Experiment set4IT009 for Ralstonia sp. UNC404CL21Col

Compare to:

soil EcoFAB sample 2; outgrowth in LB

200 most important genes:

  gene name fitness t score description  
ABZR87_RS02655 -7.5 -5.2 anti-sigma factor compare
ABZR87_RS21795 -7.0 -4.9 NUDIX domain-containing protein compare
ABZR87_RS14505 -6.6 -4.6 phosphoribosylanthranilate isomerase compare
ABZR87_RS22920 -5.8 -4.0 phosphogluconate dehydratase compare
ABZR87_RS02145 -5.5 -3.4 aminodeoxychorismate/anthranilate synthase component II compare
ABZR87_RS02160 -5.5 -7.3 indole-3-glycerol phosphate synthase TrpC compare
ABZR87_RS05305 -5.4 -11.6 TetR family transcriptional regulator compare
ABZR87_RS10170 -5.4 -3.7 RseA family anti-sigma factor compare
ABZR87_RS08630 -5.2 -8.7 dihydroorotase compare
ABZR87_RS02155 -5.2 -7.4 anthranilate phosphoribosyltransferase compare
ABZR87_RS21245 -5.0 -1.6 1,2-phenylacetyl-CoA epoxidase subunit PaaD compare
ABZR87_RS01745 -5.0 -6.0 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD compare
ABZR87_RS17145 -4.8 -13.5 AMP nucleosidase compare
ABZR87_RS14500 -4.8 -11.7 tryptophan synthase subunit beta compare
ABZR87_RS20440 -4.8 -1.5 F0F1 ATP synthase subunit epsilon compare
ABZR87_RS14540 -4.8 -7.3 3-isopropylmalate dehydratase large subunit compare
ABZR87_RS01255 -4.8 -12.0 LysR substrate-binding domain-containing protein compare
ABZR87_RS17650 -4.7 -6.8 TetR/AcrR family transcriptional regulator compare
ABZR87_RS10550 -4.6 -2.4 outer membrane protein assembly factor BamC compare
ABZR87_RS14490 -4.6 -8.3 tryptophan synthase subunit alpha compare
ABZR87_RS01225 -4.6 -4.3 YggS family pyridoxal phosphate-dependent enzyme compare
ABZR87_RS13645 -4.6 -1.4 hypothetical protein compare
ABZR87_RS09465 -4.6 -7.0 3-phosphoshikimate 1-carboxyvinyltransferase compare
ABZR87_RS14965 -4.5 -3.1 DUF3619 family protein compare
ABZR87_RS14115 -4.5 -3.4 ATP-dependent zinc metalloprotease FtsH compare
ABZR87_RS22910 -4.5 -3.3 6-phosphogluconolactonase compare
ABZR87_RS21940 -4.5 -1.4 hypothetical protein compare
ABZR87_RS02640 -4.5 -13.1 diaminopimelate decarboxylase compare
ABZR87_RS05100 -4.4 -6.0 RNA polymerase-binding protein DksA compare
ABZR87_RS11010 -4.4 -2.7 oxidative damage protection protein compare
ABZR87_RS04975 -4.3 -3.0 peptide deformylase compare
ABZR87_RS01645 -4.2 -5.5 type II 3-dehydroquinate dehydratase compare
ABZR87_RS00435 -4.2 -2.9 ATP-dependent Clp protease ATP-binding subunit ClpA compare
ABZR87_RS02535 -4.2 -2.9 phospholipid-binding protein MlaC compare
ABZR87_RS02590 -4.1 -10.1 3-dehydroquinate synthase compare
ABZR87_RS02440 -4.1 -8.3 twin-arginine translocase subunit TatC compare
ABZR87_RS08990 -4.0 -7.3 peptidoglycan-associated lipoprotein Pal compare
ABZR87_RS13705 -4.0 -2.1 integration host factor subunit alpha compare
ABZR87_RS10175 -4.0 -6.3 MucB/RseB C-terminal domain-containing protein compare
ABZR87_RS02595 -3.9 -8.1 shikimate kinase compare
ABZR87_RS08645 -3.9 -1.2 dTDP-glucose 4,6-dehydratase compare
ABZR87_RS07005 -3.9 -2.7 lipoprotein insertase outer membrane protein LolB compare
ABZR87_RS02385 -3.9 -6.9 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
ABZR87_RS08970 -3.9 -7.8 protein TolQ compare
ABZR87_RS13285 -3.9 -9.6 polyhydroxyalkanoate synthesis repressor PhaR compare
ABZR87_RS20555 -3.8 -4.0 helix-turn-helix transcriptional regulator compare
ABZR87_RS07380 -3.8 -16.1 FAD/FMN-binding oxidoreductase compare
