Experiment set4IT009 for Methanococcus maripaludis S2

Compare to:

H2 deepwell casamino acid FREE

200 most important genes:

  gene name fitness t score description  
MMP_RS07845 -3.1 -3.6 LL-diaminopimelate aminotransferase compare
MMP_RS06355 -2.9 -3.5 molybdenum cofactor biosynthesis protein MoaE compare
MMP_RS05500 -2.8 -12.3 2-isopropylmalate synthase compare
MMP_RS07730 -2.8 -2.8 pyruvate synthase subunit beta compare
MMP_RS00695 -2.7 -1.3 biotin--[acetyl-CoA-carboxylase] ligase compare
MMP_RS07630 -2.6 -2.1 ATP-binding cassette domain-containing protein compare
MMP_RS03475 -2.6 -0.9 hypothetical protein compare
MMP_RS03035 -2.6 -5.3 4-hydroxy-tetrahydrodipicolinate synthase compare
MMP_RS01020 -2.6 -1.4 3 4-dihydroxy-2-butanone-4-phosphate synthase compare
MMP_RS05555 -2.5 -1.8 DUF4040 domain-containing protein compare
MMP_RS07345 -2.5 -8.1 glycine synthesis protein GlyXL (from data) compare
MMP_RS02900 -2.5 -1.0 imidazoleglycerol-phosphate dehydratase HisB compare
MMP_RS01545 -2.4 -1.6 CBS domain-containing protein compare
MMP_RS03315 -2.4 -1.6 ferrous iron transport protein A compare
MMP_RS02195 -2.3 -4.0 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-methylthiotransferase compare
MMP_RS04605 -2.3 -7.0 cobalt ECF transporter T component CbiQ compare
MMP_RS03450 -2.2 -3.2 glycine synthesis protein GlyXS (from data) compare
MMP_RS04615 -2.2 -5.7 PDGLE domain-containing protein compare
MMP_RS01455 -2.1 -9.1 nickel pincer cofactor biosynthesis protein LarC compare
MMP_RS01005 -2.1 -2.0 riboflavin synthase compare
MMP_RS00300 -2.1 -0.9 6 7-dimethyl-8-ribityllumazine synthase compare
MMP_RS03435 -2.0 -2.3 ketol-acid reductoisomerase compare
MMP_RS01175 -2.0 -4.3 triphosphoribosyl-dephospho-CoA synthase compare
MMP_RS04780 -2.0 -3.8 ribonuclease P compare
MMP_RS06625 -2.0 -2.5 DNA primase compare
MMP_RS05930 -1.9 -2.9 3-isopropylmalate dehydratase large subunit compare
MMP_RS07955 -1.9 -6.6 FumA C-terminus/TtdB family hydratase beta subunit compare
MMP_RS03015 -1.9 -10.2 GTP 3' 8-cyclase MoaA compare
MMP_RS04620 -1.9 -11.4 cobalt transporter CbiM compare
MMP_RS05265 -1.9 -2.6 2-isopropylmalate synthase compare
MMP_RS05550 -1.9 -0.8 cation:proton antiporter compare
MMP_RS07635 -1.9 -6.9 MogA/MoaB family molybdenum cofactor biosynthesis protein compare
MMP_RS05515 -1.9 -7.1 cyclic pyranopterin monophosphate synthase MoaC compare
MMP_RS05425 -1.9 -5.8 monovalent cation/H+ antiporter complex subunit F compare
MMP_RS05920 -1.8 -0.8 50S ribosomal protein L37e compare
MMP_RS06270 -1.8 -7.8 TIGR00300 family protein compare
MMP_RS00305 -1.8 -2.1 phosphoribosyl-ATP diphosphatase compare
MMP_RS08350 -1.8 -1.3 hypothetical protein compare
MMP_RS03445 -1.8 -1.2 methanogenesis marker 17 protein compare
MMP_RS06630 -1.8 -1.1 UPF0058 family protein compare
MMP_RS06350 -1.8 -8.6 HesA/MoeB/ThiF family protein compare
MMP_RS06375 -1.8 -5.9 ATP-dependent sacrificial sulfur transferase LarE compare
MMP_RS01700 -1.8 -1.3 dihydroxy-acid dehydratase compare
MMP_RS04500 -1.8 -12.5 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
MMP_RS09020 -1.8 -1.9 hypothetical protein compare
MMP_RS01795 -1.8 -2.1 methanogenesis marker 6 protein compare
MMP_RS07005 -1.8 -0.8 4Fe-4S binding protein compare
MMP_RS06895 -1.7 -2.2 selenocysteine-specific translation elongation factor compare
