Experiment set4IT010 for Methanococcus maripaludis JJ

Compare to:

Formate N-free with 2mM Adenosine

200 most important genes:

  gene name fitness t score description  
MMJJ_RS02935 -5.6 -1.7 DNA-directed RNA polymerase subunit E'' compare
MMJJ_RS00070 -5.2 -2.1 CooT family nickel-binding protein compare
MMJJ_RS03055 -5.1 -1.4 hypothetical protein compare
MMJJ_RS00235 -5.0 -20.1 hypothetical protein compare
MMJJ_RS03270 -4.8 -1.2 ribosome biogenesis/translation initiation ATPase RLI compare
MMJJ_RS08855 -4.5 -2.9 cyclic pyranopterin monophosphate synthase MoaC compare
MMJJ_RS03615 -4.4 -1.4 cobalt-precorrin-8 methylmutase compare
MMJJ_RS09095 -4.4 -7.6 MMPL family transporter compare
MMJJ_RS00275 -4.4 -1.2 coenzyme F420-0:L-glutamate ligase compare
MMJJ_RS07950 -4.4 -1.4 4Fe-4S binding protein compare
MMJJ_RS03815 -4.3 -1.0 nascent polypeptide-associated complex protein compare
MMJJ_RS00270 -4.2 -1.4 adenosylcobinamide-GDP ribazoletransferase compare
MMJJ_RS04790 -4.2 -1.5 biotin--[acetyl-CoA-carboxylase] ligase compare
MMJJ_RS00265 -4.2 -5.1 TIGR02253 family HAD-type hydrolase compare
MMJJ_RS06805 -4.2 -1.2 monovalent cation/H+ antiporter subunit E compare
MMJJ_RS03065 -4.1 -13.7 CBS domain-containing protein compare
MMJJ_RS08335 -4.1 -1.0 ABC transporter ATP-binding protein compare
MMJJ_RS01865 -4.1 -3.7 peptidyl-tRNA hydrolase Pth2 compare
MMJJ_RS03620 -4.0 -4.4 DUF2097 domain-containing protein compare
MMJJ_RS05195 -4.0 -4.4 hypothetical protein compare
MMJJ_RS04520 -4.0 -4.1 coenzyme F430 synthase compare
MMJJ_RS04200 -3.9 -4.9 triphosphoribosyl-dephospho-CoA synthase compare
MMJJ_RS03155 -3.9 -11.6 hypothetical protein compare
MMJJ_RS00520 -3.9 -6.3 PDGLE domain-containing protein compare
MMJJ_RS02055 -3.9 -11.4 GTP 3',8-cyclase MoaA compare
MMJJ_RS04485 -3.8 -7.6 riboflavin synthase compare
MMJJ_RS05160 -3.8 -1.8 RNA-binding protein compare
MMJJ_RS08035 -3.8 -5.6 cobalt-precorrin-7 (C(5))-methyltransferase compare
MMJJ_RS00045 -3.8 -14.6 CO dehydrogenase/CO-methylating acetyl-CoA synthase complex subunit beta compare
MMJJ_RS03230 -3.7 -2.4 NAD(P)/FAD-dependent oxidoreductase compare
MMJJ_RS03295 -3.7 -14.0 PHP domain-containing protein compare
MMJJ_RS05450 -3.7 -14.9 TIGR03576 family pyridoxal phosphate-dependent enzyme compare
MMJJ_RS07360 -3.7 -0.8 TIGR00269 family protein compare
MMJJ_RS00075 -3.7 -11.4 AAA family ATPase compare
MMJJ_RS06040 -3.7 -1.9 NADH-quinone oxidoreductase subunit H compare
MMJJ_RS08135 -3.6 -3.7 30S ribosomal protein S6e compare
MMJJ_RS00050 -3.6 -8.7 AAA family ATPase compare
MMJJ_RS05370 -3.6 -8.2 LysR family transcriptional regulator compare
MMJJ_RS02035 -3.6 -4.9 4-hydroxy-tetrahydrodipicolinate synthase compare
MMJJ_RS08020 -3.6 -8.8 nucleotidyltransferase domain-containing protein compare