ABZR87_RS02075 -3.8 -2.8 23S ribosomal RNA compare
ABZR87_RS01240 -3.8 -9.6 catalase/peroxidase HPI compare
ABZR87_RS21285 -3.8 -2.1 TetR/AcrR family transcriptional regulator compare
ABZR87_RS16080 -3.7 -2.1 P-II family nitrogen regulator compare
ABZR87_RS14605 -3.7 -12.3 aconitate hydratase AcnA compare
ABZR87_RS16185 -3.7 -2.5 dCTP deaminase compare
ABZR87_RS09515 -3.7 -2.5 cysteine synthase CysM compare
ABZR87_RS08640 -3.7 -5.0 symmetrical bis(5'-nucleosyl)-tetraphosphatase compare
ABZR87_RS00325 -3.7 -4.0 peptidylprolyl isomerase compare
ABZR87_RS07050 -3.7 -1.9 PTS IIA-like nitrogen regulatory protein PtsN compare
ABZR87_RS16170 -3.6 -2.5 argininosuccinate lyase compare
ABZR87_RS09895 -3.6 -1.9 DUF1841 family protein compare
ABZR87_RS13790 -3.6 -9.9 chorismate synthase compare
ABZR87_RS01285 -3.6 -1.8 preprotein translocase subunit YajC compare
ABZR87_RS07035 -3.6 -4.3 RNase adapter RapZ compare
ABZR87_RS04995 -3.5 -2.4 DNA topoisomerase III compare
ABZR87_RS04865 -3.5 -4.2 methylenetetrahydrofolate reductase [NAD(P)H] compare
ABZR87_RS16730 -3.5 -5.1 2-methylaconitate cis-trans isomerase PrpF compare
ABZR87_RS06845 -3.4 -8.6 heme o synthase compare
ABZR87_RS08795 -3.4 -4.7 undecaprenyl-diphosphate phosphatase compare
ABZR87_RS16125 -3.4 -4.3 heme biosynthesis protein HemY compare
ABZR87_RS06705 -3.4 -14.8 glutamate--cysteine ligase compare
ABZR87_RS03565 -3.4 -8.2 TetR/AcrR family transcriptional regulator compare
ABZR87_RS12785 -3.3 -4.0 endopeptidase La compare
ABZR87_RS11245 -3.3 -5.0 translational GTPase TypA compare
ABZR87_RS13475 -3.3 -8.3 PAS domain S-box protein compare
ABZR87_RS02545 -3.3 -8.0 outer membrane lipid asymmetry maintenance protein MlaD compare
ABZR87_RS14510 -3.3 -4.5 tRNA pseudouridine(38-40) synthase TruA compare
ABZR87_RS14530 -3.3 -7.3 3-isopropylmalate dehydrogenase compare
ABZR87_RS22690 -3.3 -3.2 XRE family transcriptional regulator compare
ABZR87_RS02550 -3.2 -5.2 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
ABZR87_RS09710 -3.1 -3.4 tRNA-Arg compare
ABZR87_RS06715 -3.1 -4.0 PTS sugar transporter subunit IIA compare
ABZR87_RS13175 -3.1 -1.9 tRNA-Leu compare
ABZR87_RS02445 -3.1 -4.7 Sec-independent protein translocase protein TatB compare
ABZR87_RS04880 -3.1 -5.3 5-formyltetrahydrofolate cyclo-ligase compare
ABZR87_RS18105 -3.0 -1.8 hypothetical protein compare
ABZR87_RS04940 -2.9 -6.8 PAS domain-containing sensor histidine kinase compare
ABZR87_RS08985 -2.9 -12.1 Tol-Pal system beta propeller repeat protein TolB compare
ABZR87_RS01685 -2.9 -6.3 histone H1-like DNA-binding protein compare
ABZR87_RS07665 -2.9 -7.5 aminopeptidase P N-terminal domain-containing protein compare
ABZR87_RS02380 -2.9 -10.4 cytochrome bc complex cytochrome b subunit compare
ABZR87_RS16735 -2.9 -10.4 Fe/S-dependent 2-methylisocitrate dehydratase AcnD compare
ABZR87_RS08695 -2.8 -10.8 capsular polysaccharide biosynthesis protein CapF compare
ABZR87_RS03850 -2.8 -3.5 ureidoglycolate lyase compare
ABZR87_RS11790 -2.8 -2.6 cell division protein ZipA C-terminal FtsZ-binding domain-containing protein compare
ABZR87_RS21700 -2.8 -2.1 hypothetical protein compare
ABZR87_RS02375 -2.8 -9.3 cytochrome c1 compare
ABZR87_RS10620 -2.8 -3.3 serine O-acetyltransferase compare
ABZR87_RS12790 -2.8 -2.7 ATP-dependent Clp protease ATP-binding subunit ClpX compare
ABZR87_RS06400 -2.7 -4.3 response regulator transcription factor compare
ABZR87_RS13495 -2.7 -5.5 exodeoxyribonuclease III compare