MMP_RS05845 -1.7 -2.2 tRNA-intron lyase compare
MMP_RS03250 -1.7 -4.5 MJ1244 family protein compare
MMP_RS06400 -1.7 -1.9 4Fe-4S binding protein compare
MMP_RS07545 -1.7 -1.3 HTH domain-containing protein compare
MMP_RS04215 -1.7 -8.0 nickel pincer cofactor biosynthesis protein LarB compare
MMP_RS02235 -1.6 -8.8 CBS domain-containing protein compare
MMP_RS02240 -1.6 -3.4 methanogenesis marker 7 protein compare
MMP_RS02135 -1.6 -4.1 DUF5612 domain-containing protein compare
MMP_RS08330 -1.6 -7.1 NADH-quinone oxidoreductase subunit H compare
MMP_RS06120 -1.6 -2.1 UPF0147 family protein compare
MMP_RS02355 -1.6 -3.4 30S ribosomal protein S27ae compare
MMP_RS04685 -1.5 -3.4 DUF126 domain-containing protein compare
MMP_RS03600 -1.5 -2.0 triose-phosphate isomerase compare
MMP_RS06295 -1.5 -7.7 methanogenesis marker 14 protein compare
MMP_RS00750 -1.5 -2.1 fumarate hydratase compare
MMP_RS07185 -1.5 -10.5 pyridoxal phosphate-dependent aminotransferase compare
MMP_RS07355 -1.5 -1.2 transcription factor S compare
MMP_RS08105 -1.5 -6.2 6-carboxyhexanoate--CoA ligase compare
MMP_RS01225 -1.5 -4.7 DUF5379 domain-containing protein compare
MMP_RS03390 -1.5 -7.9 malate dehydrogenase compare
MMP_RS08095 -1.5 -6.5 dethiobiotin synthase compare
MMP_RS06105 -1.5 -7.5 hydrogenase maturation peptidase HycI compare
MMP_RS01240 -1.5 -1.9 7-cyano-7-deazaguanine synthase QueC compare
MMP_RS07735 -1.4 -1.0 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha compare
MMP_RS06885 -1.4 -2.6 50S ribosome-binding GTPase compare
MMP_RS08745 -1.4 -5.5 CDP-2 3-bis-(O-geranylgeranyl)-sn-glycerol synthase compare
MMP_RS01265 -1.4 -3.0 hypothetical protein compare
MMP_RS04790 -1.4 -10.2 4-hydroxy-tetrahydrodipicolinate reductase compare
MMP_RS03640 -1.4 -3.8 archaeal proteasome endopeptidase complex subunit beta compare
MMP_RS02010 -1.4 -6.2 PHP domain-containing protein compare
MMP_RS05540 -1.4 -4.6 hypothetical protein compare
MMP_RS06730 -1.4 -1.8 phosphopantothenate/pantothenate synthetase compare
MMP_RS01610 -1.4 -3.1 hypothetical protein compare
MMP_RS06370 -1.3 -4.4 biotin synthase BioB compare
MMP_RS07645 -1.3 -6.9 aldehyde dehydrogenase family protein compare
MMP_RS03700 -1.3 -6.3 sodium:proton antiporter compare
MMP_RS07575 -1.3 -3.6 RNA ligase partner protein compare
MMP_RS03025 -1.3 -3.6 molybdenum cofactor guanylyltransferase compare
MMP_RS00810 -1.3 -6.4 topoisomerase DNA-binding C4 zinc finger domain-containing protein compare
MMP_RS08100 -1.3 -5.5 8-amino-7-oxononanoate synthase compare
MMP_RS08720 -1.3 -1.6 4Fe-4S binding protein compare
MMP_RS04890 -1.3 -0.9 adenylyltransferase/cytidyltransferase family protein compare
MMP_RS02885 -1.3 -9.7 molybdopterin biosynthesis protein compare
MMP_RS02800 -1.3 -4.5 nucleotidyltransferase domain-containing protein compare
MMP_RS01380 -1.2 -3.2 PHP domain-containing protein compare
MMP_RS07580 -1.2 -2.3 DUF356 domain-containing protein compare
MMP_RS00685 -1.2 -2.9 2-phospho-L-lactate guanylyltransferase compare
MMP_RS06700 -1.2 -7.6 hypothetical protein compare
MMP_RS04775 -1.2 -2.9 adenosylhomocysteinase compare
MMP_RS00735 -1.2 -3.8 5 10-methenyltetrahydromethanopterin hydrogenase compare
MMP_RS08725 -1.2 -2.0 Ni/Fe hydrogenase subunit alpha compare
MMP_RS02280 -1.2 -0.9 DUF211 domain-containing protein compare
MMP_RS02875 -1.2 -6.2 chorismate pyruvate-lyase family protein compare
