Experiment set4IT009 for Pseudomonas fluorescens SBW25-INTG

Compare to:

N-Acetyl-D-Glucosamine nitrogen source; with MOPS

200 most important genes:

  gene name fitness t score description  
PFLU_RS03645 -6.1 -4.2 tetratricopeptide repeat protein compare
PFLU_RS01645 -5.9 -4.1 S41 family peptidase compare
PFLU_RS23920 -5.7 -3.9 septation protein A compare
PFLU_RS28645 -5.2 -16.3 phosphoenolpyruvate--protein phosphotransferase compare
PFLU_RS28695 -4.9 -4.8 phosphoglycerate dehydrogenase compare
PFLU_RS14550 -4.5 -7.5 UTP--glucose-1-phosphate uridylyltransferase GalU compare
PFLU_RS02490 -4.3 -11.5 phosphoserine phosphatase SerB compare
PFLU_RS28535 -4.2 -14.5 dihydroxy-acid dehydratase compare
PFLU_RS28390 -4.1 -11.5 methionine biosynthesis protein MetW compare
PFLU_RS01690 -4.1 -8.3 nitrogen regulation protein NR(II) compare
PFLU_RS26545 -4.0 -13.5 sel1 repeat family protein compare
PFLU_RS25760 -4.0 -12.7 glucose-6-phosphate isomerase compare
PFLU_RS12980 -3.9 -7.5 nitrite/sulfite reductase compare
PFLU_RS24125 -3.9 -5.3 cold-shock protein compare
PFLU_RS20575 -3.8 -7.2 3-isopropylmalate dehydratase small subunit compare
PFLU_RS20565 -3.8 -14.2 3-isopropylmalate dehydrogenase compare
PFLU_RS24765 -3.7 -21.0 2-isopropylmalate synthase compare
PFLU_RS29875 -3.7 -16.6 oxaloacetate decarboxylase subunit alpha compare
PFLU_RS20580 -3.6 -14.0 3-isopropylmalate dehydratase large subunit compare
PFLU_RS29885 -3.6 -12.3 LysR family transcriptional regulator compare
PFLU_RS22095 -3.6 -20.5 GTP diphosphokinase compare
PFLU_RS18505 -3.6 -9.9 uroporphyrinogen-III C-methyltransferase compare
PFLU_RS22740 -3.5 -4.8 phosphoadenylyl-sulfate reductase compare
PFLU_RS29095 -3.5 -24.0 polyphosphate kinase 1 compare
PFLU_RS29880 -3.4 -14.8 acetyl-CoA carboxylase biotin carboxylase subunit compare
PFLU_RS25640 -3.4 -12.8 ketol-acid reductoisomerase compare
PFLU_RS27370 -3.4 -13.1 anthranilate phosphoribosyltransferase compare
PFLU_RS23725 -3.4 -12.8 glucose-6-phosphate dehydrogenase compare
PFLU_RS28965 -3.4 -10.8 5-formyltetrahydrofolate cyclo-ligase compare
PFLU_RS22595 -3.4 -3.3 OmpA family protein compare
PFLU_RS02045 -3.4 -22.7 glutamate synthase large subunit compare
PFLU_RS28655 -3.4 -14.3 HAD family hydrolase compare
PFLU_RS20510 -3.3 -13.5 O-succinylhomoserine sulfhydrylase compare
PFLU_RS25360 -3.3 -8.2 glutamate 5-kinase compare
PFLU_RS02365 -3.3 -15.2 glycosyltransferase compare
PFLU_RS04070 -3.3 -5.4 peptide chain release factor 3 compare
PFLU_RS02050 -3.3 -17.6 NAD(P)-binding protein compare
PFLU_RS01900 -3.3 -8.4 phosphoribosyl-AMP cyclohydrolase compare
PFLU_RS28385 -3.3 -14.3 homoserine O-acetyltransferase compare
PFLU_RS23070 -3.2 -1.9 50S ribosomal protein L32 compare
PFLU_RS01605 -3.2 -10.5 imidazoleglycerol-phosphate dehydratase HisB compare
PFLU_RS29515 -3.2 -12.4 RidA family protein compare
PFLU_RS24330 -3.1 -6.8 phosphogluconate dehydratase compare
PFLU_RS09055 -3.1 -2.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
PFLU_RS12975 -3.1 -6.4 DUF934 domain-containing protein compare
PFLU_RS28165 -3.1 -12.6 methylenetetrahydrofolate reductase [NAD(P)H] compare
PFLU_RS20540 -3.1 -12.1 phosphoribosylanthranilate isomerase compare
PFLU_RS13485 -3.1 -16.4 1,4-alpha-glucan branching protein GlgB compare
PFLU_RS04470 -3.1 -12.5 histidinol dehydrogenase compare
