Experiment set4IT008 for Pseudomonas fluorescens SBW25-INTG

Compare to:

N-Acetyl-D-Glucosamine nitrogen source; with MOPS

200 most important genes:

  gene name fitness t score description  
PFLU_RS03645 -5.4 -3.8 tetratricopeptide repeat protein compare
PFLU_RS01645 -5.3 -5.2 S41 family peptidase compare
PFLU_RS30645 -5.0 -2.5 type II toxin-antitoxin system HicA family toxin compare
PFLU_RS21575 -5.0 -1.9 pyrimidine/purine nucleoside phosphorylase compare
PFLU_RS23590 -5.0 -1.9 gluconokinase compare
PFLU_RS13750 -4.7 -1.8 hypothetical protein compare
PFLU_RS25190 -4.7 -2.0 hypothetical protein compare
PFLU_RS31475 -4.6 -2.2 hypothetical protein compare
PFLU_RS07525 -4.4 -1.9 cyclic nucleotide-binding domain-containing protein compare
PFLU_RS18700 -4.4 -1.9 hypothetical protein compare
PFLU_RS04835 -4.4 -1.0 hypothetical protein compare
PFLU_RS19550 -4.3 -0.9 ABC transporter ATP-binding protein compare
PFLU_RS17265 -4.2 -1.8 hypothetical protein compare
PFLU_RS16710 -4.2 -2.6 nitrite reductase small subunit NirD compare
PFLU_RS00530 -4.0 -1.5 DUF2388 domain-containing protein compare
PFLU_RS13825 -4.0 -1.2 hypothetical protein compare
PFLU_RS31530 -3.9 -0.8 transposase compare
PFLU_RS25925 -3.8 -1.8 RnfH family protein compare
PFLU_RS02860 -3.8 -1.8 urease subunit beta compare
PFLU_RS07910 -3.7 -1.4 type 1 fimbrial protein compare
PFLU_RS02490 -3.7 -11.9 phosphoserine phosphatase SerB compare
PFLU_RS26290 -3.7 -0.8 2Fe-2S iron-sulfur cluster binding domain-containing protein compare
PFLU_RS29880 -3.7 -14.1 acetyl-CoA carboxylase biotin carboxylase subunit compare
PFLU_RS13105 -3.6 -2.8 nuclear transport factor 2 family protein compare
PFLU_RS31755 -3.6 -1.1 hypothetical protein compare
PFLU_RS13715 -3.5 -1.3 MmcQ/YjbR family DNA-binding protein compare
PFLU_RS28650 -3.5 -7.2 RNA pyrophosphohydrolase compare
PFLU_RS30900 -3.5 -1.5 hypothetical protein compare
PFLU_RS26545 -3.5 -11.7 sel1 repeat family protein compare
PFLU_RS24125 -3.4 -2.4 cold-shock protein compare
PFLU_RS01685 -3.4 -4.9 nitrogen regulation protein NR(I) compare
PFLU_RS23070 -3.4 -1.0 50S ribosomal protein L32 compare
PFLU_RS25920 -3.4 -3.4 outer membrane protein assembly factor BamE compare
PFLU_RS31290 -3.4 -1.5 EamA family transporter compare
PFLU_RS14550 -3.4 -8.9 UTP--glucose-1-phosphate uridylyltransferase GalU compare
PFLU_RS18505 -3.3 -3.9 uroporphyrinogen-III C-methyltransferase compare
PFLU_RS24485 -3.2 -9.9 hypothetical protein compare
PFLU_RS29515 -3.2 -10.5 RidA family protein compare
PFLU_RS28535 -3.2 -15.3 dihydroxy-acid dehydratase compare
PFLU_RS28965 -3.2 -10.3 5-formyltetrahydrofolate cyclo-ligase compare
PFLU_RS13640 -3.2 -2.9 isochorismatase family protein compare
PFLU_RS12980 -3.2 -7.6 nitrite/sulfite reductase compare
PFLU_RS23065 -3.1 -9.9 phosphate acyltransferase PlsX compare
PFLU_RS28390 -3.1 -9.7 methionine biosynthesis protein MetW compare
PFLU_RS03970 -3.1 -9.5 carboxylating nicotinate-nucleotide diphosphorylase compare
PFLU_RS22740 -3.1 -2.1 phosphoadenylyl-sulfate reductase compare
PFLU_RS01675 -3.1 -3.1 tRNA (cytidine(34)-2'-O)-methyltransferase compare
PFLU_RS04070 -3.1 -2.1 peptide chain release factor 3 compare
