Experiment set4IT011 for Methanococcus maripaludis JJ

Compare to:

Formate N-free with 2mM Adenosine

200 most important genes:

  gene name fitness t score description  
MMJJ_RS02040 -5.1 -1.1 Asp-tRNA(Asn) amidotransferase subunit GatC compare
MMJJ_RS08870 -4.8 -0.6 2-isopropylmalate synthase compare
MMJJ_RS04485 -4.7 -6.3 riboflavin synthase compare
MMJJ_RS00235 -4.6 -19.4 hypothetical protein compare
MMJJ_RS03270 -4.5 -1.1 ribosome biogenesis/translation initiation ATPase RLI compare
MMJJ_RS08855 -4.2 -2.7 cyclic pyranopterin monophosphate synthase MoaC compare
MMJJ_RS03155 -4.2 -10.4 hypothetical protein compare
MMJJ_RS02045 -4.2 -1.7 molybdenum cofactor guanylyltransferase compare
MMJJ_RS07505 -4.1 -0.5 DNA-directed RNA polymerase subunit K compare
MMJJ_RS03295 -4.1 -12.6 PHP domain-containing protein compare
MMJJ_RS04200 -4.0 -4.6 triphosphoribosyl-dephospho-CoA synthase compare
MMJJ_RS05195 -4.0 -4.3 hypothetical protein compare
MMJJ_RS04565 -4.0 -1.8 sirohydrochlorin nickelochelatase compare
MMJJ_RS07950 -4.0 -1.3 4Fe-4S binding protein compare
MMJJ_RS00070 -4.0 -2.0 CooT family nickel-binding protein compare
MMJJ_RS04790 -4.0 -1.4 biotin--[acetyl-CoA-carboxylase] ligase compare
MMJJ_RS09095 -3.9 -7.2 MMPL family transporter compare
MMJJ_RS01865 -3.9 -2.9 peptidyl-tRNA hydrolase Pth2 compare
MMJJ_RS03895 -3.9 -2.1 hydrogenase expression/formation protein HypE compare
MMJJ_RS06240 -3.8 -1.1 dihydropteroate synthase-like protein compare
MMJJ_RS03620 -3.8 -3.8 DUF2097 domain-containing protein compare
MMJJ_RS00520 -3.8 -4.5 PDGLE domain-containing protein compare
MMJJ_RS00075 -3.8 -10.6 AAA family ATPase compare
MMJJ_RS03995 -3.8 -4.1 PHP domain-containing protein compare
MMJJ_RS00065 -3.8 -10.2 4Fe-4S dicluster domain-containing protein compare
MMJJ_RS05450 -3.7 -15.4 TIGR03576 family pyridoxal phosphate-dependent enzyme compare
MMJJ_RS03615 -3.7 -1.7 cobalt-precorrin-8 methylmutase compare
MMJJ_RS06000 -3.7 -2.3 cation:proton antiporter subunit C compare
MMJJ_RS00050 -3.7 -7.9 AAA family ATPase compare
MMJJ_RS02935 -3.7 -1.7 DNA-directed RNA polymerase subunit E'' compare
MMJJ_RS08000 -3.7 -9.9 HesA/MoeB/ThiF family protein compare
MMJJ_RS04475 -3.7 -2.3 3,4-dihydroxy-2-butanone-4-phosphate synthase compare
MMJJ_RS09100 -3.7 -10.9 COG1361 S-layer family protein compare
MMJJ_RS00060 -3.7 -15.2 acetyl-CoA decarbonylase/synthase complex subunit gamma compare
MMJJ_RS06625 -3.6 -0.9 pyruvate synthase subunit PorB compare
MMJJ_RS08330 -3.6 -1.2 SufD family Fe-S cluster assembly protein compare
MMJJ_RS03760 -3.6 -1.8 hydrogenase maturation nickel metallochaperone HypA compare
MMJJ_RS00345 -3.6 -10.9 4-hydroxy-tetrahydrodipicolinate reductase compare
MMJJ_RS03670 -3.6 -3.0 precorrin-2 C(20)-methyltransferase compare
