Experiment set4IT010 for Rhodanobacter denitrificans FW104-10B01

Compare to:

R2A with Magnesium sulfate 3.90625 mM

200 most important genes:

  gene name fitness t score description  
LRK54_RS02445 -4.9 -3.3 membrane protein insertion efficiency factor YidD compare
LRK54_RS14670 -4.2 -2.9 NrsF family protein compare
LRK54_RS05735 -4.1 -9.5 maleylacetoacetate isomerase compare
LRK54_RS02275 -3.9 -2.7 enoyl-CoA hydratase-related protein compare
LRK54_RS12855 -3.9 -2.7 PTS fructose transporter subunit IIA compare
LRK54_RS14590 -3.9 -2.7 N-acetylmuramoyl-L-alanine amidase compare
LRK54_RS14695 -3.9 -4.6 rhomboid family intramembrane serine protease compare
LRK54_RS12975 -3.7 -3.6 hemolysin family protein compare
LRK54_RS06755 -3.7 -15.0 LTA synthase family protein compare
LRK54_RS05765 -3.7 -9.8 fructose-bisphosphate aldolase class I compare
LRK54_RS04365 -3.7 -2.3 H-NS histone family protein compare
LRK54_RS16720 -3.7 -6.1 trigger factor compare
LRK54_RS10185 -3.6 -16.6 RDD family protein compare
LRK54_RS00620 -3.6 -4.3 FtsH protease activity modulator HflK compare
LRK54_RS11710 -3.6 -11.0 cytochrome ubiquinol oxidase subunit I compare
LRK54_RS12190 -3.6 -6.8 16S rRNA (cytidine(1402)-2'-O)-methyltransferase compare
LRK54_RS16615 -3.6 -2.4 phosphopyruvate hydratase compare
LRK54_RS06885 -3.6 -4.2 rhodanese-like domain-containing protein compare
LRK54_RS11385 -3.6 -2.4 co-chaperone DjlA compare
LRK54_RS12580 -3.5 -3.4 hypothetical protein compare
LRK54_RS10150 -3.5 -2.4 DNA topoisomerase I compare
LRK54_RS00705 -3.5 -6.3 alkyl hydroperoxide reductase subunit C compare
LRK54_RS16600 -3.5 -11.7 aminopeptidase P family protein compare
LRK54_RS08585 -3.5 -14.9 RimK family alpha-L-glutamate ligase compare
LRK54_RS05740 -3.5 -5.8 phosphoglycerate kinase compare
LRK54_RS00440 -3.4 -3.4 high frequency lysogenization protein HflD compare
LRK54_RS15265 -3.4 -11.3 acetyl-CoA C-acyltransferase compare
LRK54_RS02285 -3.4 -9.3 hydroxymethylglutaryl-CoA lyase compare
LRK54_RS07300 -3.4 -18.7 TonB-dependent receptor compare
LRK54_RS13710 -3.4 -7.2 CBS domain-containing protein compare
LRK54_RS12860 -3.4 -3.3 RNase adapter RapZ compare
LRK54_RS16660 -3.4 -4.6 VTT domain-containing protein compare
LRK54_RS12590 -3.4 -4.6 molybdopterin-dependent oxidoreductase compare
LRK54_RS02495 -3.4 -4.0 50S ribosomal protein L19 compare
LRK54_RS04350 -3.4 -3.3 phosphatidylcholine/phosphatidylserine synthase compare
LRK54_RS00690 -3.4 -8.7 2-methylcitrate synthase compare
LRK54_RS04585 -3.3 -3.9 muramoyltetrapeptide carboxypeptidase compare
LRK54_RS09805 -3.3 -3.2 2,3-diphosphoglycerate-dependent phosphoglycerate mutase compare
LRK54_RS13830 -3.3 -6.3 SDR family NAD(P)-dependent oxidoreductase compare
LRK54_RS02895 -3.2 -4.4 rhomboid family intramembrane serine protease compare
LRK54_RS06675 -3.2 -6.1 TetR/AcrR family transcriptional regulator compare
LRK54_RS04720 -3.2 -5.7 phosphoribosylformylglycinamidine synthase compare
LRK54_RS00615 -3.2 -4.9 protease modulator HflC compare
LRK54_RS03895 -3.2 -11.4 lipopolysaccharide biosynthesis protein compare
LRK54_RS02440 -3.1 -2.1 RNA polymerase-binding protein DksA compare
LRK54_RS16110 -3.1 -13.0 polyhydroxyalkanoate synthesis repressor PhaR compare
LRK54_RS16940 -3.1 -2.1 RNA polymerase sigma factor RpoE compare
LRK54_RS06685 -3.1 -17.5 TolC family outer membrane protein compare
LRK54_RS16875 -3.1 -14.8 kinase/pyrophosphorylase compare