PFLU_RS23305 -3.0 -11.5 arginine N-succinyltransferase compare
PFLU_RS27365 -3.0 -10.4 indole-3-glycerol phosphate synthase TrpC compare
PFLU_RS24485 -3.0 -12.7 hypothetical protein compare
PFLU_RS23065 -3.0 -11.2 phosphate acyltransferase PlsX compare
PFLU_RS01685 -3.0 -5.6 nitrogen regulation protein NR(I) compare
PFLU_RS00175 -2.9 -8.2 tryptophan synthase subunit alpha compare
PFLU_RS19555 -2.9 -2.8 histidine phosphatase family protein compare
PFLU_RS01610 -2.9 -12.6 imidazole glycerol phosphate synthase subunit HisH compare
PFLU_RS00180 -2.9 -8.8 tryptophan synthase subunit beta compare
PFLU_RS06265 -2.8 -17.9 [protein-PII] uridylyltransferase compare
PFLU_RS01620 -2.8 -10.2 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
PFLU_RS10325 -2.8 -10.6 MFS transporter compare
PFLU_RS03970 -2.8 -10.1 carboxylating nicotinate-nucleotide diphosphorylase compare
PFLU_RS01625 -2.7 -3.2 imidazole glycerol phosphate synthase subunit HisF compare
PFLU_RS01895 -2.7 -7.3 phosphoribosyl-ATP diphosphatase compare
PFLU_RS04465 -2.7 -9.9 ATP phosphoribosyltransferase compare
PFLU_RS13540 -2.7 -2.6 3-phosphoshikimate 1-carboxyvinyltransferase compare
PFLU_RS25735 -2.6 -8.3 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS04660 -2.6 -6.8 division/cell wall cluster transcriptional repressor MraZ compare
PFLU_RS22105 -2.6 -6.4 cysteine synthase CysM compare
PFLU_RS20515 -2.6 -3.0 amidophosphoribosyltransferase compare
PFLU_RS24095 -2.6 -3.0 crossover junction endodeoxyribonuclease RuvC compare
PFLU_RS04715 -2.6 -6.6 D-alanine--D-alanine ligase compare
PFLU_RS03535 -2.5 -3.8 YscO family type III secretion system apparatus protein compare
PFLU_RS25755 -2.5 -4.4 pantoate--beta-alanine ligase compare
PFLU_RS24025 -2.4 -11.3 quinolinate synthase NadA compare
PFLU_RS03765 -2.4 -10.9 sulfate adenylyltransferase subunit CysD compare
PFLU_RS28650 -2.4 -8.3 RNA pyrophosphohydrolase compare
PFLU_RS09305 -2.3 -15.5 hypothetical protein compare
PFLU_RS23310 -2.3 -9.7 arginine/ornithine succinyltransferase subunit alpha compare
PFLU_RS24670 -2.3 -3.1 HigA family addiction module antidote protein compare
PFLU_RS04430 -2.3 -8.6 ATP-binding cassette domain-containing protein compare
PFLU_RS06320 -2.3 -4.2 OmpH family outer membrane protein compare
PFLU_RS18530 -2.3 -5.2 DNA translocase FtsK compare
PFLU_RS04315 -2.3 -4.2 rod shape-determining protein MreD compare
PFLU_RS27640 -2.3 -2.0 alpha/beta fold hydrolase compare
PFLU_RS02590 -2.2 -8.8 ATP phosphoribosyltransferase regulatory subunit compare
PFLU_RS03770 -2.2 -11.5 sulfate adenylyltransferase subunit CysN compare
PFLU_RS19170 -2.2 -3.0 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
PFLU_RS21495 -2.2 -3.3 TlpA family protein disulfide reductase compare
PFLU_RS22575 -2.2 -7.5 ANTAR domain-containing protein conserved
PFLU_RS19165 -2.2 -5.0 ATP-dependent Clp protease ATP-binding subunit ClpX compare
PFLU_RS04075 -2.1 -1.7 hypothetical protein compare
PFLU_RS27650 -2.1 -12.2 biotin synthase BioB compare
PFLU_RS07495 -2.1 -3.5 DUF2892 domain-containing protein compare
PFLU_RS29310 -2.1 -1.8 accessory factor UbiK family protein compare
PFLU_RS04565 -2.1 -1.7 TMEM165/GDT1 family protein compare
PFLU_RS01960 -2.1 -1.4 ATP-dependent protease ATPase subunit HslU compare
PFLU_RS30165 -2.0 -8.8 ParA family protein compare
PFLU_RS24085 -2.0 -3.9 Holliday junction branch migration DNA helicase RuvB compare
