Experiment set4IT010 for Methanococcus maripaludis S2

Compare to:

H2 deepwell vitamin and casamino acid FREE

200 most important genes:

  gene name fitness t score description  
MMP_RS07005 -3.8 -0.9 4Fe-4S binding protein compare
MMP_RS03315 -3.2 -1.9 ferrous iron transport protein A compare
MMP_RS07845 -3.2 -3.0 LL-diaminopimelate aminotransferase compare
MMP_RS03450 -3.0 -3.6 glycine synthesis protein GlyXS (from data) compare
MMP_RS06400 -3.0 -2.3 4Fe-4S binding protein compare
MMP_RS07345 -2.9 -8.0 glycine synthesis protein GlyXL (from data) compare
MMP_RS05500 -2.7 -10.3 2-isopropylmalate synthase compare
MMP_RS05515 -2.7 -9.0 cyclic pyranopterin monophosphate synthase MoaC compare
MMP_RS07735 -2.7 -1.1 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha compare
MMP_RS03435 -2.6 -2.2 ketol-acid reductoisomerase compare
MMP_RS01005 -2.6 -2.1 riboflavin synthase compare
MMP_RS04605 -2.5 -6.1 cobalt ECF transporter T component CbiQ compare
MMP_RS01545 -2.4 -1.6 CBS domain-containing protein compare
MMP_RS01455 -2.4 -9.8 nickel pincer cofactor biosynthesis protein LarC compare
MMP_RS01175 -2.4 -5.8 triphosphoribosyl-dephospho-CoA synthase compare
MMP_RS04890 -2.4 -1.1 adenylyltransferase/cytidyltransferase family protein compare
MMP_RS09020 -2.3 -2.0 hypothetical protein compare
MMP_RS07755 -2.3 -1.4 DUF555 domain-containing protein compare
MMP_RS04615 -2.2 -4.8 PDGLE domain-containing protein compare
MMP_RS00515 -2.2 -1.3 DUF655 domain-containing protein compare
MMP_RS08210 -2.1 -3.1 phosphatidylglycerophosphatase A compare
MMP_RS06355 -2.1 -3.5 molybdenum cofactor biosynthesis protein MoaE compare
MMP_RS08720 -2.1 -2.1 4Fe-4S binding protein compare
MMP_RS08745 -2.1 -7.6 CDP-2 3-bis-(O-geranylgeranyl)-sn-glycerol synthase compare
MMP_RS03035 -2.1 -4.4 4-hydroxy-tetrahydrodipicolinate synthase compare
MMP_RS04500 -2.0 -13.5 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
MMP_RS02280 -2.0 -1.1 DUF211 domain-containing protein compare
MMP_RS06350 -2.0 -7.4 HesA/MoeB/ThiF family protein compare
MMP_RS03015 -1.9 -10.4 GTP 3' 8-cyclase MoaA compare
MMP_RS04620 -1.9 -13.2 cobalt transporter CbiM compare
MMP_RS02355 -1.9 -2.9 30S ribosomal protein S27ae compare
MMP_RS08330 -1.9 -7.1 NADH-quinone oxidoreductase subunit H compare
MMP_RS00300 -1.9 -0.8 6 7-dimethyl-8-ribityllumazine synthase compare
MMP_RS01020 -1.9 -1.2 3 4-dihydroxy-2-butanone-4-phosphate synthase compare
MMP_RS06270 -1.8 -6.4 TIGR00300 family protein compare
MMP_RS02135 -1.8 -6.8 DUF5612 domain-containing protein compare
MMP_RS07545 -1.8 -1.3 HTH domain-containing protein compare
MMP_RS04215 -1.8 -8.8 nickel pincer cofactor biosynthesis protein LarB compare
MMP_RS04685 -1.8 -4.0 DUF126 domain-containing protein compare
MMP_RS07185 -1.7 -11.4 pyridoxal phosphate-dependent aminotransferase compare
MMP_RS07630 -1.7 -1.4 ATP-binding cassette domain-containing protein compare
MMP_RS06370 -1.7 -6.0 biotin synthase BioB compare
MMP_RS05555 -1.7 -1.6 DUF4040 domain-containing protein compare
MMP_RS07555 -1.7 -0.9 monovalent cation/H+ antiporter subunit E compare
MMP_RS08095 -1.7 -7.7 dethiobiotin synthase compare
MMP_RS05425 -1.7 -4.4 monovalent cation/H+ antiporter complex subunit F compare
MMP_RS01225 -1.7 -4.5 DUF5379 domain-containing protein compare
MMP_RS07635 -1.7 -5.5 MogA/MoaB family molybdenum cofactor biosynthesis protein compare