ABZR87_RS03865 -2.7 -8.6 GntR family transcriptional regulator compare
ABZR87_RS02140 -2.7 -11.0 anthranilate synthase component I compare
ABZR87_RS02565 -2.7 -4.7 glutamate synthase subunit beta compare
ABZR87_RS05635 -2.7 -12.7 muropeptide transporter compare
ABZR87_RS02555 -2.7 -7.4 ABC transporter ATP-binding protein compare
ABZR87_RS11435 -2.6 -2.6 Mth938-like domain-containing protein compare
ABZR87_RS13050 -2.6 -1.2 GpE family phage tail protein compare
ABZR87_RS16960 -2.6 -4.4 HAMP domain-containing sensor histidine kinase compare
ABZR87_RS07055 -2.6 -7.3 ribosome-associated translation inhibitor RaiA compare
ABZR87_RS01245 -2.6 -1.8 Dps family protein compare
ABZR87_RS09935 -2.6 -1.8 amino acid aminotransferase compare
ABZR87_RS14970 -2.6 -3.8 DUF3106 domain-containing protein compare
ABZR87_RS02540 -2.6 -7.3 VacJ family lipoprotein compare
ABZR87_RS10195 -2.6 -2.6 signal peptidase I compare
ABZR87_RS02570 -2.5 -13.6 glutamate synthase-related protein compare
ABZR87_RS01615 -2.5 -1.0 RNB domain-containing ribonuclease compare
ABZR87_RS10120 -2.5 -1.3 YceD family protein compare
ABZR87_RS08980 -2.5 -3.2 cell envelope integrity protein TolA compare
ABZR87_RS12800 -2.4 -2.9 trigger factor compare
ABZR87_RS04720 -2.4 -7.0 IclR family transcriptional regulator compare
ABZR87_RS21045 -2.4 -4.0 cyclopropane-fatty-acyl-phospholipid synthase family protein compare
ABZR87_RS22485 -2.4 -4.0 FAD-dependent oxidoreductase compare
ABZR87_RS07470 -2.4 -6.8 TetR/AcrR family transcriptional regulator compare
ABZR87_RS09615 -2.4 -1.2 50S ribosomal protein L19 compare
ABZR87_RS01675 -2.4 -1.6 carbohydrate kinase family protein compare
ABZR87_RS08625 -2.4 -1.6 aspartate carbamoyltransferase catalytic subunit compare
ABZR87_RS00795 -2.3 -3.6 site-specific tyrosine recombinase XerD compare
ABZR87_RS09450 -2.3 -4.1 prephenate dehydratase compare
ABZR87_RS13315 -2.3 -7.0 RluA family pseudouridine synthase compare
ABZR87_RS05645 -2.3 -4.8 SDR family oxidoreductase compare
ABZR87_RS16820 -2.3 -4.4 TetR/AcrR family transcriptional regulator compare
ABZR87_RS11940 -2.3 -2.2 SsrA-binding protein SmpB compare
ABZR87_RS05060 -2.3 -3.4 DUF484 family protein compare
ABZR87_RS03330 -2.2 -3.4 MarR family transcriptional regulator compare
ABZR87_RS15680 -2.2 -7.3 DNA polymerase I compare
ABZR87_RS14950 -2.2 -1.4 acetolactate synthase small subunit compare
ABZR87_RS04270 -2.2 -3.7 4a-hydroxytetrahydrobiopterin dehydratase compare
ABZR87_RS10190 -2.2 -7.4 translation elongation factor 4 compare
ABZR87_RS21950 -2.2 -5.0 hypothetical protein compare
ABZR87_RS07760 -2.2 -1.4 HlyC/CorC family transporter compare
ABZR87_RS02220 -2.1 -7.4 redox-regulated ATPase YchF compare
ABZR87_RS17310 -2.1 -3.4 PadR family transcriptional regulator compare
ABZR87_RS13445 -2.1 -3.0 phasin family protein compare
ABZR87_RS10400 -2.1 -1.4 hypothetical protein compare
ABZR87_RS02630 -2.1 -4.9 iron donor protein CyaY compare
ABZR87_RS22150 -2.1 -4.7 MarR family transcriptional regulator compare
ABZR87_RS09940 -2.1 -7.5 excinuclease ABC subunit UvrB compare
ABZR87_RS08950 -2.1 -2.8 transcriptional regulator NrdR compare
ABZR87_RS14375 -2.1 -3.7 fumarate hydratase compare
ABZR87_RS07510 -2.1 -4.1 LysR family transcriptional regulator compare
ABZR87_RS07635 -2.1 -1.4 crossover junction endodeoxyribonuclease RuvC compare
ABZR87_RS15705 -2.1 -3.7 UvrD-helicase domain-containing protein compare