PFLU_RS16715 -2.0 -10.0 nitrite reductase large subunit conserved
PFLU_RS28690 -2.0 -11.1 FAD-binding oxidoreductase compare
PFLU_RS30160 -1.9 -2.9 ParB/RepB/Spo0J family partition protein compare
PFLU_RS15410 -1.9 -2.5 zinc-dependent alcohol dehydrogenase family protein compare
PFLU_RS09980 -1.9 -12.4 peptidase S41 compare
PFLU_RS16710 -1.9 -4.1 nitrite reductase small subunit NirD compare
PFLU_RS18670 -1.9 -2.1 NADH-quinone oxidoreductase subunit M compare
PFLU_RS26640 -1.9 -10.8 septal ring lytic transglycosylase RlpA family protein compare
PFLU_RS07785 -1.9 -10.5 VacJ family lipoprotein compare
PFLU_RS26595 -1.9 -1.8 lipoprotein compare
PFLU_RS03610 -1.9 -6.4 redox-regulated ATPase YchF compare
PFLU_RS04435 -1.8 -6.7 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
PFLU_RS13795 -1.8 -2.8 hypothetical protein compare
PFLU_RS26565 -1.8 -2.3 rRNA maturation RNase YbeY compare
PFLU_RS07225 -1.8 -11.4 L-aspartate oxidase compare
PFLU_RS06555 -1.8 -8.4 OmpA family protein compare
PFLU_RS26770 -1.8 -9.8 DedA family protein compare
PFLU_RS04440 -1.7 -8.8 outer membrane lipid asymmetry maintenance protein MlaD compare
PFLU_RS29400 -1.7 -2.6 DUF1127 domain-containing protein compare
PFLU_RS02860 -1.7 -2.7 urease subunit beta compare
PFLU_RS04150 -1.7 -5.1 DUF1043 family protein compare
PFLU_RS27635 -1.7 -7.5 malonyl-ACP O-methyltransferase BioC compare
PFLU_RS08155 -1.7 -4.1 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
PFLU_RS25595 -1.7 -1.2 exodeoxyribonuclease V subunit gamma compare
PFLU_RS22070 -1.7 -4.1 phosphoribosylglycinamide formyltransferase compare
PFLU_RS08160 -1.7 -7.3 sugar transferase compare
PFLU_RS22030 -1.6 -3.0 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
PFLU_RS28195 -1.6 -9.6 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
PFLU_RS00310 -1.6 -1.6 twin transmembrane helix small protein compare
PFLU_RS08505 -1.6 -6.6 protease HtpX compare
PFLU_RS19665 -1.6 -2.1 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit compare
PFLU_RS07650 -1.6 -10.6 fatty acid oxidation complex subunit alpha FadB compare
PFLU_RS25225 -1.6 -8.0 disulfide bond formation protein B compare
PFLU_RS07670 -1.6 -5.5 hypothetical protein compare
PFLU_RS17615 -1.6 -2.2 DeoR/GlpR transcriptional regulator compare
PFLU_RS09480 -1.6 -2.9 hypothetical protein compare
PFLU_RS04445 -1.6 -6.1 ABC transporter substrate-binding protein compare
PFLU_RS21300 -1.6 -5.0 cysteine hydrolase compare
PFLU_RS24335 -1.6 -9.4 type I glyceraldehyde-3-phosphate dehydrogenase compare
PFLU_RS24090 -1.6 -3.2 Holliday junction branch migration protein RuvA compare
PFLU_RS25715 -1.6 -8.4 RNA polymerase-binding protein DksA compare
PFLU_RS26735 -1.5 -7.3 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PFLU_RS23590 -1.5 -1.7 gluconokinase compare
PFLU_RS18655 -1.5 -2.3 NADH-quinone oxidoreductase subunit J compare
PFLU_RS27645 -1.5 -8.0 8-amino-7-oxononanoate synthase compare
PFLU_RS19175 -1.5 -7.1 trigger factor compare
PFLU_RS31530 -1.5 -1.0 transposase compare
PFLU_RS14005 -1.5 -2.0 hypothetical protein compare
PFLU_RS31755 -1.5 -1.5 hypothetical protein compare
PFLU_RS07255 -1.5 -3.6 sulfurtransferase TusA family protein compare
PFLU_RS04935 -1.5 -3.7 cyclic pyranopterin monophosphate synthase MoaC compare
PFLU_RS27630 -1.4 -3.7 dethiobiotin synthase compare