PFLU_RS30160 -3.0 -2.1 ParB/RepB/Spo0J family partition protein compare
PFLU_RS14125 -3.0 -3.4 lysozyme compare
PFLU_RS20730 -2.9 -1.3 hypothetical protein compare
PFLU_RS31590 -2.9 -1.3 hypothetical protein compare
PFLU_RS25640 -2.9 -12.6 ketol-acid reductoisomerase compare
PFLU_RS23920 -2.9 -2.3 septation protein A compare
PFLU_RS28310 -2.9 -1.2 response regulator compare
PFLU_RS28695 -2.9 -7.0 phosphoglycerate dehydrogenase compare
PFLU_RS29885 -2.9 -8.5 LysR family transcriptional regulator compare
PFLU_RS18725 -2.8 -1.0 alpha/beta hydrolase compare
PFLU_RS12975 -2.8 -5.0 DUF934 domain-containing protein compare
PFLU_RS22595 -2.8 -1.9 OmpA family protein compare
PFLU_RS29875 -2.8 -11.6 oxaloacetate decarboxylase subunit alpha compare
PFLU_RS03610 -2.8 -1.9 redox-regulated ATPase YchF compare
PFLU_RS27650 -2.8 -12.5 biotin synthase BioB compare
PFLU_RS23305 -2.7 -10.3 arginine N-succinyltransferase compare
PFLU_RS01875 -2.7 -0.8 16S rRNA (uracil(1498)-N(3))-methyltransferase compare
PFLU_RS18000 -2.7 -1.3 AhpC/TSA family protein compare
PFLU_RS06265 -2.7 -16.9 [protein-PII] uridylyltransferase compare
PFLU_RS07225 -2.6 -13.2 L-aspartate oxidase compare
PFLU_RS25735 -2.6 -6.5 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS04715 -2.6 -5.3 D-alanine--D-alanine ligase compare
PFLU_RS24670 -2.6 -1.9 HigA family addiction module antidote protein compare
PFLU_RS22105 -2.6 -5.2 cysteine synthase CysM compare
PFLU_RS31440 -2.6 -1.1 hypothetical protein compare
PFLU_RS03075 -2.6 -1.1 translation initiation factor Sui1 compare
PFLU_RS02365 -2.6 -10.5 glycosyltransferase compare
PFLU_RS20510 -2.5 -11.7 O-succinylhomoserine sulfhydrylase compare
PFLU_RS03995 -2.5 -0.9 hypothetical protein compare
PFLU_RS28645 -2.5 -9.2 phosphoenolpyruvate--protein phosphotransferase compare
PFLU_RS03555 -2.5 -0.8 EscS/YscS/HrcS family type III secretion system export apparatus protein compare
PFLU_RS25750 -2.5 -5.5 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PFLU_RS24825 -2.5 -3.1 Fe-S cluster assembly protein IscX compare
PFLU_RS22520 -2.5 -1.6 GntR family transcriptional regulator compare
PFLU_RS20290 -2.4 -0.9 integration host factor subunit alpha compare
PFLU_RS11840 -2.4 -2.8 RNA polymerase sigma factor compare
PFLU_RS25360 -2.4 -6.3 glutamate 5-kinase compare
PFLU_RS04415 -2.4 -2.4 LPS export ABC transporter periplasmic protein LptC compare
PFLU_RS24335 -2.4 -11.1 type I glyceraldehyde-3-phosphate dehydrogenase compare
PFLU_RS07540 -2.4 -2.0 class II glutamine amidotransferase compare
PFLU_RS22580 -2.4 -9.8 NarK/NasA family nitrate transporter conserved
PFLU_RS29560 -2.4 -1.2 hypothetical protein compare
PFLU_RS09055 -2.3 -1.6 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
PFLU_RS01690 -2.3 -5.3 nitrogen regulation protein NR(II) compare
PFLU_RS25290 -2.3 -4.8 hypothetical protein compare
PFLU_RS08285 -2.3 -3.8 hypothetical protein compare
PFLU_RS13690 -2.3 -4.0 AAA family ATPase compare
PFLU_RS15910 -2.3 -1.3 homoprotocatechuate degradation operon regulator HpaR compare
PFLU_RS25865 -2.3 -2.6 YhbY family RNA-binding protein compare
PFLU_RS27630 -2.3 -3.6 dethiobiotin synthase compare
PFLU_RS31650 -2.3 -1.9 hypothetical protein compare
