Experiment set4IT008 for Methanococcus maripaludis S2

Compare to:

H2 deepwell casamino acid FREE

200 most important genes:

  gene name fitness t score description  
MMP_RS03450 -3.2 -3.9 glycine synthesis protein GlyXS (from data) compare
MMP_RS07555 -3.2 -1.1 monovalent cation/H+ antiporter subunit E compare
MMP_RS03315 -2.8 -1.8 ferrous iron transport protein A compare
MMP_RS07345 -2.8 -7.5 glycine synthesis protein GlyXL (from data) compare
MMP_RS05500 -2.7 -12.3 2-isopropylmalate synthase compare
MMP_RS07845 -2.7 -3.4 LL-diaminopimelate aminotransferase compare
MMP_RS03035 -2.6 -6.1 4-hydroxy-tetrahydrodipicolinate synthase compare
MMP_RS01020 -2.6 -1.4 3 4-dihydroxy-2-butanone-4-phosphate synthase compare
MMP_RS05930 -2.5 -3.6 3-isopropylmalate dehydratase large subunit compare
MMP_RS01455 -2.4 -11.2 nickel pincer cofactor biosynthesis protein LarC compare
MMP_RS08745 -2.3 -7.4 CDP-2 3-bis-(O-geranylgeranyl)-sn-glycerol synthase compare
MMP_RS03445 -2.3 -1.3 methanogenesis marker 17 protein compare
MMP_RS04685 -2.3 -4.5 DUF126 domain-containing protein compare
MMP_RS01545 -2.3 -1.5 CBS domain-containing protein compare
MMP_RS00750 -2.2 -3.0 fumarate hydratase compare
MMP_RS05425 -2.2 -5.6 monovalent cation/H+ antiporter complex subunit F compare
MMP_RS06270 -2.2 -7.8 TIGR00300 family protein compare
MMP_RS01265 -2.1 -3.0 hypothetical protein compare
MMP_RS01175 -2.1 -5.3 triphosphoribosyl-dephospho-CoA synthase compare
MMP_RS04605 -2.1 -6.3 cobalt ECF transporter T component CbiQ compare
MMP_RS02355 -2.0 -3.2 30S ribosomal protein S27ae compare
MMP_RS01700 -2.0 -1.4 dihydroxy-acid dehydratase compare
MMP_RS05515 -2.0 -8.3 cyclic pyranopterin monophosphate synthase MoaC compare
MMP_RS03015 -2.0 -11.0 GTP 3' 8-cyclase MoaA compare
MMP_RS01005 -2.0 -1.9 riboflavin synthase compare
MMP_RS04620 -2.0 -13.0 cobalt transporter CbiM compare
MMP_RS02900 -1.9 -0.9 imidazoleglycerol-phosphate dehydratase HisB compare
MMP_RS04615 -1.9 -4.9 PDGLE domain-containing protein compare
MMP_RS01755 -1.9 -1.6 DUF2097 domain-containing protein compare
MMP_RS02135 -1.9 -5.9 DUF5612 domain-containing protein compare
MMP_RS05555 -1.9 -1.7 DUF4040 domain-containing protein compare
MMP_RS07735 -1.9 -1.1 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha compare
MMP_RS08635 -1.9 -2.7 UbiA family prenyltransferase compare
MMP_RS02195 -1.8 -4.1 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-methylthiotransferase compare
MMP_RS06350 -1.8 -7.7 HesA/MoeB/ThiF family protein compare
MMP_RS02240 -1.8 -3.8 methanogenesis marker 7 protein compare
MMP_RS06355 -1.8 -3.5 molybdenum cofactor biosynthesis protein MoaE compare
MMP_RS03250 -1.8 -5.4 MJ1244 family protein compare
MMP_RS08715 -1.8 -2.3 formylmethanofuran dehydrogenase subunit B compare
MMP_RS01500 -1.8 -2.6 CBS domain-containing protein compare
MMP_RS03700 -1.7 -7.3 sodium:proton antiporter compare
MMP_RS01795 -1.7 -1.9 methanogenesis marker 6 protein compare
MMP_RS01385 -1.7 -0.8 imidazole glycerol phosphate synthase subunit HisH compare
MMP_RS00695 -1.7 -1.0 biotin--[acetyl-CoA-carboxylase] ligase compare
MMP_RS04215 -1.7 -8.7 nickel pincer cofactor biosynthesis protein LarB compare
MMP_RS06375 -1.7 -5.1 ATP-dependent sacrificial sulfur transferase LarE compare
MMP_RS04500 -1.7 -12.7 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