MMP_RS07350 -1.2 -1.9 preprotein translocase subunit Sec61beta compare
MMP_RS00130 -1.2 -1.3 nickel-responsive transcriptional regulator NikR compare
MMP_RS01755 -1.2 -1.1 DUF2097 domain-containing protein compare
MMP_RS01830 -1.2 -1.5 tRNA-Val compare
MMP_RS06020 -1.2 -3.9 archaeoflavoprotein AfpA compare
MMP_RS05950 -1.1 -7.5 nickel-dependent hydrogenase large subunit compare
MMP_RS07420 -1.1 -3.3 metalloregulator ArsR/SmtB family transcription factor compare
MMP_RS01220 -1.1 -5.0 hypothetical protein compare
MMP_RS08165 -1.1 -2.2 phosphoglycerate dehydrogenase compare
MMP_RS06705 -1.1 -4.3 formate/nitrite transporter family protein compare
MMP_RS07600 -1.1 -2.6 Ni-sirohydrochlorin a c-diamide synthase compare
MMP_RS08790 -1.1 -1.7 translation initiation factor IF-2 subunit alpha compare
MMP_RS07555 -1.1 -0.7 monovalent cation/H+ antiporter subunit E compare
MMP_RS04585 -1.1 -6.4 AIR synthase related protein compare
MMP_RS00985 -1.1 -4.4 CDC48 family AAA ATPase compare
MMP_RS03145 -1.1 -5.3 fibrillarin-like rRNA/tRNA 2'-O-methyltransferase compare
MMP_RS01800 -1.1 -2.8 TIGR00303 family protein compare
MMP_RS08635 -1.1 -1.2 UbiA family prenyltransferase compare
MMP_RS03400 -1.1 -2.2 archease compare
MMP_RS06340 -1.1 -6.1 phosphoadenosine phosphosulfate reductase family protein compare
MMP_RS08760 -1.1 -2.4 hypothetical protein compare
MMP_RS07750 -1.0 -3.7 DUF357 domain-containing protein compare
MMP_RS07195 -1.0 -5.9 M20 family metallo-hydrolase compare
MMP_RS01325 -1.0 -1.9 dihydroneopterin aldolase family protein compare
MMP_RS08320 -1.0 -3.9 molybdopterin molybdotransferase MoeA compare
MMP_RS00895 -1.0 -3.2 hypothetical protein compare
MMP_RS03420 -1.0 -3.2 acetolactate synthase small subunit compare
MMP_RS01925 -1.0 -5.7 DUF1616 domain-containing protein compare
MMP_RS06925 -1.0 -1.7 ribonuclease VapC4 compare
MMP_RS03140 -1.0 -6.1 hypothetical protein compare
MMP_RS08345 -1.0 -6.9 4Fe-4S binding protein compare
MMP_RS07710 -1.0 -5.9 cell division protein FtsZ compare
MMP_RS06680 -1.0 -6.3 Coenzyme F420 hydrogenase/dehydrogenase beta subunit C-terminal domain compare
MMP_RS07380 -1.0 -1.7 transcription elongation factor Spt5 compare
MMP_RS08650 -1.0 -2.6 glutamine--fructose-6-phosphate transaminase (isomerizing) compare
MMP_RS08355 -1.0 -4.2 Na(+)/H(+) antiporter subunit B compare
MMP_RS07425 -1.0 -3.4 GTP-binding protein compare
MMP_RS06285 -0.9 -1.6 precorrin-6Y C5 15-methyltransferase (decarboxylating) subunit CbiT compare
MMP_RS05460 -0.9 -6.2 YcaO-related McrA-glycine thioamidation protein compare
MMP_RS07075 -0.9 -3.1 phosphomannomutase/phosphoglucomutase compare
MMP_RS01385 -0.9 -0.5 imidazole glycerol phosphate synthase subunit HisH compare
MMP_RS06230 -0.9 -1.9 helix-turn-helix domain-containing protein compare
MMP_RS00295 -0.9 -1.6 gamma carbonic anhydrase family protein compare
MMP_RS06685 -0.9 -6.0 formate dehydrogenase H subunit alpha selenocysteine-containing compare
MMP_RS03205 -0.9 -0.9 peptidyl-tRNA hydrolase Pth2 compare
MMP_RS08335 -0.9 -3.3 NADH-quinone oxidoreductase subunit B family protein compare
MMP_RS06865 -0.9 -1.6 HypC/HybG/HupF family hydrogenase formation chaperone compare
MMP_RS02345 -0.9 -1.8 GTP-dependent dephospho-CoA kinase family protein compare
MMP_RS06345 -0.9 -5.0 formate dehydrogenase accessory sulfurtransferase FdhD compare