LRK54_RS06610 -3.1 -18.5 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
LRK54_RS03110 -3.1 -9.4 nucleotidyltransferase family protein compare
LRK54_RS16665 -3.1 -8.8 peptidoglycan DD-metalloendopeptidase family protein compare
LRK54_RS12305 -3.0 -11.1 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
LRK54_RS12865 -3.0 -5.0 HPr(Ser) kinase/phosphatase compare
LRK54_RS00085 -3.0 -2.1 tetratricopeptide repeat protein compare
LRK54_RS06470 -3.0 -6.4 carboxy terminal-processing peptidase compare
LRK54_RS14825 -3.0 -2.9 protease HtpX compare
LRK54_RS02050 -3.0 -11.6 thiamine pyrophosphate-dependent enzyme compare
LRK54_RS11700 -3.0 -4.0 cytochrome bd-I oxidase subunit CydX compare
LRK54_RS02325 -3.0 -2.9 SDR family oxidoreductase compare
LRK54_RS11375 -3.0 -7.4 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
LRK54_RS02460 -3.0 -8.7 phosphoglycolate phosphatase compare
LRK54_RS11705 -3.0 -13.1 cytochrome d ubiquinol oxidase subunit II compare
LRK54_RS11170 -3.0 -2.9 NADP-dependent malic enzyme compare
LRK54_RS16155 -3.0 -2.8 folate-binding protein compare
LRK54_RS10790 -2.9 -12.3 AI-2E family transporter compare
LRK54_RS12945 -2.9 -10.8 phosphoribosylformylglycinamidine cyclo-ligase compare
LRK54_RS13760 -2.9 -7.8 trypsin-like peptidase domain-containing protein compare
LRK54_RS11975 -2.9 -3.4 SLC13 family permease compare
LRK54_RS05785 -2.9 -7.8 type I glyceraldehyde-3-phosphate dehydrogenase compare
LRK54_RS05630 -2.9 -6.3 D-sedoheptulose 7-phosphate isomerase compare
LRK54_RS09000 -2.8 -12.5 HAMP domain-containing histidine kinase compare
LRK54_RS08595 -2.8 -9.3 shikimate dehydrogenase compare
LRK54_RS12295 -2.8 -4.6 symmetrical bis(5'-nucleosyl)-tetraphosphatase compare
LRK54_RS10855 -2.8 -3.3 protein-export chaperone SecB compare
LRK54_RS15035 -2.7 -3.3 M48 family metalloprotease compare
LRK54_RS13910 -2.7 -6.7 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabA compare
LRK54_RS02090 -2.7 -6.8 NAD-glutamate dehydrogenase compare
LRK54_RS00345 -2.7 -4.8 TraB/GumN family protein compare
LRK54_RS12670 -2.7 -1.9 glycosyltransferase compare
LRK54_RS02535 -2.7 -4.8 50S ribosomal protein L9 compare
LRK54_RS05415 -2.7 -7.6 TetR/AcrR family transcriptional regulator compare
LRK54_RS10065 -2.7 -3.6 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase compare
LRK54_RS00815 -2.7 -4.4 pseudouridine synthase compare
LRK54_RS12460 -2.6 -2.5 hypothetical protein compare
LRK54_RS07215 -2.6 -4.9 cytochrome c4 compare
LRK54_RS00675 -2.6 -5.2 bifunctional 2-methylcitrate dehydratase/aconitate hydratase compare
LRK54_RS13085 -2.6 -14.1 alpha-glucosidase family protein compare
LRK54_RS01285 -2.6 -3.0 3-deoxy-D-manno-octulosonic acid kinase compare
LRK54_RS08520 -2.6 -17.1 ATP-dependent protease ATPase subunit HslU compare
LRK54_RS15020 -2.6 -16.6 polyphosphate kinase 1 compare
LRK54_RS10950 -2.6 -12.1 S41 family peptidase compare
LRK54_RS11765 -2.5 -9.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
LRK54_RS03710 -2.5 -8.2 tetratricopeptide repeat protein compare
LRK54_RS03925 -2.5 -12.3 glycosyltransferase family 4 protein compare
LRK54_RS05985 -2.5 -1.7 response regulator transcription factor compare
LRK54_RS03405 -2.5 -8.5 ribonuclease G compare
LRK54_RS15935 -2.5 -9.4 rRNA pseudouridine synthase compare
LRK54_RS12300 -2.5 -6.1 Co2+/Mg2+ efflux protein ApaG compare
LRK54_RS03290 -2.5 -1.7 RIP metalloprotease RseP compare
LRK54_RS06795 -2.5 -7.5 type II 3-dehydroquinate dehydratase compare