ABZR87_RS07360 -2.1 -6.0 threonine ammonia-lyase, biosynthetic compare
ABZR87_RS13770 -2.0 -5.8 CoA transferase subunit A compare
ABZR87_RS00360 -2.0 -2.1 acyl-CoA desaturase compare
ABZR87_RS12965 -2.0 -3.2 tail protein X compare
ABZR87_RS00970 -2.0 -1.3 molecular chaperone DnaJ compare
ABZR87_RS11470 -1.9 -3.7 molybdenum cofactor biosynthesis protein MoaE compare
ABZR87_RS05590 -1.9 -1.3 orotate phosphoribosyltransferase compare
ABZR87_RS11815 -1.9 -7.0 [protein-PII] uridylyltransferase compare
ABZR87_RS09975 -1.9 -2.8 Fe-S cluster assembly transcriptional regulator IscR compare
ABZR87_RS14190 -1.9 -7.9 DUF2589 domain-containing protein compare
ABZR87_RS16055 -1.9 -3.7 outer membrane lipoprotein chaperone LolA compare
ABZR87_RS20665 -1.9 -2.2 IclR family transcriptional regulator compare
ABZR87_RS18400 -1.9 -1.6 hypothetical protein compare
ABZR87_RS00300 -1.8 -4.7 ABC transporter ATP-binding protein compare
ABZR87_RS09445 -1.8 -6.0 3-phosphoserine/phosphohydroxythreonine transaminase compare
ABZR87_RS07625 -1.8 -2.1 Holliday junction branch migration protein RuvA compare
ABZR87_RS15095 -1.8 -6.7 allantoinase PuuE compare
ABZR87_RS11125 -1.8 -5.0 cell division protein ZapE compare
ABZR87_RS00205 -1.8 -2.4 DUF934 domain-containing protein compare
ABZR87_RS12955 -1.8 -3.5 terminase endonuclease subunit compare
ABZR87_RS01035 -1.8 -2.8 histidine utilization repressor compare
ABZR87_RS20880 -1.8 -5.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase compare
ABZR87_RS11195 -1.8 -5.6 pseudouridine synthase compare
ABZR87_RS12795 -1.8 -4.2 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
ABZR87_RS00835 -1.7 -1.2 argininosuccinate synthase compare
ABZR87_RS12120 -1.7 -1.1 isocitrate lyase/phosphoenolpyruvate mutase family protein compare
ABZR87_RS16660 -1.7 -3.7 helix-turn-helix domain-containing protein compare
ABZR87_RS21060 -1.7 -3.6 DUF1365 domain-containing protein compare
ABZR87_RS10785 -1.7 -2.9 exodeoxyribonuclease V subunit beta compare
ABZR87_RS07965 -1.7 -3.8 recombinase RecA compare
ABZR87_RS10230 -1.7 -3.4 beta-N-acetylhexosaminidase compare
ABZR87_RS00875 -1.7 -3.8 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
ABZR87_RS14680 -1.7 -1.6 SDR family oxidoreductase compare
ABZR87_RS08585 -1.7 -1.5 chemotaxis protein CheW compare
ABZR87_RS21065 -1.7 -6.3 FAD-dependent oxidoreductase compare
ABZR87_RS00340 -1.7 -1.3 50S ribosomal protein L33 compare
ABZR87_RS06645 -1.7 -1.2 TlpA disulfide reductase family protein compare
ABZR87_RS00440 -1.7 -5.6 ATP-dependent Clp protease adapter ClpS compare
ABZR87_RS07705 -1.7 -2.5 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
ABZR87_RS20875 -1.7 -3.5 LysR family transcriptional regulator compare
ABZR87_RS11970 -1.7 -1.2 hypothetical protein compare
ABZR87_RS22970 -1.7 -6.4 cystathionine gamma-synthase family protein compare
ABZR87_RS09625 -1.7 -4.3 CobD/CbiB family protein compare
ABZR87_RS07675 -1.7 -5.0 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU compare
ABZR87_RS14575 -1.7 -2.7 GntR family transcriptional regulator compare
ABZR87_RS08650 -1.7 -6.0 dTDP-4-dehydrorhamnose reductase compare
ABZR87_RS05350 -1.7 -1.1 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
ABZR87_RS13300 -1.7 -5.5 class I poly(R)-hydroxyalkanoic acid synthase compare
ABZR87_RS20370 -1.6 -1.0 ABC transporter ATP-binding protein compare


Specific Phenotypes

For 2 genes in this experiment