PFLU_RS29400 -2.3 -1.6 DUF1127 domain-containing protein compare
PFLU_RS17580 -2.3 -2.2 repressor LexA compare
PFLU_RS10595 -2.2 -2.8 hypothetical protein compare
PFLU_RS21495 -2.2 -1.5 TlpA family protein disulfide reductase compare
PFLU_RS28655 -2.2 -11.3 HAD family hydrolase compare
PFLU_RS22030 -2.2 -2.7 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
PFLU_RS19935 -2.2 -1.7 type II secretion system protein GspF compare
PFLU_RS17370 -2.2 -3.2 hypothetical protein compare
PFLU_RS16715 -2.2 -7.8 nitrite reductase large subunit conserved
PFLU_RS31780 -2.1 -1.6 hypothetical protein compare
PFLU_RS10705 -2.1 -4.3 GNAT family N-acetyltransferase compare
PFLU_RS01895 -2.1 -3.8 phosphoribosyl-ATP diphosphatase compare
PFLU_RS01910 -2.1 -1.5 sterol-binding protein compare
PFLU_RS02980 -2.1 -1.5 precorrin-8X methylmutase compare
PFLU_RS16785 -2.1 -1.8 GAF domain-containing protein compare
PFLU_RS27645 -2.1 -8.2 8-amino-7-oxononanoate synthase compare
PFLU_RS02875 -2.0 -4.0 urease subunit gamma compare
PFLU_RS07785 -2.0 -9.9 VacJ family lipoprotein compare
PFLU_RS10325 -2.0 -6.3 MFS transporter compare
PFLU_RS08505 -2.0 -5.4 protease HtpX compare
PFLU_RS28165 -2.0 -8.6 methylenetetrahydrofolate reductase [NAD(P)H] compare
PFLU_RS17970 -2.0 -2.7 LysR family transcriptional regulator compare
PFLU_RS01610 -2.0 -8.0 imidazole glycerol phosphate synthase subunit HisH compare
PFLU_RS01390 -2.0 -5.6 3'(2'),5'-bisphosphate nucleotidase CysQ compare
PFLU_RS05315 -1.9 -2.4 GntR family transcriptional regulator compare
PFLU_RS24330 -1.9 -6.3 phosphogluconate dehydratase compare
PFLU_RS23445 -1.9 -1.8 DUF1003 domain-containing protein compare
PFLU_RS01965 -1.9 -1.0 ATP-dependent protease subunit HslV compare
PFLU_RS03765 -1.9 -6.6 sulfate adenylyltransferase subunit CysD compare
PFLU_RS01020 -1.9 -1.9 LysR family transcriptional regulator compare
PFLU_RS27440 -1.9 -4.8 nucleotidyltransferase family protein compare
PFLU_RS06320 -1.9 -2.2 OmpH family outer membrane protein compare
PFLU_RS04445 -1.9 -6.2 ABC transporter substrate-binding protein compare
PFLU_RS09980 -1.9 -9.9 peptidase S41 compare
PFLU_RS04440 -1.9 -8.4 outer membrane lipid asymmetry maintenance protein MlaD compare
PFLU_RS30985 -1.9 -2.0 hypothetical protein compare
PFLU_RS15310 -1.9 -1.5 YgdI/YgdR family lipoprotein compare
PFLU_RS21015 -1.9 -4.0 alpha/beta fold hydrolase compare
PFLU_RS04430 -1.9 -7.1 ATP-binding cassette domain-containing protein compare
PFLU_RS28385 -1.9 -7.1 homoserine O-acetyltransferase compare
PFLU_RS11060 -1.8 -3.2 DUF3592 domain-containing protein compare
PFLU_RS25755 -1.8 -3.5 pantoate--beta-alanine ligase compare
PFLU_RS26440 -1.8 -1.5 acyl carrier protein compare
PFLU_RS31510 -1.8 -1.1 transcriptional regulator compare
PFLU_RS00415 -1.8 -1.2 thiol:disulfide interchange protein DsbA/DsbL compare
PFLU_RS11490 -1.8 -2.2 ABC transporter ATP-binding protein compare
PFLU_RS02865 -1.8 -2.9 GNAT family N-acetyltransferase compare
PFLU_RS29195 -1.8 -5.6 heme biosynthesis protein HemY compare
PFLU_RS29095 -1.8 -11.4 polyphosphate kinase 1 compare
PFLU_RS06235 -1.8 -2.9 SufE family protein compare
PFLU_RS07650 -1.8 -7.7 fatty acid oxidation complex subunit alpha FadB compare