MMP_RS06230 -1.7 -2.8 helix-turn-helix domain-containing protein compare
MMP_RS01225 -1.7 -5.7 DUF5379 domain-containing protein compare
MMP_RS00110 -1.6 -3.3 hypothetical protein compare
MMP_RS07575 -1.6 -4.3 RNA ligase partner protein compare
MMP_RS00305 -1.6 -2.2 phosphoribosyl-ATP diphosphatase compare
MMP_RS08330 -1.6 -7.9 NADH-quinone oxidoreductase subunit H compare
MMP_RS08650 -1.6 -3.7 glutamine--fructose-6-phosphate transaminase (isomerizing) compare
MMP_RS00300 -1.6 -0.8 6 7-dimethyl-8-ribityllumazine synthase compare
MMP_RS02235 -1.6 -10.3 CBS domain-containing protein compare
MMP_RS06625 -1.6 -2.4 DNA primase compare
MMP_RS04790 -1.6 -10.2 4-hydroxy-tetrahydrodipicolinate reductase compare
MMP_RS07630 -1.6 -1.7 ATP-binding cassette domain-containing protein compare
MMP_RS07355 -1.6 -1.2 transcription factor S compare
MMP_RS06285 -1.5 -2.1 precorrin-6Y C5 15-methyltransferase (decarboxylating) subunit CbiT compare
MMP_RS08720 -1.5 -1.8 4Fe-4S binding protein compare
MMP_RS07185 -1.5 -10.0 pyridoxal phosphate-dependent aminotransferase compare
MMP_RS01830 -1.5 -2.0 tRNA-Val compare
MMP_RS02145 -1.5 -7.7 winged helix-turn-helix transcriptional regulator compare
MMP_RS07635 -1.5 -6.6 MogA/MoaB family molybdenum cofactor biosynthesis protein compare
MMP_RS00130 -1.5 -1.4 nickel-responsive transcriptional regulator NikR compare
MMP_RS01195 -1.5 -1.4 metalloregulator ArsR/SmtB family transcription factor compare
MMP_RS07730 -1.5 -2.1 pyruvate synthase subunit beta compare
MMP_RS07755 -1.5 -1.2 DUF555 domain-containing protein compare
MMP_RS07645 -1.5 -6.0 aldehyde dehydrogenase family protein compare
MMP_RS06370 -1.5 -5.3 biotin synthase BioB compare
MMP_RS03390 -1.5 -7.1 malate dehydrogenase compare
MMP_RS03600 -1.5 -1.7 triose-phosphate isomerase compare
MMP_RS06130 -1.5 -4.6 peptidylprolyl isomerase compare
MMP_RS04890 -1.5 -0.9 adenylyltransferase/cytidyltransferase family protein compare
MMP_RS06885 -1.5 -2.7 50S ribosome-binding GTPase compare
MMP_RS07075 -1.5 -4.6 phosphomannomutase/phosphoglucomutase compare
MMP_RS08095 -1.4 -6.0 dethiobiotin synthase compare
MMP_RS01610 -1.4 -3.1 hypothetical protein compare
MMP_RS06400 -1.4 -1.9 4Fe-4S binding protein compare
MMP_RS08105 -1.4 -7.2 6-carboxyhexanoate--CoA ligase compare
MMP_RS02875 -1.4 -8.4 chorismate pyruvate-lyase family protein compare
MMP_RS06295 -1.4 -6.0 methanogenesis marker 14 protein compare
MMP_RS05265 -1.4 -2.5 2-isopropylmalate synthase compare
MMP_RS06895 -1.4 -1.7 selenocysteine-specific translation elongation factor compare
MMP_RS03435 -1.4 -1.4 ketol-acid reductoisomerase compare
MMP_RS08100 -1.4 -7.4 8-amino-7-oxononanoate synthase compare
MMP_RS06730 -1.4 -2.1 phosphopantothenate/pantothenate synthetase compare
MMP_RS06630 -1.4 -1.2 UPF0058 family protein compare
MMP_RS06105 -1.4 -6.7 hydrogenase maturation peptidase HycI compare
MMP_RS06340 -1.4 -6.5 phosphoadenosine phosphosulfate reductase family protein compare
MMP_RS04710 -1.3 -1.3 hypothetical protein compare
MMP_RS00735 -1.3 -4.4 5 10-methenyltetrahydromethanopterin hydrogenase compare
MMP_RS02885 -1.3 -10.7 molybdopterin biosynthesis protein compare
MMP_RS07750 -1.3 -4.3 DUF357 domain-containing protein compare
MMP_RS00535 -1.3 -2.9 TIGR00375 family protein compare
MMP_RS06865 -1.3 -1.8 HypC/HybG/HupF family hydrogenase formation chaperone compare