PFLU_RS04945 -1.4 -3.2 molybdopterin synthase catalytic subunit MoaE compare
PFLU_RS27380 -1.4 -7.7 anthranilate synthase component I compare
PFLU_RS08410 -1.4 -5.6 HTH-type transcriptional regulator CysB compare
PFLU_RS02040 -1.4 -3.5 hypothetical protein compare
PFLU_RS27440 -1.4 -4.6 nucleotidyltransferase family protein compare
PFLU_RS26660 -1.4 -2.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH compare
PFLU_RS31690 -1.4 -2.4 hypothetical protein compare
PFLU_RS01965 -1.4 -1.8 ATP-dependent protease subunit HslV compare
PFLU_RS29550 -1.4 -6.2 ATP-dependent DNA helicase RecG compare
PFLU_RS18805 -1.4 -1.5 ABC transporter ATP-binding protein compare
PFLU_RS30345 -1.4 -2.2 DUF2559 family protein compare
PFLU_RS00415 -1.3 -2.0 thiol:disulfide interchange protein DsbA/DsbL compare
PFLU_RS13300 -1.3 -3.1 DNA-directed RNA polymerase sigma-70 factor compare
PFLU_RS04650 -1.3 -9.8 ABC transporter substrate-binding protein compare
PFLU_RS22580 -1.3 -7.8 NarK/NasA family nitrate transporter conserved
PFLU_RS05965 -1.3 -1.4 hypothetical protein compare
PFLU_RS27620 -1.3 -9.9 acyl-CoA dehydrogenase compare
PFLU_RS13015 -1.3 -4.4 precorrin-4 C(11)-methyltransferase compare
PFLU_RS18675 -1.3 -2.3 NADH-quinone oxidoreductase subunit NuoN compare
PFLU_RS14210 -1.3 -2.4 TetR/AcrR family transcriptional regulator compare
PFLU_RS28285 -1.3 -2.4 hypothetical protein compare
PFLU_RS28725 -1.3 -8.1 DUF2059 domain-containing protein compare
PFLU_RS01485 -1.3 -8.4 cellulase compare
PFLU_RS25585 -1.3 -1.8 exodeoxyribonuclease V subunit alpha compare
PFLU_RS16580 -1.3 -2.4 hypothetical protein compare
PFLU_RS31310 -1.2 -2.2 phage tail protein compare
PFLU_RS02875 -1.2 -3.3 urease subunit gamma compare
PFLU_RS10405 -1.2 -2.1 helix-turn-helix transcriptional regulator compare
PFLU_RS02690 -1.2 -1.5 hypothetical protein compare
PFLU_RS00530 -1.2 -1.8 DUF2388 domain-containing protein compare
PFLU_RS01640 -1.2 -3.9 divergent polysaccharide deacetylase family protein compare
PFLU_RS04325 -1.2 -8.6 ribonuclease G compare
PFLU_RS07725 -1.2 -3.3 Si-specific NAD(P)(+) transhydrogenase compare
PFLU_RS02460 -1.2 -7.2 alpha/beta fold hydrolase compare
PFLU_RS27475 -1.2 -5.4 symmetrical bis(5'-nucleosyl)-tetraphosphatase compare
PFLU_RS01615 -1.2 -2.6 DUF2164 domain-containing protein compare
PFLU_RS04220 -1.2 -5.8 FadR family transcriptional regulator compare
PFLU_RS29275 -1.2 -4.2 DUF484 family protein compare
PFLU_RS20285 -1.2 -5.2 MerR family transcriptional regulator compare
PFLU_RS29900 -1.2 -7.4 DNA helicase II compare
PFLU_RS05585 -1.2 -3.9 MtnX-like HAD-IB family phosphatase compare
PFLU_RS05250 -1.2 -3.5 elongation factor 4 compare
PFLU_RS02370 -1.2 -5.7 glycosyltransferase compare
PFLU_RS08675 -1.2 -1.1 DsbE family thiol:disulfide interchange protein compare
PFLU_RS18615 -1.2 -2.1 NADH-quinone oxidoreductase subunit A compare
PFLU_RS24145 -1.2 -4.7 mechanosensitive ion channel compare
PFLU_RS09540 -1.2 -1.6 TIGR03745 family integrating conjugative element membrane protein compare
PFLU_RS02205 -1.2 -6.1 potassium/proton antiporter compare
PFLU_RS25750 -1.2 -3.9 3-methyl-2-oxobutanoate hydroxymethyltransferase compare


Specific Phenotypes

For 4 genes in this experiment

For nitrogen source D-Glucose in Pseudomonas fluorescens SBW25-INTG

For nitrogen source D-Glucose across organisms