PFLU_RS05790 -1.8 -3.0 hypothetical protein compare
PFLU_RS21690 -1.8 -2.6 DNA-binding protein compare
PFLU_RS05835 -1.8 -3.5 phage tail protein compare
PFLU_RS00180 -1.8 -5.0 tryptophan synthase subunit beta compare
PFLU_RS19175 -1.8 -6.1 trigger factor compare
PFLU_RS12260 -1.8 -0.7 hypothetical protein compare
PFLU_RS10045 -1.7 -2.2 hypothetical protein compare
PFLU_RS08155 -1.7 -3.4 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
PFLU_RS11830 -1.7 -1.8 hypothetical protein compare
PFLU_RS03770 -1.7 -6.7 sulfate adenylyltransferase subunit CysN compare
PFLU_RS09945 -1.7 -2.7 catalase family protein compare
PFLU_RS30590 -1.7 -0.8 hypothetical protein compare
PFLU_RS23310 -1.7 -6.5 arginine/ornithine succinyltransferase subunit alpha compare
PFLU_RS12825 -1.7 -1.7 peptidyl-prolyl cis-trans isomerase compare
PFLU_RS25760 -1.7 -6.9 glucose-6-phosphate isomerase compare
PFLU_RS02775 -1.7 -0.9 urease accessory protein UreF compare
PFLU_RS26570 -1.7 -4.1 HlyC/CorC family transporter compare
PFLU_RS14995 -1.7 -1.1 response regulator transcription factor compare
PFLU_RS01615 -1.7 -3.2 DUF2164 domain-containing protein compare
PFLU_RS30030 -1.7 -0.7 membrane protein compare
PFLU_RS07255 -1.7 -2.5 sulfurtransferase TusA family protein compare
PFLU_RS24090 -1.7 -1.2 Holliday junction branch migration protein RuvA compare
PFLU_RS18530 -1.7 -3.9 DNA translocase FtsK compare
PFLU_RS27400 -1.7 -2.7 ABC transporter permease compare
PFLU_RS22190 -1.7 -0.6 hypothetical protein compare
PFLU_RS27370 -1.7 -6.9 anthranilate phosphoribosyltransferase compare
PFLU_RS04195 -1.7 -1.6 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
PFLU_RS29360 -1.7 -1.2 cytochrome c5 family protein compare
PFLU_RS25715 -1.7 -7.3 RNA polymerase-binding protein DksA compare
PFLU_RS07645 -1.6 -3.8 hypothetical protein compare
PFLU_RS30445 -1.6 -3.6 hypothetical protein compare
PFLU_RS24025 -1.6 -5.5 quinolinate synthase NadA compare
PFLU_RS21060 -1.6 -2.5 TetR/AcrR family transcriptional regulator compare
PFLU_RS30165 -1.6 -6.3 ParA family protein compare
PFLU_RS01070 -1.6 -2.8 alpha/beta hydrolase compare
PFLU_RS18655 -1.6 -1.1 NADH-quinone oxidoreductase subunit J compare
PFLU_RS30825 -1.6 -2.7 hypothetical protein compare
PFLU_RS14445 -1.6 -4.3 AzlC family ABC transporter permease compare
PFLU_RS08760 -1.6 -2.2 phosphonate C-P lyase system protein PhnG compare
PFLU_RS24305 -1.6 -1.5 antibiotic biosynthesis monooxygenase compare
PFLU_RS23585 -1.6 -5.1 GntP family permease compare
PFLU_RS28685 -1.6 -3.7 fumarylacetoacetate hydrolase family protein compare
PFLU_RS28690 -1.6 -6.8 FAD-binding oxidoreductase compare
PFLU_RS06680 -1.6 -3.1 hypothetical protein compare
PFLU_RS17505 -1.6 -1.7 hypothetical protein compare
PFLU_RS26770 -1.6 -7.1 DedA family protein compare
PFLU_RS06955 -1.6 -3.8 helix-turn-helix domain-containing protein compare
PFLU_RS31710 -1.6 -1.0 hypothetical protein compare
PFLU_RS29070 -1.6 -3.4 hypothetical protein compare
PFLU_RS15000 -1.6 -1.9 HAMP domain-containing histidine kinase compare


Specific Phenotypes

For 6 genes in this experiment

For nitrogen source D-Glucose in Pseudomonas fluorescens SBW25-INTG

For nitrogen source D-Glucose across organisms