LRK54_RS04035 -2.5 -7.8 ATP-binding protein compare
LRK54_RS18050 -2.4 -13.0 lipopolysaccharide assembly protein LapB compare
LRK54_RS04025 -2.4 -1.2 diacylglycerol kinase compare
LRK54_RS11290 -2.4 -2.3 dihydrolipoyllysine-residue acetyltransferase compare
LRK54_RS05615 -2.4 -12.3 hypothetical protein compare
LRK54_RS05610 -2.4 -9.5 GtrA family protein compare
LRK54_RS12595 -2.3 -2.3 (2Fe-2S)-binding protein compare
LRK54_RS17270 -2.3 -1.6 DNA translocase FtsK compare
LRK54_RS05530 -2.3 -1.6 electron transfer flavoprotein-ubiquinone oxidoreductase compare
LRK54_RS13915 -2.3 -15.3 beta-ketoacyl-ACP synthase I compare
LRK54_RS04710 -2.3 -3.8 glycosyltransferase family 2 protein compare
LRK54_RS17215 -2.3 -1.6 cytochrome-c oxidase, cbb3-type subunit III compare
LRK54_RS09125 -2.3 -4.8 hypothetical protein compare
LRK54_RS03130 -2.3 -8.2 tRNA guanosine(34) transglycosylase Tgt compare
LRK54_RS05650 -2.3 -2.2 ABC transporter ATP-binding protein compare
LRK54_RS05200 -2.3 -3.7 hypothetical protein compare
LRK54_RS05655 -2.3 -1.6 ABC transporter permease compare
LRK54_RS11770 -2.3 -14.1 outer membrane lipid asymmetry maintenance protein MlaD compare
LRK54_RS00635 -2.2 -1.5 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
LRK54_RS16650 -2.2 -7.9 5'/3'-nucleotidase SurE compare
LRK54_RS02855 -2.2 -4.0 type I restriction-modification system subunit M compare
LRK54_RS16755 -2.2 -3.7 SurA N-terminal domain-containing protein compare
LRK54_RS06820 -2.2 -3.0 Fis family transcriptional regulator compare
LRK54_RS02550 -2.2 -4.1 iron-sulfur cluster assembly accessory protein compare
LRK54_RS18055 -2.2 -5.2 glycosyltransferase family 4 protein compare
LRK54_RS10640 -2.2 -5.4 SCP2 sterol-binding domain-containing protein compare
LRK54_RS06910 -2.2 -13.3 glutathionylspermidine synthase family protein compare
LRK54_RS16730 -2.2 -2.1 ATP-dependent Clp protease ATP-binding subunit ClpX compare
LRK54_RS06720 -2.2 -12.1 glycosyltransferase compare
LRK54_RS00320 -2.1 -2.9 phosphoglycerate mutase compare
LRK54_RS02070 -2.1 -2.9 acyl-CoA dehydrogenase family protein compare
LRK54_RS00670 -2.1 -5.3 OmpA family protein compare
LRK54_RS03125 -2.1 -1.5 preprotein translocase subunit YajC compare
LRK54_RS05980 -2.1 -1.5 ATP-binding protein compare
LRK54_RS16735 -2.1 -13.0 endopeptidase La compare
LRK54_RS11785 -2.1 -13.3 VacJ family lipoprotein compare
LRK54_RS03200 -2.1 -8.4 integration host factor subunit alpha compare
LRK54_RS04920 -2.1 -7.9 YebC/PmpR family DNA-binding transcriptional regulator compare
LRK54_RS12005 -2.1 -8.9 30S ribosomal protein S6--L-glutamate ligase compare
LRK54_RS05550 -2.1 -1.4 FAD-binding protein compare
LRK54_RS11175 -2.1 -7.1 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
LRK54_RS00695 -2.1 -2.8 methylisocitrate lyase compare
LRK54_RS00805 -2.1 -3.9 segregation/condensation protein A compare
LRK54_RS06905 -2.1 -10.5 DUF1190 domain-containing protein compare
LRK54_RS11760 -2.0 -11.0 ATP-binding cassette domain-containing protein compare
LRK54_RS06495 -2.0 -13.7 septal ring lytic transglycosylase RlpA family protein compare
LRK54_RS07980 -2.0 -2.7 nitrogen regulation protein NR(I) compare
LRK54_RS00680 -2.0 -11.5 TerC family protein compare
LRK54_RS17505 -2.0 -3.2 preprotein translocase subunit SecG compare
LRK54_RS05540 -2.0 -4.2 glycosyltransferase family 2 protein compare
LRK54_RS07775 -2.0 -4.2 MarR family transcriptional regulator compare