MMP_RS02010 -1.3 -7.0 PHP domain-containing protein compare
MMP_RS05550 -1.3 -0.6 cation:proton antiporter compare
MMP_RS05540 -1.2 -3.0 hypothetical protein compare
MMP_RS00685 -1.2 -4.1 2-phospho-L-lactate guanylyltransferase compare
MMP_RS07955 -1.2 -4.3 FumA C-terminus/TtdB family hydratase beta subunit compare
MMP_RS05920 -1.2 -0.6 50S ribosomal protein L37e compare
MMP_RS00985 -1.2 -4.4 CDC48 family AAA ATPase compare
MMP_RS07005 -1.2 -0.7 4Fe-4S binding protein compare
MMP_RS03145 -1.2 -6.0 fibrillarin-like rRNA/tRNA 2'-O-methyltransferase compare
MMP_RS07600 -1.2 -2.5 Ni-sirohydrochlorin a c-diamide synthase compare
MMP_RS01220 -1.2 -4.7 hypothetical protein compare
MMP_RS08210 -1.2 -1.8 phosphatidylglycerophosphatase A compare
MMP_RS05950 -1.2 -7.1 nickel-dependent hydrogenase large subunit compare
MMP_RS00810 -1.2 -5.7 topoisomerase DNA-binding C4 zinc finger domain-containing protein compare
MMP_RS07195 -1.2 -6.8 M20 family metallo-hydrolase compare
MMP_RS03580 -1.1 -2.7 signal recognition particle-docking protein FtsY compare
MMP_RS06120 -1.1 -1.9 UPF0147 family protein compare
MMP_RS07725 -1.1 -2.6 4Fe-4S dicluster domain-containing protein compare
MMP_RS01380 -1.1 -2.6 PHP domain-containing protein compare
MMP_RS06700 -1.1 -6.2 hypothetical protein compare
MMP_RS03400 -1.1 -2.5 archease compare
MMP_RS08995 -1.1 -1.4 hypothetical protein compare
MMP_RS08725 -1.1 -2.1 Ni/Fe hydrogenase subunit alpha compare
MMP_RS06925 -1.1 -1.7 ribonuclease VapC4 compare
MMP_RS05925 -1.1 -3.0 small nuclear ribonucleoprotein compare
MMP_RS07390 -1.1 -1.6 cell division protein FtsZ compare
MMP_RS01925 -1.1 -5.6 DUF1616 domain-containing protein compare
MMP_RS02345 -1.1 -2.8 GTP-dependent dephospho-CoA kinase family protein compare
MMP_RS08320 -1.1 -4.9 molybdopterin molybdotransferase MoeA compare
MMP_RS09020 -1.1 -1.4 hypothetical protein compare
MMP_RS08760 -1.0 -2.5 hypothetical protein compare
MMP_RS07385 -1.0 -2.3 protein translocase SEC61 complex subunit gamma compare
MMP_RS02800 -1.0 -2.9 nucleotidyltransferase domain-containing protein compare
MMP_RS04875 -1.0 -3.9 energy-converting hydrogenase B subunit P compare
MMP_RS08355 -1.0 -4.3 Na(+)/H(+) antiporter subunit B compare
MMP_RS08790 -1.0 -1.4 translation initiation factor IF-2 subunit alpha compare
MMP_RS07710 -1.0 -5.0 cell division protein FtsZ compare
MMP_RS03025 -1.0 -3.7 molybdenum cofactor guanylyltransferase compare
MMP_RS04775 -1.0 -2.5 adenosylhomocysteinase compare
MMP_RS00895 -1.0 -2.6 hypothetical protein compare
MMP_RS00900 -1.0 -1.4 50S ribosomal protein L39e compare
MMP_RS04785 -1.0 -6.6 hypothetical protein compare
MMP_RS07540 -0.9 -2.9 CBS domain-containing protein compare
MMP_RS00725 -0.9 -5.1 5 10-methenyltetrahydromethanopterin hydrogenase cofactor biosynthesis protein HmdC compare
MMP_RS07420 -0.9 -3.1 metalloregulator ArsR/SmtB family transcription factor compare
MMP_RS01890 -0.9 -2.5 nucleotide sugar dehydrogenase compare
MMP_RS01900 -0.9 -6.7 hypothetical protein compare
MMP_RS02280 -0.9 -0.7 DUF211 domain-containing protein compare
MMP_RS06020 -0.9 -2.3 archaeoflavoprotein AfpA compare
MMP_RS06680 -0.9 -5.4 Coenzyme F420 hydrogenase/dehydrogenase beta subunit C-terminal domain compare
MMP_RS06705 -0.9 -3.4 formate/nitrite transporter family protein compare