MMJJ_RS00530 -3.6 -14.3 cobalt ECF transporter T component CbiQ compare
MMJJ_RS03875 -3.6 -2.4 CBS domain-containing protein compare
MMJJ_RS05595 -3.6 -2.0 hypothetical protein compare
MMJJ_RS03995 -3.5 -4.7 PHP domain-containing protein compare
MMJJ_RS00450 -3.5 -0.9 DUF126 domain-containing protein compare
MMJJ_RS08480 -3.5 -8.0 hydroxyethylthiazole kinase compare
MMJJ_RS06880 -3.5 -0.7 EhaG family protein compare
MMJJ_RS03225 -3.5 -1.4 4Fe-4S binding protein compare
MMJJ_RS04970 -3.5 -0.8 DUF655 domain-containing protein compare
MMJJ_RS00060 -3.5 -17.7 acetyl-CoA decarbonylase/synthase complex subunit gamma compare
MMJJ_RS02040 -3.5 -1.2 Asp-tRNA(Asn) amidotransferase subunit GatC compare
MMJJ_RS08320 -3.5 -1.3 CDP-diacylglycerol--serine O-phosphatidyltransferase compare
MMJJ_RS06050 -3.5 -8.3 molybdopterin molybdotransferase MoeA compare
MMJJ_RS08095 -3.5 -2.1 cobyric acid synthase CobQ compare
MMJJ_RS03060 -3.5 -1.9 methanogenesis marker 7 protein compare
MMJJ_RS01870 -3.5 -0.9 methanogenesis marker 15 protein compare
MMJJ_RS02275 -3.4 -3.4 nucleotidyltransferase domain-containing protein compare
MMJJ_RS05065 -3.4 -2.9 (4-{4-[2-(gamma-L- glutamylamino)ethyl]phenoxymethyl}furan-2-yl)methanamine synthase compare
MMJJ_RS00065 -3.4 -10.3 4Fe-4S dicluster domain-containing protein compare
MMJJ_RS05135 -3.4 -0.7 50S ribosomal protein L18Ae compare
MMJJ_RS00080 -3.4 -11.4 DUF166 domain-containing protein compare
MMJJ_RS00570 -3.3 -1.1 ribonuclease P compare
MMJJ_RS00935 -3.3 -11.7 nickel pincer cofactor biosynthesis protein LarB compare
MMJJ_RS08000 -3.3 -8.0 HesA/MoeB/ThiF family protein compare
MMJJ_RS01810 -3.3 -1.2 methyl coenzyme M reductase system, component A2 compare
MMJJ_RS03660 -3.3 -2.3 DUF447 family protein compare
MMJJ_RS04800 -3.3 -4.6 2-phospho-L-lactate guanylyltransferase compare
MMJJ_RS01600 -3.3 -1.5 radical SAM protein compare
MMJJ_RS05610 -3.3 -2.1 CDP-2,3-bis-(O-geranylgeranyl)-sn-glycerol synthase compare
MMJJ_RS00040 -3.3 -6.8 CO dehydrogenase/acetyl-CoA synthase complex subunit epsilon compare
MMJJ_RS02045 -3.3 -1.9 molybdenum cofactor guanylyltransferase compare
MMJJ_RS00645 -3.3 -9.0 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
MMJJ_RS02190 -3.3 -13.8 molybdopterin biosynthesis protein compare
MMJJ_RS04730 -3.2 -1.4 tyrosine decarboxylase MfnA compare
MMJJ_RS06000 -3.2 -2.6 cation:proton antiporter subunit C compare
MMJJ_RS05575 -3.2 -2.8 2-amino-5-formylamino-6-ribosylaminopyrimidin- 4(3H)-one 5'-monophosphate deformylase compare
MMJJ_RS07485 -3.2 -7.7 DedA family protein compare
MMJJ_RS07000 -3.2 -0.8 TrkH family potassium uptake protein compare
MMJJ_RS05115 -3.2 -4.3 P-II family nitrogen regulator compare