MMJJ_RS00265 -3.5 -4.6 TIGR02253 family HAD-type hydrolase compare
MMJJ_RS07635 -3.5 -9.9 response regulator transcription factor compare
MMJJ_RS07975 -3.5 -7.7 ATP-dependent sacrificial sulfur transferase LarE compare
MMJJ_RS00045 -3.5 -11.7 CO dehydrogenase/CO-methylating acetyl-CoA synthase complex subunit beta compare
MMJJ_RS02090 -3.5 -3.6 tyramine--L-glutamate ligase compare
MMJJ_RS09190 -3.5 -0.7 tryptophan synthase subunit beta compare
MMJJ_RS00645 -3.5 -10.0 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
MMJJ_RS08320 -3.5 -0.9 CDP-diacylglycerol--serine O-phosphatidyltransferase compare
MMJJ_RS03580 -3.5 -1.6 TIGR00303 family protein compare
MMJJ_RS01935 -3.5 -2.6 O-phosphoseryl-tRNA(Sec) selenium transferase compare
MMJJ_RS03360 -3.5 -0.6 hypothetical protein compare
MMJJ_RS00035 -3.4 -14.7 CO dehydrogenase/acetyl-CoA synthase complex subunit alpha compare
MMJJ_RS03965 -3.4 -0.7 DNA-directed RNA polymerase subunit L compare
MMJJ_RS05190 -3.4 -5.6 gamma carbonic anhydrase family protein compare
MMJJ_RS03920 -3.4 -14.6 nickel pincer cofactor biosynthesis protein LarC compare
MMJJ_RS04655 -3.4 -4.1 FAD-dependent oxidoreductase compare
MMJJ_RS05575 -3.4 -2.2 2-amino-5-formylamino-6-ribosylaminopyrimidin- 4(3H)-one 5'-monophosphate deformylase compare
MMJJ_RS03055 -3.3 -1.7 hypothetical protein compare
MMJJ_RS00475 -3.3 -1.1 bifunctional ornithine acetyltransferase/N-acetylglutamate synthase compare
MMJJ_RS00040 -3.3 -6.3 CO dehydrogenase/acetyl-CoA synthase complex subunit epsilon compare
MMJJ_RS05070 -3.3 -0.9 DNA primase catalytic subunit PriS compare
MMJJ_RS02200 -3.3 -8.7 chorismate pyruvate-lyase family protein compare
MMJJ_RS03875 -3.3 -2.3 CBS domain-containing protein compare
MMJJ_RS02190 -3.3 -14.2 molybdopterin biosynthesis protein compare
MMJJ_RS05260 -3.3 -4.0 ATP-grasp domain-containing protein compare
MMJJ_RS04800 -3.3 -4.2 2-phospho-L-lactate guanylyltransferase compare
MMJJ_RS03230 -3.3 -2.4 NAD(P)/FAD-dependent oxidoreductase compare
MMJJ_RS03820 -3.3 -1.9 hydrogenase formation protein HypD compare
MMJJ_RS08500 -3.3 -4.7 L-sulfolactate dehydrogenase compare
MMJJ_RS05650 -3.3 -1.1 formylmethanofuran dehydrogenase subunit B compare
MMJJ_RS08020 -3.2 -8.8 nucleotidyltransferase domain-containing protein compare
MMJJ_RS06050 -3.2 -8.0 molybdopterin molybdotransferase MoeA compare
MMJJ_RS00515 -3.2 -11.2 cobalt transporter CbiM compare
MMJJ_RS03630 -3.2 -10.6 AMP phosphorylase compare
MMJJ_RS00580 -3.2 -0.9 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase subunit CofG compare
MMJJ_RS06010 -3.2 -3.3 hypothetical protein compare
MMJJ_RS00530 -3.2 -12.2 cobalt ECF transporter T component CbiQ compare
MMJJ_RS00215 -3.2 -0.9 CCA tRNA nucleotidyltransferase compare
