
MMP_RS02135 -1.9 -5.4 DUF5612 domain-containing protein compare
MMP_RS07635 -1.9 -5.9 MogA/MoaB family molybdenum cofactor biosynthesis protein compare
MMP_RS04620 -1.9 -12.1 cobalt transporter CbiM compare
MMP_RS08715 -1.9 -2.7 formylmethanofuran dehydrogenase subunit B compare
MMP_RS06370 -1.9 -6.1 biotin synthase BioB compare
MMP_RS04500 -1.9 -12.5 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
MMP_RS06975 -1.8 -2.6 sulfide-dependent adenosine diphosphate thiazole synthase compare
MMP_RS06895 -1.8 -2.5 selenocysteine-specific translation elongation factor compare
MMP_RS06270 -1.8 -6.4 TIGR00300 family protein compare
MMP_RS06625 -1.8 -2.1 DNA primase compare
MMP_RS06350 -1.8 -4.8 HesA/MoeB/ThiF family protein compare
MMP_RS02195 -1.8 -4.9 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-methylthiotransferase compare
MMP_RS03400 -1.8 -3.3 archease compare
MMP_RS06375 -1.8 -4.7 ATP-dependent sacrificial sulfur transferase LarE compare
MMP_RS03700 -1.8 -8.3 sodium:proton antiporter compare
MMP_RS06105 -1.7 -7.9 hydrogenase maturation peptidase HycI compare
MMP_RS08330 -1.7 -6.5 NADH-quinone oxidoreductase subunit H compare
MMP_RS01720 -1.7 -2.8 replication factor C large subunit compare
MMP_RS00750 -1.6 -2.8 fumarate hydratase compare
MMP_RS07600 -1.6 -2.7 Ni-sirohydrochlorin a c-diamide synthase compare
MMP_RS01220 -1.6 -8.3 hypothetical protein compare
MMP_RS07735 -1.6 -1.1 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha compare
MMP_RS07185 -1.6 -10.0 pyridoxal phosphate-dependent aminotransferase compare
MMP_RS04790 -1.6 -11.2 4-hydroxy-tetrahydrodipicolinate reductase compare
MMP_RS08745 -1.6 -6.0 CDP-2 3-bis-(O-geranylgeranyl)-sn-glycerol synthase compare
MMP_RS03035 -1.6 -3.1 4-hydroxy-tetrahydrodipicolinate synthase compare
MMP_RS08790 -1.6 -2.3 translation initiation factor IF-2 subunit alpha compare
MMP_RS03025 -1.6 -5.1 molybdenum cofactor guanylyltransferase compare
MMP_RS08105 -1.6 -6.2 6-carboxyhexanoate--CoA ligase compare
MMP_RS02355 -1.5 -3.5 30S ribosomal protein S27ae compare
MMP_RS07750 -1.5 -4.6 DUF357 domain-containing protein compare
MMP_RS07955 -1.5 -5.7 FumA C-terminus/TtdB family hydratase beta subunit compare
MMP_RS02345 -1.5 -3.2 GTP-dependent dephospho-CoA kinase family protein compare
MMP_RS01610 -1.5 -2.8 hypothetical protein compare
MMP_RS01830 -1.5 -2.1 tRNA-Val compare
MMP_RS06730 -1.5 -2.4 phosphopantothenate/pantothenate synthetase compare
MMP_RS08095 -1.5 -8.0 dethiobiotin synthase compare
MMP_RS04685 -1.5 -2.8 DUF126 domain-containing protein compare
MMP_RS08720 -1.5 -1.6 4Fe-4S binding protein compare
MMP_RS06865 -1.5 -2.6 HypC/HybG/HupF family hydrogenase formation chaperone compare
MMP_RS02240 -1.5 -2.5 methanogenesis marker 7 protein compare
MMP_RS01225 -1.5 -5.0 DUF5379 domain-containing protein compare