LRK54_RS07735 -2.0 -10.3 metalloregulator ArsR/SmtB family transcription factor compare
LRK54_RS08750 -2.0 -3.8 phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) compare
LRK54_RS08930 -1.9 -5.5 XRE family transcriptional regulator compare
LRK54_RS18060 -1.9 -4.5 polysaccharide biosynthesis protein compare
LRK54_RS05665 -1.9 -5.5 dTDP-glucose 4,6-dehydratase compare
LRK54_RS15095 -1.9 -7.2 ferredoxin family protein compare
LRK54_RS05495 -1.9 -5.2 met regulon transcriptional regulator MetJ compare
LRK54_RS16655 -1.9 -3.4 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
LRK54_RS02335 -1.8 -8.0 FUSC family protein compare
LRK54_RS04340 -1.8 -7.5 ribosomal protein S18-alanine N-acetyltransferase compare
LRK54_RS12830 -1.8 -5.7 YeiH family protein compare
LRK54_RS09250 -1.8 -15.0 rhomboid family intramembrane serine protease compare
LRK54_RS04630 -1.8 -1.2 energy-dependent translational throttle protein EttA compare
LRK54_RS08760 -1.8 -3.3 transaldolase compare
LRK54_RS03745 -1.8 -8.1 NAD(P)H:quinone oxidoreductase compare
LRK54_RS05535 -1.8 -5.7 glycosyltransferase family 2 protein compare
LRK54_RS08305 -1.8 -13.4 alpha/beta fold hydrolase compare
LRK54_RS01685 -1.8 -10.9 tryptophan synthase subunit beta compare
LRK54_RS01410 -1.8 -12.7 ABC transporter ATP-binding protein/permease compare
LRK54_RS06210 -1.7 -2.9 hypothetical protein compare
LRK54_RS13780 -1.7 -6.8 glutathione S-transferase N-terminal domain-containing protein compare
LRK54_RS04305 -1.7 -3.2 shikimate kinase compare
LRK54_RS12875 -1.7 -8.4 RNA polymerase factor sigma-54 compare
LRK54_RS09720 -1.7 -12.1 pteridine-dependent deoxygenase compare
LRK54_RS01015 -1.7 -13.3 class III poly(R)-hydroxyalkanoic acid synthase subunit PhaC compare
LRK54_RS16865 -1.7 -7.9 protein phosphatase 2C domain-containing protein compare
LRK54_RS17225 -1.7 -1.7 cytochrome-c oxidase, cbb3-type subunit II compare
LRK54_RS17905 -1.7 -2.2 NfuA family Fe-S biogenesis protein compare
LRK54_RS07220 -1.7 -7.2 thiol:disulfide interchange protein DsbA/DsbL compare
LRK54_RS09910 -1.7 -11.5 NADP-dependent isocitrate dehydrogenase compare
LRK54_RS13340 -1.7 -7.0 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare
LRK54_RS11565 -1.7 -4.2 anthranilate phosphoribosyltransferase compare
LRK54_RS09655 -1.7 -4.8 6-carboxytetrahydropterin synthase QueD compare
LRK54_RS03930 -1.7 -10.6 glycosyltransferase family 2 protein compare
LRK54_RS10355 -1.6 -3.2 threonine synthase compare
LRK54_RS05670 -1.6 -5.7 glucose-1-phosphate thymidylyltransferase RfbA compare
LRK54_RS10660 -1.6 -1.7 DUF4156 domain-containing protein compare
LRK54_RS16955 -1.6 -10.7 translation elongation factor 4 compare
LRK54_RS01280 -1.6 -1.5 MBL fold metallo-hydrolase compare
LRK54_RS02175 -1.6 -8.2 exodeoxyribonuclease V subunit gamma compare
LRK54_RS17205 -1.6 -2.4 heavy metal translocating P-type ATPase compare
LRK54_RS03675 -1.6 -1.8 redox-regulated ATPase YchF compare
LRK54_RS11775 -1.6 -10.5 ABC transporter substrate-binding protein compare
LRK54_RS03750 -1.6 -6.0 DUF2069 domain-containing protein compare
LRK54_RS03395 -1.6 -13.2 metalloprotease TldD compare
LRK54_RS16240 -1.5 -10.6 formimidoylglutamate deiminase compare
LRK54_RS07310 -1.5 -9.1 pteridine reductase compare
LRK54_RS06810 -1.5 -8.1 50S ribosomal protein L11 methyltransferase compare


Specific Phenotypes

For 2 genes in this experiment

For stress Magnesium sulfate in Rhodanobacter denitrificans FW104-10B01

For stress Magnesium sulfate across organisms