MMJJ_RS08065 -3.2 -1.2 precorrin-6Y C5,15-methyltransferase (decarboxylating) subunit CbiT compare
MMJJ_RS00055 -3.2 -7.5 CO dehydrogenase/acetyl-CoA synthase subunit delta compare
MMJJ_RS05610 -3.2 -1.4 CDP-2,3-bis-(O-geranylgeranyl)-sn-glycerol synthase compare
MMJJ_RS05655 -3.2 -4.5 HisA/HisF family protein compare
MMJJ_RS02055 -3.1 -9.2 GTP 3',8-cyclase MoaA compare
MMJJ_RS05115 -3.1 -4.6 P-II family nitrogen regulator compare
MMJJ_RS00935 -3.1 -11.3 nickel pincer cofactor biosynthesis protein LarB compare
MMJJ_RS03065 -3.1 -10.6 CBS domain-containing protein compare
MMJJ_RS06695 -3.1 -1.4 amidohydrolase compare
MMJJ_RS03005 -3.1 -1.6 Ni-sirohydrochlorin a,c-diamide reductive cyclase catalytic subunit compare
MMJJ_RS05065 -3.1 -2.8 (4-{4-[2-(gamma-L- glutamylamino)ethyl]phenoxymethyl}furan-2-yl)methanamine synthase compare
MMJJ_RS00270 -3.1 -1.8 adenosylcobinamide-GDP ribazoletransferase compare
MMJJ_RS03110 -3.0 -2.2 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))- methylthiotransferase compare
MMJJ_RS08840 -3.0 -2.5 calcium/sodium antiporter compare
MMJJ_RS01880 -3.0 -1.4 RlmE family RNA methyltransferase compare
MMJJ_RS01830 -3.0 -1.1 tRNA(Ile)(2)-agmatinylcytidine synthase compare
MMJJ_RS01345 -3.0 -3.8 (5-formylfuran-3-yl)methyl phosphate synthase compare
MMJJ_RS08585 -3.0 -6.1 M42 family metallopeptidase compare
MMJJ_RS02275 -3.0 -3.5 nucleotidyltransferase domain-containing protein compare
MMJJ_RS01600 -3.0 -1.3 radical SAM protein compare
MMJJ_RS04520 -3.0 -4.2 coenzyme F430 synthase compare
MMJJ_RS02035 -3.0 -4.1 4-hydroxy-tetrahydrodipicolinate synthase compare
MMJJ_RS05445 -3.0 -1.0 2-oxoacid:acceptor oxidoreductase subunit alpha compare
MMJJ_RS03245 -2.9 -0.7 UMP kinase compare
MMJJ_RS03060 -2.9 -1.8 methanogenesis marker 7 protein compare
MMJJ_RS07640 -2.9 -17.9 cache domain-containing protein compare
MMJJ_RS01750 -2.9 -1.4 ferrous iron transport protein A compare
MMJJ_RS07665 -2.9 -17.6 formate dehydrogenase subunit alpha compare
MMJJ_RS06855 -2.9 -0.6 DUF2104 domain-containing protein compare
MMJJ_RS04995 -2.9 -3.8 Tfx family DNA-binding protein compare
MMJJ_RS04975 -2.9 -0.8 glycosyltransferase family 4 protein compare
MMJJ_RS08920 -2.8 -13.3 CoB--CoM heterodisulfide reductase subunit B compare
MMJJ_RS08480 -2.8 -7.2 hydroxyethylthiazole kinase compare
MMJJ_RS07660 -2.8 -7.8 carbonic anhydrase compare
MMJJ_RS01360 -2.8 -0.8 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
MMJJ_RS01500 -2.8 -6.5 transcriptional regulator compare
MMJJ_RS03650 -2.8 -5.7 class I SAM-dependent methyltransferase family protein compare
MMJJ_RS07650 -2.8 -13.6 formate/nitrite transporter family protein compare
MMJJ_RS07655 -2.8 -14.6 hypothetical protein compare
MMJJ_RS08405 -2.8 -9.8 nickel-dependent hydrogenase large subunit compare