MMP_RS02240 -1.7 -3.6 methanogenesis marker 7 protein compare
MMP_RS08100 -1.6 -6.9 8-amino-7-oxononanoate synthase compare
MMP_RS08635 -1.6 -1.9 UbiA family prenyltransferase compare
MMP_RS01830 -1.6 -2.0 tRNA-Val compare
MMP_RS08790 -1.6 -2.1 translation initiation factor IF-2 subunit alpha compare
MMP_RS04790 -1.6 -11.4 4-hydroxy-tetrahydrodipicolinate reductase compare
MMP_RS05930 -1.6 -2.7 3-isopropylmalate dehydratase large subunit compare
MMP_RS02010 -1.6 -7.4 PHP domain-containing protein compare
MMP_RS00685 -1.6 -3.7 2-phospho-L-lactate guanylyltransferase compare
MMP_RS08165 -1.6 -3.0 phosphoglycerate dehydrogenase compare
MMP_RS06375 -1.6 -6.1 ATP-dependent sacrificial sulfur transferase LarE compare
MMP_RS03390 -1.6 -7.0 malate dehydrogenase compare
MMP_RS06120 -1.5 -2.2 UPF0147 family protein compare
MMP_RS07645 -1.5 -5.6 aldehyde dehydrogenase family protein compare
MMP_RS08105 -1.5 -7.1 6-carboxyhexanoate--CoA ligase compare
MMP_RS07730 -1.5 -1.9 pyruvate synthase subunit beta compare
MMP_RS00735 -1.5 -4.1 5 10-methenyltetrahydromethanopterin hydrogenase compare
MMP_RS04875 -1.5 -4.5 energy-converting hydrogenase B subunit P compare
MMP_RS03205 -1.5 -1.5 peptidyl-tRNA hydrolase Pth2 compare
MMP_RS02885 -1.5 -11.4 molybdopterin biosynthesis protein compare
MMP_RS03250 -1.5 -3.7 MJ1244 family protein compare
MMP_RS07955 -1.5 -4.8 FumA C-terminus/TtdB family hydratase beta subunit compare
MMP_RS01220 -1.5 -6.9 hypothetical protein compare
MMP_RS07575 -1.5 -3.8 RNA ligase partner protein compare
MMP_RS04780 -1.5 -3.5 ribonuclease P compare
MMP_RS02195 -1.4 -3.1 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-methylthiotransferase compare
MMP_RS02800 -1.4 -4.2 nucleotidyltransferase domain-containing protein compare
MMP_RS02805 -1.4 -1.6 HEPN domain-containing protein compare
MMP_RS03640 -1.4 -4.5 archaeal proteasome endopeptidase complex subunit beta compare
MMP_RS02235 -1.4 -9.0 CBS domain-containing protein compare
MMP_RS01500 -1.4 -1.9 CBS domain-containing protein compare
MMP_RS06895 -1.4 -2.3 selenocysteine-specific translation elongation factor compare
MMP_RS06730 -1.4 -1.8 phosphopantothenate/pantothenate synthetase compare
MMP_RS06105 -1.4 -6.6 hydrogenase maturation peptidase HycI compare
MMP_RS00130 -1.4 -1.4 nickel-responsive transcriptional regulator NikR compare
MMP_RS07355 -1.4 -1.1 transcription factor S compare
MMP_RS07195 -1.4 -7.9 M20 family metallo-hydrolase compare
MMP_RS08715 -1.3 -2.0 formylmethanofuran dehydrogenase subunit B compare
MMP_RS03600 -1.3 -2.1 triose-phosphate isomerase compare
MMP_RS06340 -1.3 -6.7 phosphoadenosine phosphosulfate reductase family protein compare
MMP_RS05265 -1.3 -1.6 2-isopropylmalate synthase compare
MMP_RS00750 -1.3 -2.0 fumarate hydratase compare
MMP_RS03145 -1.3 -4.1 fibrillarin-like rRNA/tRNA 2'-O-methyltransferase compare
MMP_RS06285 -1.3 -2.5 precorrin-6Y C5 15-methyltransferase (decarboxylating) subunit CbiT compare
MMP_RS02900 -1.3 -0.7 imidazoleglycerol-phosphate dehydratase HisB compare
MMP_RS05950 -1.3 -7.8 nickel-dependent hydrogenase large subunit compare
MMP_RS01610 -1.3 -3.3 hypothetical protein compare
MMP_RS07750 -1.3 -3.4 DUF357 domain-containing protein compare
MMP_RS03700 -1.3 -6.0 sodium:proton antiporter compare
MMP_RS06295 -1.3 -5.6 methanogenesis marker 14 protein compare