MMP_RS01545 -1.5 -1.3 CBS domain-containing protein compare
MMP_RS06295 -1.5 -5.5 methanogenesis marker 14 protein compare
MMP_RS02800 -1.5 -5.3 nucleotidyltransferase domain-containing protein compare
MMP_RS04215 -1.5 -7.2 nickel pincer cofactor biosynthesis protein LarB compare
MMP_RS06340 -1.4 -7.4 phosphoadenosine phosphosulfate reductase family protein compare
MMP_RS03250 -1.4 -4.5 MJ1244 family protein compare
MMP_RS08100 -1.4 -8.1 8-amino-7-oxononanoate synthase compare
MMP_RS01500 -1.4 -1.9 CBS domain-containing protein compare
MMP_RS05845 -1.4 -2.0 tRNA-intron lyase compare
MMP_RS07575 -1.4 -4.1 RNA ligase partner protein compare
MMP_RS08210 -1.4 -2.3 phosphatidylglycerophosphatase A compare
MMP_RS02235 -1.4 -7.6 CBS domain-containing protein compare
MMP_RS01265 -1.4 -3.4 hypothetical protein compare
MMP_RS01385 -1.4 -0.7 imidazole glycerol phosphate synthase subunit HisH compare
MMP_RS06700 -1.4 -7.3 hypothetical protein compare
MMP_RS07645 -1.4 -5.2 aldehyde dehydrogenase family protein compare
MMP_RS05950 -1.3 -8.3 nickel-dependent hydrogenase large subunit compare
MMP_RS05540 -1.3 -3.3 hypothetical protein compare
MMP_RS02805 -1.3 -1.6 HEPN domain-containing protein compare
MMP_RS08760 -1.3 -2.2 hypothetical protein compare
MMP_RS06130 -1.3 -3.6 peptidylprolyl isomerase compare
MMP_RS05265 -1.3 -2.5 2-isopropylmalate synthase compare
MMP_RS07195 -1.3 -8.5 M20 family metallo-hydrolase compare
MMP_RS00685 -1.3 -2.6 2-phospho-L-lactate guanylyltransferase compare
MMP_RS02885 -1.3 -9.6 molybdopterin biosynthesis protein compare
MMP_RS06680 -1.3 -7.5 Coenzyme F420 hydrogenase/dehydrogenase beta subunit C-terminal domain compare
MMP_RS03390 -1.3 -6.1 malate dehydrogenase compare
MMP_RS02010 -1.3 -6.6 PHP domain-containing protein compare
MMP_RS07355 -1.3 -1.1 transcription factor S compare
MMP_RS00130 -1.3 -1.3 nickel-responsive transcriptional regulator NikR compare
MMP_RS02875 -1.3 -7.1 chorismate pyruvate-lyase family protein compare
MMP_RS08350 -1.3 -1.1 hypothetical protein compare
MMP_RS06315 -1.3 -1.1 cobalt-precorrin-7 (C(5))-methyltransferase compare
MMP_RS04875 -1.2 -5.0 energy-converting hydrogenase B subunit P compare
MMP_RS04775 -1.2 -3.3 adenosylhomocysteinase compare
MMP_RS02175 -1.2 -0.8 DUF1611 domain-containing protein compare
MMP_RS01795 -1.2 -1.6 methanogenesis marker 6 protein compare
MMP_RS00810 -1.2 -5.5 topoisomerase DNA-binding C4 zinc finger domain-containing protein compare
MMP_RS08320 -1.2 -4.7 molybdopterin molybdotransferase MoeA compare
MMP_RS08355 -1.2 -4.9 Na(+)/H(+) antiporter subunit B compare
MMP_RS09020 -1.1 -0.9 hypothetical protein compare
MMP_RS01380 -1.1 -3.6 PHP domain-containing protein compare
MMP_RS06475 -1.1 -4.2 FAD-dependent oxidoreductase compare