MMJJ_RS05540 -2.8 -15.1 LysR family transcriptional regulator compare
MMJJ_RS06930 -2.8 -1.3 type II methionyl aminopeptidase compare
MMJJ_RS01810 -2.8 -1.1 methyl coenzyme M reductase system, component A2 compare
MMJJ_RS03225 -2.8 -1.4 4Fe-4S binding protein compare
MMJJ_RS05225 -2.8 -0.6 Gar1/Naf1 family protein compare
MMJJ_RS04150 -2.7 -1.2 DUF5379 domain-containing protein compare
MMJJ_RS08925 -2.7 -9.2 winged helix-turn-helix transcriptional regulator compare
MMJJ_RS05590 -2.7 -0.9 homoserine dehydrogenase compare
MMJJ_RS08250 -2.7 -4.3 hydrogenase maturation peptidase HycI compare
MMJJ_RS07970 -2.7 -1.0 O-phospho-L-seryl-tRNA:Cys-tRNA synthase compare
MMJJ_RS06180 -2.7 -0.9 tryptophan--tRNA ligase compare
MMJJ_RS07945 -2.7 -1.7 4Fe-4S binding protein compare
MMJJ_RS08080 -2.7 -7.4 TIGR00300 family protein compare
MMJJ_RS00080 -2.7 -7.9 DUF166 domain-containing protein compare
MMJJ_RS04730 -2.7 -1.2 tyrosine decarboxylase MfnA compare
MMJJ_RS07670 -2.7 -12.6 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C-terminal domain compare
MMJJ_RS00570 -2.7 -0.9 ribonuclease P compare
MMJJ_RS04980 -2.7 -2.7 bifunctional precorrin-2 dehydrogenase/sirohydrochlorin ferrochelatase compare
MMJJ_RS06915 -2.7 -10.5 helix-turn-helix domain-containing protein compare
MMJJ_RS04685 -2.7 -7.4 carbamoyltransferase HypF compare
MMJJ_RS08035 -2.7 -5.2 cobalt-precorrin-7 (C(5))-methyltransferase compare
MMJJ_RS00600 -2.7 -1.7 hydroxymethylbilane synthase compare
MMJJ_RS07785 -2.7 -1.2 fumarate reductase subunit A compare
MMJJ_RS06175 -2.7 -1.0 DUF1743 domain-containing protein compare
MMJJ_RS07585 -2.6 -8.6 DHH family phosphoesterase compare
MMJJ_RS05110 -2.6 -13.9 ammonium transporter conserved
MMJJ_RS07350 -2.6 -1.2 4Fe-4S binding protein compare
MMJJ_RS04970 -2.6 -0.9 DUF655 domain-containing protein compare
MMJJ_RS05535 -2.6 -9.6 hypothetical protein compare
MMJJ_RS06390 -2.6 -0.8 NADPH-dependent F420 reductase compare
MMJJ_RS04110 -2.6 -5.4 hypothetical protein compare
MMJJ_RS08005 -2.6 -11.1 formate dehydrogenase accessory sulfurtransferase FdhD compare
MMJJ_RS06155 -2.6 -3.2 phosphatidylglycerophosphatase A compare
MMJJ_RS05950 -2.6 -1.3 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase compare
MMJJ_RS07160 -2.5 -13.9 M20 family metallo-hydrolase compare
MMJJ_RS06490 -2.5 -1.1 methanogenesis marker 2 protein compare
MMJJ_RS03865 -2.5 -0.5 phosphoribosyl-AMP cyclohydrolase compare
MMJJ_RS06015 -2.5 -6.3 Na(+)/H(+) antiporter subunit B compare
MMJJ_RS03125 -2.5 -2.4 GMC oxidoreductase compare
MMJJ_RS04155 -2.5 -5.1 hypothetical protein compare
MMJJ_RS08625 -2.5 -4.4 magnesium/cobalt transporter CorA compare
MMJJ_RS04145 -2.5 -6.3 glutamate-1-semialdehyde 2,1-aminomutase compare
MMJJ_RS08915 -2.5 -6.6 CoB--CoM heterodisulfide reductase subunit C compare