MMP_RS01755 -1.3 -1.0 DUF2097 domain-containing protein compare
MMP_RS06700 -1.3 -8.6 hypothetical protein compare
MMP_RS06130 -1.2 -3.7 peptidylprolyl isomerase compare
MMP_RS01385 -1.2 -0.6 imidazole glycerol phosphate synthase subunit HisH compare
MMP_RS00895 -1.2 -3.9 hypothetical protein compare
MMP_RS06975 -1.2 -2.2 sulfide-dependent adenosine diphosphate thiazole synthase compare
MMP_RS06925 -1.2 -2.2 ribonuclease VapC4 compare
MMP_RS01265 -1.2 -2.2 hypothetical protein compare
MMP_RS08760 -1.2 -1.9 hypothetical protein compare
MMP_RS06680 -1.2 -6.6 Coenzyme F420 hydrogenase/dehydrogenase beta subunit C-terminal domain compare
MMP_RS08320 -1.2 -4.8 molybdopterin molybdotransferase MoeA compare
MMP_RS07725 -1.2 -3.1 4Fe-4S dicluster domain-containing protein compare
MMP_RS06625 -1.2 -2.1 DNA primase compare
MMP_RS00810 -1.2 -6.4 topoisomerase DNA-binding C4 zinc finger domain-containing protein compare
MMP_RS02875 -1.2 -6.4 chorismate pyruvate-lyase family protein compare
MMP_RS06485 -1.2 -1.0 zinc ribbon domain-containing protein compare
MMP_RS07350 -1.2 -1.6 preprotein translocase subunit Sec61beta compare
MMP_RS03025 -1.1 -3.8 molybdenum cofactor guanylyltransferase compare
MMP_RS05315 -1.1 -1.9 hypothetical protein compare
MMP_RS03960 -1.1 -0.8 hypothetical protein compare
MMP_RS08345 -1.1 -6.6 4Fe-4S binding protein compare
MMP_RS05540 -1.1 -3.0 hypothetical protein compare
MMP_RS07540 -1.1 -4.1 CBS domain-containing protein compare
MMP_RS08355 -1.1 -5.6 Na(+)/H(+) antiporter subunit B compare
MMP_RS07600 -1.1 -2.3 Ni-sirohydrochlorin a c-diamide synthase compare
MMP_RS06345 -1.1 -5.5 formate dehydrogenase accessory sulfurtransferase FdhD compare
MMP_RS03095 -1.0 -5.2 diphthine synthase compare
MMP_RS01665 -1.0 -3.0 DUF2111 domain-containing protein compare
MMP_RS02345 -1.0 -2.0 GTP-dependent dephospho-CoA kinase family protein compare
MMP_RS01380 -1.0 -3.0 PHP domain-containing protein compare
MMP_RS08335 -1.0 -5.1 NADH-quinone oxidoreductase subunit B family protein compare
MMP_RS04775 -1.0 -2.4 adenosylhomocysteinase compare
MMP_RS05925 -1.0 -2.2 small nuclear ribonucleoprotein compare
MMP_RS01840 -1.0 -6.3 TIGR00289 family protein compare
MMP_RS02045 -1.0 -1.5 tRNA-Met compare
MMP_RS04710 -1.0 -1.0 hypothetical protein compare
MMP_RS03155 -1.0 -4.7 precorrin-6A reductase compare
MMP_RS08350 -1.0 -0.9 hypothetical protein compare
MMP_RS07075 -1.0 -2.9 phosphomannomutase/phosphoglucomutase compare
MMP_RS07710 -0.9 -4.8 cell division protein FtsZ compare
MMP_RS06020 -0.9 -2.7 archaeoflavoprotein AfpA compare
MMP_RS04585 -0.9 -5.3 AIR synthase related protein compare
MMP_RS05430 -0.9 -3.5 TIGR00288 family NYN domain-containing protein compare
MMP_RS04785 -0.9 -6.8 hypothetical protein compare
MMP_RS01800 -0.9 -2.7 TIGR00303 family protein compare
MMP_RS06865 -0.9 -2.5 HypC/HybG/HupF family hydrogenase formation chaperone compare
MMP_RS03550 -0.9 -1.9 DUF2124 domain-containing protein compare
MMP_RS05875 -0.9 -3.3 hydroxyethylthiazole kinase compare
MMP_RS00725 -0.9 -4.3 5 10-methenyltetrahydromethanopterin hydrogenase cofactor biosynthesis protein HmdC compare
MMP_RS06670 -0.9 -3.6 glucose-6-phosphate isomerase compare
MMP_RS03580 -0.9 -2.3 signal recognition particle-docking protein FtsY compare
MMP_RS00315 -0.9 -3.9 Nif3-like dinuclear metal center hexameric protein compare