MMJJ_RS08250 -3.2 -5.7 hydrogenase maturation peptidase HycI compare
MMJJ_RS03125 -3.2 -2.4 GMC oxidoreductase compare
MMJJ_RS06695 -3.2 -1.7 amidohydrolase compare
MMJJ_RS06015 -3.2 -7.5 Na(+)/H(+) antiporter subunit B compare
MMJJ_RS00055 -3.2 -7.8 CO dehydrogenase/acetyl-CoA synthase subunit delta compare
MMJJ_RS08340 -3.1 -4.6 archaeoflavoprotein AfpA compare
MMJJ_RS03110 -3.1 -2.5 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))- methylthiotransferase compare
MMJJ_RS06855 -3.1 -0.6 DUF2104 domain-containing protein compare
MMJJ_RS06225 -3.1 -0.8 adenosylmethionine decarboxylase compare
MMJJ_RS06155 -3.1 -3.4 phosphatidylglycerophosphatase A compare
MMJJ_RS06925 -3.1 -1.0 GMP synthase subunit A compare
MMJJ_RS06625 -3.1 -1.0 pyruvate synthase subunit PorB compare
MMJJ_RS08330 -3.1 -1.8 SufD family Fe-S cluster assembly protein compare
MMJJ_RS06725 -3.1 -11.0 MogA/MoaB family molybdenum cofactor biosynthesis protein compare
MMJJ_RS01415 -3.1 -1.5 beta-CASP ribonuclease aCPSF1 compare
MMJJ_RS09375 -3.1 -0.9 hypothetical protein compare
MMJJ_RS08080 -3.1 -6.5 TIGR00300 family protein compare
MMJJ_RS04975 -3.1 -0.8 glycosyltransferase family 4 protein compare
MMJJ_RS00035 -3.1 -13.8 CO dehydrogenase/acetyl-CoA synthase complex subunit alpha compare
MMJJ_RS00560 -3.1 -2.4 homoisocitrate dehydrogenase compare
MMJJ_RS03005 -3.1 -2.0 Ni-sirohydrochlorin a,c-diamide reductive cyclase catalytic subunit compare
MMJJ_RS03150 -3.1 -4.8 2-phospho-L-lactate transferase compare
MMJJ_RS01935 -3.0 -2.9 O-phosphoseryl-tRNA(Sec) selenium transferase compare
MMJJ_RS05655 -3.0 -5.3 HisA/HisF family protein compare
MMJJ_RS04995 -3.0 -4.1 Tfx family DNA-binding protein compare
MMJJ_RS01765 -3.0 -7.8 winged helix-turn-helix domain-containing protein compare
MMJJ_RS06750 -3.0 -1.2 homoaconitase large subunit compare
MMJJ_RS04010 -3.0 -6.4 archaeal proteasome endopeptidase complex subunit alpha compare
MMJJ_RS07650 -3.0 -16.6 formate/nitrite transporter family protein compare
MMJJ_RS05190 -3.0 -6.1 gamma carbonic anhydrase family protein compare
MMJJ_RS07980 -3.0 -10.3 biotin synthase BioB compare
MMJJ_RS03670 -3.0 -3.4 precorrin-2 C(20)-methyltransferase compare
MMJJ_RS08925 -3.0 -12.1 winged helix-turn-helix transcriptional regulator compare
MMJJ_RS07660 -3.0 -6.1 carbonic anhydrase compare
MMJJ_RS05360 -3.0 -4.5 nickel-responsive transcriptional regulator NikR compare
MMJJ_RS03630 -3.0 -9.7 AMP phosphorylase compare
MMJJ_RS03840 -3.0 -2.5 DHH family phosphoesterase compare
MMJJ_RS00345 -3.0 -9.0 4-hydroxy-tetrahydrodipicolinate reductase compare
MMJJ_RS03920 -2.9 -10.9 nickel pincer cofactor biosynthesis protein LarC compare
MMJJ_RS09190 -2.9 -1.0 tryptophan synthase subunit beta compare