MMP_RS05430 -0.9 -3.3 TIGR00288 family NYN domain-containing protein compare
MMP_RS01840 -0.9 -4.9 TIGR00289 family protein compare
MMP_RS08460 -0.9 -1.7 proteasome-activating nucleotidase compare
MMP_RS08645 -0.8 -3.5 UPF0179 family protein compare
MMP_RS03475 -0.8 -0.5 hypothetical protein compare
MMP_RS08840 -0.8 -5.7 class I SAM-dependent methyltransferase compare
MMP_RS05315 -0.8 -1.7 hypothetical protein compare
MMP_RS08360 -0.8 -3.6 hypothetical protein compare
MMP_RS08435 -0.8 -1.7 Era-like GTP-binding protein compare
MMP_RS04850 -0.8 -6.4 UPF0254 family protein compare
MMP_RS01665 -0.8 -2.1 DUF2111 domain-containing protein compare
MMP_RS06555 -0.8 -1.0 cupin domain-containing protein compare
MMP_RS08345 -0.8 -5.5 4Fe-4S binding protein compare
MMP_RS00315 -0.8 -4.8 Nif3-like dinuclear metal center hexameric protein compare
MMP_RS07545 -0.8 -0.5 HTH domain-containing protein compare
MMP_RS02805 -0.8 -1.1 HEPN domain-containing protein compare
MMP_RS04585 -0.8 -4.2 AIR synthase related protein compare
MMP_RS06475 -0.8 -3.1 FAD-dependent oxidoreductase compare
MMP_RS07695 -0.8 -3.5 DUF3236 domain-containing protein compare
MMP_RS03155 -0.8 -4.4 precorrin-6A reductase compare
MMP_RS00730 -0.8 -2.4 5 10-methenyltetrahydromethanopterin hydrogenase cofactor biosynthesis protein HmdB compare
MMP_RS08600 -0.8 -1.9 flagellar protein D compare
MMP_RS08445 -0.8 -3.1 DUF2099 family protein compare
MMP_RS00850 -0.8 -3.1 TIGR01177 family methyltransferase compare
MMP_RS06345 -0.8 -4.2 formate dehydrogenase accessory sulfurtransferase FdhD compare
MMP_RS05250 -0.8 -0.9 NFYB/HAP3 family transcription factor subunit compare
MMP_RS08340 -0.8 -2.3 4Fe-4S binding protein compare
MMP_RS03140 -0.8 -5.8 hypothetical protein compare
MMP_RS01975 -0.8 -6.3 hypothetical protein compare
MMP_RS01720 -0.8 -1.4 replication factor C large subunit compare
MMP_RS06685 -0.8 -4.0 formate dehydrogenase H subunit alpha selenocysteine-containing compare
MMP_RS08000 -0.8 -5.9 methyl coenzyme M reductase-arginine methyltransferase Mmp10 compare
MMP_RS01905 -0.8 -6.0 glycosyltransferase compare
MMP_RS03535 -0.8 -2.0 helix-turn-helix transcriptional regulator compare
MMP_RS08335 -0.8 -4.4 NADH-quinone oxidoreductase subunit B family protein compare
MMP_RS01325 -0.8 -1.6 dihydroneopterin aldolase family protein compare
MMP_RS06725 -0.8 -4.6 hypothetical protein compare
MMP_RS01875 -0.8 -4.6 N-acetyltransferase compare
MMP_RS01955 -0.8 -2.1 hypothetical protein compare
MMP_RS08165 -0.8 -1.5 phosphoglycerate dehydrogenase compare
MMP_RS05815 -0.7 -1.6 NOL1/NOP2/sun family putative RNA methylase compare
MMP_RS08820 -0.7 -3.0 hypothetical protein compare
MMP_RS03095 -0.7 -3.2 diphthine synthase compare
MMP_RS07380 -0.7 -1.3 transcription elongation factor Spt5 compare
MMP_RS03395 -0.7 -2.1 hypothetical protein compare
MMP_RS08915 -0.7 -2.1 2 5-diamino-6-(ribosylamino)-4(3H)-pyrimidinone 5'-phosphate reductase compare
MMP_RS03550 -0.7 -1.4 DUF2124 domain-containing protein compare
MMP_RS07705 -0.7 -4.2 transcriptional regulator compare
MMP_RS02245 -0.7 -2.1 hypothetical protein compare
MMP_RS03465 -0.7 -0.9 adenine phosphoribosyltransferase compare
MMP_RS02935 -0.7 -2.6 A24 family peptidase compare


Specific Phenotypes

None in this experiment

For Methanococcus maripaludis S2 in nutrient t1 experiments

For nutrient t1 Sodium acetate across organisms