MMP_RS01250 -0.9 -3.4 tRNA (guanine(26)-N(2))-dimethyltransferase compare
MMP_RS06685 -0.9 -5.4 formate dehydrogenase H subunit alpha selenocysteine-containing compare
MMP_RS01795 -0.9 -1.1 methanogenesis marker 6 protein compare
MMP_RS06705 -0.9 -3.2 formate/nitrite transporter family protein compare
MMP_RS06475 -0.8 -2.4 FAD-dependent oxidoreductase compare
MMP_RS00850 -0.8 -2.7 TIGR01177 family methyltransferase compare
MMP_RS03445 -0.8 -0.7 methanogenesis marker 17 protein compare
MMP_RS01195 -0.8 -0.9 metalloregulator ArsR/SmtB family transcription factor compare
MMP_RS08365 -0.8 -2.2 energy conserving hydrogenase EhbF compare
MMP_RS04850 -0.8 -5.9 UPF0254 family protein compare
MMP_RS06725 -0.8 -4.1 hypothetical protein compare
MMP_RS07705 -0.8 -4.7 transcriptional regulator compare
MMP_RS06930 -0.8 -5.6 MBL fold metallo-hydrolase compare
MMP_RS05345 -0.8 -4.7 hypothetical protein compare
MMP_RS08940 -0.8 -0.9 MetS family NSS transporter small subunit compare
MMP_RS00720 -0.8 -3.4 metal-dependent hydrolase compare
MMP_RS00305 -0.8 -1.3 phosphoribosyl-ATP diphosphatase compare
MMP_RS02145 -0.8 -3.7 winged helix-turn-helix transcriptional regulator compare
MMP_RS05845 -0.8 -1.1 tRNA-intron lyase compare
MMP_RS08725 -0.8 -0.8 Ni/Fe hydrogenase subunit alpha compare
MMP_RS00695 -0.8 -0.5 biotin--[acetyl-CoA-carboxylase] ligase compare
MMP_RS01900 -0.8 -5.5 hypothetical protein compare
MMP_RS08645 -0.8 -3.3 UPF0179 family protein compare
MMP_RS00115 -0.7 -4.7 radical SAM protein compare
MMP_RS01325 -0.7 -1.2 dihydroneopterin aldolase family protein compare
MMP_RS02245 -0.7 -1.9 hypothetical protein compare
MMP_RS02175 -0.7 -0.6 DUF1611 domain-containing protein compare
MMP_RS00985 -0.7 -2.5 CDC48 family AAA ATPase compare
MMP_RS08995 -0.7 -1.0 hypothetical protein compare
MMP_RS08820 -0.7 -2.8 hypothetical protein compare
MMP_RS06885 -0.7 -1.7 50S ribosome-binding GTPase compare
MMP_RS05460 -0.7 -5.2 YcaO-related McrA-glycine thioamidation protein compare
MMP_RS03475 -0.7 -0.4 hypothetical protein compare
MMP_RS07200 -0.7 -3.0 [5-(aminomethyl)furan-3-yl]methyl phosphate kinase compare
MMP_RS03400 -0.7 -1.6 archease compare
MMP_RS00730 -0.7 -2.4 5 10-methenyltetrahydromethanopterin hydrogenase cofactor biosynthesis protein HmdB compare
MMP_RS06215 -0.7 -0.8 30S ribosomal protein S6e compare
MMP_RS03140 -0.7 -4.6 hypothetical protein compare
MMP_RS07420 -0.7 -2.5 metalloregulator ArsR/SmtB family transcription factor compare
MMP_RS02935 -0.7 -2.6 A24 family peptidase compare
MMP_RS01925 -0.7 -3.9 DUF1616 domain-containing protein compare
MMP_RS03585 -0.7 -1.6 Hsp20/alpha crystallin family protein compare
MMP_RS04125 -0.7 -2.1 TetR/AcrR family transcriptional regulator compare
MMP_RS05800 -0.7 -4.2 B12-binding domain-containing radical SAM protein compare
MMP_RS07435 -0.7 -1.3 GMP synthase subunit A compare
MMP_RS05640 -0.7 -3.3 UTP--glucose-1-phosphate uridylyltransferase GalU compare
MMP_RS06290 -0.7 -2.7 DNA repair and recombination protein RadA compare
MMP_RS08650 -0.7 -2.1 glutamine--fructose-6-phosphate transaminase (isomerizing) compare
MMP_RS08840 -0.6 -4.5 class I SAM-dependent methyltransferase compare
MMP_RS00110 -0.6 -1.4 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Methanococcus maripaludis S2 in nutrient t1 experiments

For nutrient t1 Sodium acetate across organisms