MMJJ_RS08915 -2.9 -7.0 CoB--CoM heterodisulfide reductase subunit C compare
MMJJ_RS09100 -2.9 -6.6 COG1361 S-layer family protein compare
MMJJ_RS05535 -2.9 -12.1 hypothetical protein compare
MMJJ_RS07635 -2.9 -9.1 response regulator transcription factor compare
MMJJ_RS07665 -2.9 -19.1 formate dehydrogenase subunit alpha compare
MMJJ_RS07410 -2.9 -2.4 methanogenesis marker protein Mmp4/MtxX compare
MMJJ_RS04145 -2.9 -6.3 glutamate-1-semialdehyde 2,1-aminomutase compare
MMJJ_RS02090 -2.9 -3.2 tyramine--L-glutamate ligase compare
MMJJ_RS01750 -2.8 -1.6 ferrous iron transport protein A compare
MMJJ_RS04475 -2.8 -2.7 3,4-dihydroxy-2-butanone-4-phosphate synthase compare
MMJJ_RS08500 -2.8 -4.9 L-sulfolactate dehydrogenase compare
MMJJ_RS02920 -2.8 -1.3 30S ribosomal protein S27ae compare
MMJJ_RS05810 -2.8 -5.3 precorrin-4 C(11)-methyltransferase compare
MMJJ_RS05110 -2.8 -17.4 ammonium transporter conserved
MMJJ_RS03580 -2.8 -2.2 TIGR00303 family protein compare
MMJJ_RS04655 -2.8 -5.1 FAD-dependent oxidoreductase compare
MMJJ_RS08005 -2.8 -11.5 formate dehydrogenase accessory sulfurtransferase FdhD compare
MMJJ_RS06730 -2.8 -4.5 ATP-binding cassette domain-containing protein compare
MMJJ_RS07655 -2.8 -14.5 hypothetical protein compare
MMJJ_RS00515 -2.8 -10.2 cobalt transporter CbiM compare
MMJJ_RS09175 -2.8 -0.6 anthranilate synthase component I compare
MMJJ_RS00385 -2.8 -10.7 TIGR00454 family protein compare
MMJJ_RS06510 -2.8 -1.4 LL-diaminopimelate aminotransferase compare
MMJJ_RS06185 -2.8 -3.3 cobalamin biosynthesis protein compare
MMJJ_RS03965 -2.8 -1.0 DNA-directed RNA polymerase subunit L compare
MMJJ_RS07640 -2.7 -17.6 cache domain-containing protein compare
MMJJ_RS03650 -2.7 -6.6 class I SAM-dependent methyltransferase family protein compare
MMJJ_RS07670 -2.7 -14.2 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C-terminal domain compare
MMJJ_RS04685 -2.7 -5.8 carbamoyltransferase HypF compare
MMJJ_RS06755 -2.7 -13.0 diadenylate cyclase compare
MMJJ_RS07160 -2.7 -15.6 M20 family metallo-hydrolase compare
MMJJ_RS03655 -2.7 -3.3 replication factor C large subunit compare
MMJJ_RS06915 -2.7 -13.9 helix-turn-helix domain-containing protein compare
MMJJ_RS08765 -2.7 -12.8 glycosyltransferase family 9 protein compare
MMJJ_RS06395 -2.7 -10.5 sugar phosphate isomerase/epimerase compare
MMJJ_RS08920 -2.7 -13.0 CoB--CoM heterodisulfide reductase subunit B compare
MMJJ_RS07995 -2.7 -5.7 molybdenum cofactor biosynthesis protein MoaE compare
MMJJ_RS00205 -2.7 -3.5 adenosylcobinamide-phosphate synthase CbiB compare
MMJJ_RS00355 -2.7 -1.6 ribonuclease P protein component 4 compare
MMJJ_RS08575 -2.7 -2.4 hypothetical protein compare
MMJJ_RS06025 -2.7 -14.2 4Fe-4S binding protein compare
MMJJ_RS08870 -2.6 -0.6 2-isopropylmalate synthase compare