MMP_RS06345 -1.1 -6.2 formate dehydrogenase accessory sulfurtransferase FdhD compare
MMP_RS05975 -1.1 -1.5 hypothetical protein compare
MMP_RS03960 -1.1 -0.8 hypothetical protein compare
MMP_RS06120 -1.1 -1.7 UPF0147 family protein compare
MMP_RS06485 -1.1 -1.0 zinc ribbon domain-containing protein compare
MMP_RS00735 -1.0 -3.0 5 10-methenyltetrahydromethanopterin hydrogenase compare
MMP_RS09055 -1.0 -0.9 CAP domain-containing protein compare
MMP_RS07725 -1.0 -2.7 4Fe-4S dicluster domain-containing protein compare
MMP_RS03910 -1.0 -1.9 hypothetical protein compare
MMP_RS05875 -1.0 -2.7 hydroxyethylthiazole kinase compare
MMP_RS06885 -1.0 -2.1 50S ribosome-binding GTPase compare
MMP_RS08345 -1.0 -7.4 4Fe-4S binding protein compare
MMP_RS00305 -1.0 -1.2 phosphoribosyl-ATP diphosphatase compare
MMP_RS01335 -1.0 -2.0 prefoldin subunit beta compare
MMP_RS00895 -1.0 -2.1 hypothetical protein compare
MMP_RS02280 -1.0 -0.7 DUF211 domain-containing protein compare
MMP_RS06925 -1.0 -1.8 ribonuclease VapC4 compare
MMP_RS00725 -1.0 -4.1 5 10-methenyltetrahydromethanopterin hydrogenase cofactor biosynthesis protein HmdC compare
MMP_RS08725 -1.0 -1.4 Ni/Fe hydrogenase subunit alpha compare
MMP_RS05550 -1.0 -0.5 cation:proton antiporter compare
MMP_RS04890 -1.0 -0.7 adenylyltransferase/cytidyltransferase family protein compare
MMP_RS08360 -1.0 -3.5 hypothetical protein compare
MMP_RS01755 -1.0 -1.1 DUF2097 domain-containing protein compare
MMP_RS08915 -0.9 -2.9 2 5-diamino-6-(ribosylamino)-4(3H)-pyrimidinone 5'-phosphate reductase compare
MMP_RS08650 -0.9 -2.0 glutamine--fructose-6-phosphate transaminase (isomerizing) compare
MMP_RS08340 -0.9 -2.5 4Fe-4S binding protein compare
MMP_RS03095 -0.9 -4.1 diphthine synthase compare
MMP_RS06020 -0.9 -2.6 archaeoflavoprotein AfpA compare
MMP_RS08335 -0.9 -4.3 NADH-quinone oxidoreductase subunit B family protein compare
MMP_RS07710 -0.9 -5.1 cell division protein FtsZ compare
MMP_RS01800 -0.9 -3.3 TIGR00303 family protein compare
MMP_RS03140 -0.9 -5.9 hypothetical protein compare
MMP_RS04955 -0.9 -3.6 DNA topoisomerase I compare
MMP_RS06685 -0.9 -5.6 formate dehydrogenase H subunit alpha selenocysteine-containing compare
MMP_RS08995 -0.9 -1.2 hypothetical protein compare
MMP_RS07075 -0.9 -2.9 phosphomannomutase/phosphoglucomutase compare
MMP_RS08165 -0.9 -1.5 phosphoglycerate dehydrogenase compare
MMP_RS08645 -0.9 -4.2 UPF0179 family protein compare
MMP_RS00120 -0.9 -3.5 LysR family transcriptional regulator compare
MMP_RS06705 -0.9 -3.7 formate/nitrite transporter family protein compare
MMP_RS07420 -0.9 -2.8 metalloregulator ArsR/SmtB family transcription factor compare
MMP_RS03420 -0.8 -2.3 acetolactate synthase small subunit compare
MMP_RS02145 -0.8 -3.7 winged helix-turn-helix transcriptional regulator compare