MMP_RS05875 -0.9 -2.8 hydroxyethylthiazole kinase compare
MMP_RS08820 -0.9 -2.5 hypothetical protein compare
MMP_RS08210 -0.9 -1.6 phosphatidylglycerophosphatase A compare
MMP_RS01720 -0.9 -1.3 replication factor C large subunit compare
MMP_RS06485 -0.8 -0.8 zinc ribbon domain-containing protein compare
MMP_RS04850 -0.8 -6.6 UPF0254 family protein compare
MMP_RS05430 -0.8 -3.5 TIGR00288 family NYN domain-containing protein compare
MMP_RS02495 -0.8 -2.1 hypothetical protein compare
MMP_RS08365 -0.8 -2.9 energy conserving hydrogenase EhbF compare
MMP_RS02245 -0.8 -2.4 hypothetical protein compare
MMP_RS01500 -0.8 -1.1 CBS domain-containing protein compare
MMP_RS03395 -0.8 -3.4 hypothetical protein compare
MMP_RS01665 -0.8 -1.7 DUF2111 domain-containing protein compare
MMP_RS00730 -0.8 -4.2 5 10-methenyltetrahydromethanopterin hydrogenase cofactor biosynthesis protein HmdB compare
MMP_RS05250 -0.8 -1.0 NFYB/HAP3 family transcription factor subunit compare
MMP_RS08715 -0.8 -0.9 formylmethanofuran dehydrogenase subunit B compare
MMP_RS01900 -0.8 -5.6 hypothetical protein compare
MMP_RS03585 -0.8 -2.5 Hsp20/alpha crystallin family protein compare
MMP_RS01250 -0.8 -3.0 tRNA (guanine(26)-N(2))-dimethyltransferase compare
MMP_RS06315 -0.8 -0.8 cobalt-precorrin-7 (C(5))-methyltransferase compare
MMP_RS06130 -0.8 -2.6 peptidylprolyl isomerase compare
MMP_RS08370 -0.8 -0.5 cation:proton antiporter subunit C compare
MMP_RS05925 -0.8 -2.4 small nuclear ribonucleoprotein compare
MMP_RS04785 -0.8 -5.5 hypothetical protein compare
MMP_RS00320 -0.8 -1.4 class I SAM-dependent methyltransferase compare
MMP_RS07755 -0.8 -0.9 DUF555 domain-containing protein compare
MMP_RS00110 -0.8 -1.4 hypothetical protein compare
MMP_RS06725 -0.8 -4.8 hypothetical protein compare
MMP_RS08360 -0.8 -2.6 hypothetical protein compare
MMP_RS02130 -0.8 -3.4 zinc metalloprotease HtpX compare
MMP_RS08340 -0.8 -2.2 4Fe-4S binding protein compare
MMP_RS00120 -0.8 -2.4 LysR family transcriptional regulator compare
MMP_RS08000 -0.8 -5.5 methyl coenzyme M reductase-arginine methyltransferase Mmp10 compare
MMP_RS01840 -0.8 -4.9 TIGR00289 family protein compare
MMP_RS06940 -0.8 -2.3 polyprenyl diphosphate synthase compare
MMP_RS07725 -0.7 -2.1 4Fe-4S dicluster domain-containing protein compare
MMP_RS02145 -0.7 -2.8 winged helix-turn-helix transcriptional regulator compare
MMP_RS06475 -0.7 -2.5 FAD-dependent oxidoreductase compare
MMP_RS03095 -0.7 -2.9 diphthine synthase compare
MMP_RS06670 -0.7 -2.6 glucose-6-phosphate isomerase compare
MMP_RS08435 -0.7 -1.3 Era-like GTP-binding protein compare
MMP_RS00965 -0.7 -1.7 hypothetical protein compare
MMP_RS06860 -0.7 -1.3 4Fe-4S binding protein compare
MMP_RS07695 -0.7 -3.1 DUF3236 domain-containing protein compare
MMP_RS05445 -0.7 -3.3 CoB--CoM heterodisulfide reductase subunit B compare
MMP_RS00725 -0.7 -3.3 5 10-methenyltetrahydromethanopterin hydrogenase cofactor biosynthesis protein HmdC compare
MMP_RS06215 -0.7 -1.4 30S ribosomal protein S6e compare
MMP_RS01085 -0.7 -1.2 hypothetical protein compare
MMP_RS08645 -0.7 -3.5 UPF0179 family protein compare
MMP_RS01905 -0.7 -5.3 glycosyltransferase compare


Specific Phenotypes

None in this experiment

For Methanococcus maripaludis S2 in nutrient t1 experiments

For nutrient t1 Sodium acetate across organisms