MMJJ_RS06400 -2.6 -3.8 FumA C-terminus/TtdB family hydratase beta subunit compare
MMJJ_RS04155 -2.6 -5.0 hypothetical protein compare
MMJJ_RS06945 -2.6 -8.1 molybdopterin-guanine dinucleotide biosynthesis protein MobB compare
MMJJ_RS00370 -2.6 -0.9 asparagine synthase (glutamine-hydrolyzing) compare
MMJJ_RS08405 -2.6 -10.3 nickel-dependent hydrogenase large subunit compare
MMJJ_RS03820 -2.6 -2.7 hydrogenase formation protein HypD compare
MMJJ_RS03785 -2.6 -1.4 hypothetical protein compare
MMJJ_RS08660 -2.6 -1.8 acetylornithine transaminase compare
MMJJ_RS05950 -2.6 -1.6 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase compare
MMJJ_RS01500 -2.6 -6.4 transcriptional regulator compare
MMJJ_RS04870 -2.6 -0.9 tRNA-Asp compare
MMJJ_RS05540 -2.6 -13.3 LysR family transcriptional regulator compare
MMJJ_RS01755 -2.6 -1.1 ferrous iron transport protein B compare
MMJJ_RS00125 -2.6 -1.1 KEOPS complex subunit Cgi121 compare
MMJJ_RS07975 -2.6 -6.2 ATP-dependent sacrificial sulfur transferase LarE compare
MMJJ_RS06270 -2.6 -5.8 dethiobiotin synthase compare
MMJJ_RS03880 -2.5 -10.3 TraB/GumN family protein compare
MMJJ_RS00215 -2.5 -1.3 CCA tRNA nucleotidyltransferase compare
MMJJ_RS03200 -2.5 -1.1 uroporphyrinogen-III synthase compare
MMJJ_RS06005 -2.5 -6.9 energy conserving hydrogenase EhbF compare
MMJJ_RS06260 -2.5 -4.7 6-carboxyhexanoate--CoA ligase compare
MMJJ_RS05650 -2.5 -1.7 formylmethanofuran dehydrogenase subunit B compare
MMJJ_RS04650 -2.5 -4.2 nitrogenase iron protein compare
MMJJ_RS06635 -2.5 -12.8 4Fe-4S binding protein compare
MMJJ_RS06265 -2.4 -8.5 8-amino-7-oxononanoate synthase compare
MMJJ_RS04150 -2.4 -1.3 DUF5379 domain-containing protein compare
MMJJ_RS03760 -2.4 -2.3 hydrogenase maturation nickel metallochaperone HypA compare
MMJJ_RS06715 -2.4 -9.1 lactaldehyde dehydrogenase compare
MMJJ_RS08625 -2.4 -5.5 magnesium/cobalt transporter CorA compare
MMJJ_RS05070 -2.4 -1.2 DNA primase catalytic subunit PriS compare
MMJJ_RS07785 -2.4 -1.5 fumarate reductase subunit A compare
MMJJ_RS06030 -2.4 -2.9 4Fe-4S binding protein compare
MMJJ_RS06910 -2.4 -1.5 energy-converting NiFe hydrogenase A subunit EhaA compare
MMJJ_RS01355 -2.4 -1.7 UDP-N-acetyl-D-mannosamine dehydrogenase compare
MMJJ_RS00210 -2.4 -1.3 DUF530 family protein compare
MMJJ_RS01565 -2.4 -5.8 TIGR00267 family protein compare
MMJJ_RS04050 -2.4 -1.0 dihydroneopterin aldolase family protein compare
MMJJ_RS08710 -2.4 -7.4 UTP--glucose-1-phosphate uridylyltransferase GalU compare
MMJJ_RS06250 -2.3 -1.0 nicotinamide-nucleotide adenylyltransferase compare


Specific Phenotypes

For 22 genes in this experiment

For nitrogen source Adenosine in Methanococcus maripaludis JJ

For nitrogen source Adenosine across organisms