MMJJ_RS06260 -2.5 -3.9 6-carboxyhexanoate--CoA ligase compare
MMJJ_RS08785 -2.5 -7.3 D-sedoheptulose 7-phosphate isomerase compare
MMJJ_RS06755 -2.5 -11.5 diadenylate cyclase compare
MMJJ_RS04675 -2.4 -5.4 thiamine pyrophosphate-binding protein compare
MMJJ_RS07995 -2.4 -4.2 molybdenum cofactor biosynthesis protein MoaE compare
MMJJ_RS05810 -2.4 -4.5 precorrin-4 C(11)-methyltransferase compare
MMJJ_RS03815 -2.4 -1.1 nascent polypeptide-associated complex protein compare
MMJJ_RS06035 -2.4 -7.5 NADH-quinone oxidoreductase subunit B family protein compare
MMJJ_RS06220 -2.4 -3.0 polyamine aminopropyltransferase compare
MMJJ_RS05380 -2.4 -0.6 hypothetical protein compare
MMJJ_RS06925 -2.4 -0.9 GMP synthase subunit A compare
MMJJ_RS07485 -2.4 -7.0 DedA family protein compare
MMJJ_RS04875 -2.4 -0.7 tRNA-Lys compare
MMJJ_RS06270 -2.4 -4.6 dethiobiotin synthase compare
MMJJ_RS08765 -2.4 -11.8 glycosyltransferase family 9 protein compare
MMJJ_RS06910 -2.3 -1.2 energy-converting NiFe hydrogenase A subunit EhaA compare
MMJJ_RS07980 -2.3 -9.1 biotin synthase BioB compare
MMJJ_RS01415 -2.3 -1.3 beta-CASP ribonuclease aCPSF1 compare
MMJJ_RS07155 -2.3 -7.6 [5-(aminomethyl)furan-3-yl]methyl phosphate kinase compare
MMJJ_RS06395 -2.3 -8.1 sugar phosphate isomerase/epimerase compare
MMJJ_RS01765 -2.3 -5.8 winged helix-turn-helix domain-containing protein compare
MMJJ_RS07370 -2.3 -2.8 tRNA 4-thiouridine(8) synthase ThiI compare
MMJJ_RS03170 -2.3 -5.3 DUF5612 domain-containing protein compare
MMJJ_RS03840 -2.3 -2.4 DHH family phosphoesterase compare
MMJJ_RS05370 -2.3 -5.2 LysR family transcriptional regulator compare
MMJJ_RS06020 -2.3 -3.3 hypothetical protein compare
MMJJ_RS06835 -2.3 -9.2 4Fe-4S binding protein compare
MMJJ_RS06025 -2.3 -9.9 4Fe-4S binding protein compare
MMJJ_RS03150 -2.3 -4.1 2-phospho-L-lactate transferase compare
MMJJ_RS06725 -2.3 -5.9 MogA/MoaB family molybdenum cofactor biosynthesis protein compare
MMJJ_RS06400 -2.3 -3.2 FumA C-terminus/TtdB family hydratase beta subunit compare
MMJJ_RS06750 -2.3 -0.8 homoaconitase large subunit compare
MMJJ_RS01755 -2.3 -1.0 ferrous iron transport protein B compare
MMJJ_RS03500 -2.3 -9.9 F420-dependent methylenetetrahydromethanopterin dehydrogenase compare
MMJJ_RS06005 -2.2 -6.2 energy conserving hydrogenase EhbF compare
MMJJ_RS07355 -2.2 -3.9 MoaD/ThiS family protein compare
MMJJ_RS06510 -2.2 -1.2 LL-diaminopimelate aminotransferase compare
MMJJ_RS04595 -2.2 -2.7 hypothetical protein compare
MMJJ_RS05360 -2.2 -4.3 nickel-responsive transcriptional regulator NikR compare
MMJJ_RS06700 -2.2 -2.6 L-seryl-tRNA(Sec) kinase compare


Specific Phenotypes

For 17 genes in this experiment

For nitrogen source Adenosine in Methanococcus maripaludis JJ

For nitrogen source Adenosine across organisms