MMP_RS02245 -0.8 -1.7 hypothetical protein compare
MMP_RS07540 -0.8 -2.9 CBS domain-containing protein compare
MMP_RS01665 -0.8 -2.3 DUF2111 domain-containing protein compare
MMP_RS06720 -0.8 -3.7 response regulator transcription factor compare
MMP_RS04785 -0.8 -5.9 hypothetical protein compare
MMP_RS00695 -0.8 -0.6 biotin--[acetyl-CoA-carboxylase] ligase compare
MMP_RS04850 -0.8 -6.5 UPF0254 family protein compare
MMP_RS03445 -0.8 -0.7 methanogenesis marker 17 protein compare
MMP_RS03580 -0.8 -2.0 signal recognition particle-docking protein FtsY compare
MMP_RS07435 -0.8 -1.3 GMP synthase subunit A compare
MMP_RS04585 -0.8 -5.2 AIR synthase related protein compare
MMP_RS01900 -0.8 -5.8 hypothetical protein compare
MMP_RS06930 -0.8 -4.4 MBL fold metallo-hydrolase compare
MMP_RS00720 -0.8 -4.6 metal-dependent hydrolase compare
MMP_RS08940 -0.8 -0.9 MetS family NSS transporter small subunit compare
MMP_RS08440 -0.8 -1.5 cell division protein SepF compare
MMP_RS03145 -0.8 -3.7 fibrillarin-like rRNA/tRNA 2'-O-methyltransferase compare
MMP_RS08365 -0.8 -2.2 energy conserving hydrogenase EhbF compare
MMP_RS08000 -0.8 -6.3 methyl coenzyme M reductase-arginine methyltransferase Mmp10 compare
MMP_RS07545 -0.8 -0.8 HTH domain-containing protein compare
MMP_RS01925 -0.7 -4.3 DUF1616 domain-containing protein compare
MMP_RS01085 -0.7 -1.3 hypothetical protein compare
MMP_RS07425 -0.7 -3.5 GTP-binding protein compare
MMP_RS05460 -0.7 -5.2 YcaO-related McrA-glycine thioamidation protein compare
MMP_RS00050 -0.7 -3.5 AarF/UbiB family protein compare
MMP_RS08460 -0.7 -1.4 proteasome-activating nucleotidase compare
MMP_RS03155 -0.7 -2.8 precorrin-6A reductase compare
MMP_RS03535 -0.7 -2.0 helix-turn-helix transcriptional regulator compare
MMP_RS07380 -0.7 -1.3 transcription elongation factor Spt5 compare
MMP_RS02165 -0.7 -3.9 tRNA-dihydrouridine synthase compare
MMP_RS01905 -0.7 -5.4 glycosyltransferase compare
MMP_RS06980 -0.7 -3.3 tRNA 2-thiocytidine biosynthesis TtcA family protein compare
MMP_RS06725 -0.7 -4.2 hypothetical protein compare
MMP_RS00730 -0.7 -2.8 5 10-methenyltetrahydromethanopterin hydrogenase cofactor biosynthesis protein HmdB compare
MMP_RS07390 -0.7 -1.4 cell division protein FtsZ compare
MMP_RS01840 -0.7 -4.6 TIGR00289 family protein compare
MMP_RS05430 -0.7 -2.7 TIGR00288 family NYN domain-containing protein compare
MMP_RS05925 -0.7 -1.8 small nuclear ribonucleoprotein compare
MMP_RS07695 -0.7 -2.7 DUF3236 domain-containing protein compare
MMP_RS01725 -0.7 -2.4 class I SAM-dependent methyltransferase family protein compare
MMP_RS07385 -0.7 -1.2 protein translocase SEC61 complex subunit gamma compare


Specific Phenotypes

None in this experiment

For Methanococcus maripaludis S2 in nutrient t1 experiments

For nutrient t1 Sodium acetate across organisms