Experiment set4IT008 for Sphingomonas koreensis DSMZ 15582

Compare to:

LB with Sodium perchlorate monohydrate 25 mM

200 most detrimental genes:

  gene name fitness t score description  
Ga0059261_0208 +0.9 4.2 Response regulator receiver domain compare
Ga0059261_3579 +0.8 3.8 hypothetical protein compare
Ga0059261_1652 +0.8 1.6 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily compare
Ga0059261_3271 +0.8 1.6 arsenate reductase (glutaredoxin) compare
Ga0059261_2680 +0.8 1.3 hypothetical protein compare
Ga0059261_2929 +0.6 1.5 oxygen-dependent methionine synthase, methyltransferase component MesD (from data) compare
Ga0059261_1316 +0.6 1.2 hypothetical protein compare
Ga0059261_3022 +0.6 2.6 MerT mercuric transport protein compare
Ga0059261_0448 +0.6 1.3 hypothetical protein compare
Ga0059261_1043 +0.6 1.9 Uncharacterized protein conserved in bacteria compare
Ga0059261_2215 +0.6 1.9 Thiamine monophosphate synthase compare
Ga0059261_0685 +0.6 1.6 pyruvate kinase compare
Ga0059261_1772 +0.5 1.1 MobA/MobL family compare
Ga0059261_3507 +0.5 4.2 His Kinase A (phospho-acceptor) domain/Response regulator receiver domain/Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase/CHASE3 domain compare
Ga0059261_0627 +0.5 0.9 cobalamin-5'-phosphate synthase (EC 2.7.8.26) compare
Ga0059261_3026 +0.5 1.5 Cation efflux family compare
Ga0059261_3911 +0.4 3.3 hypothetical protein compare
Ga0059261_3251 +0.4 1.2 Transcriptional regulator compare
Ga0059261_1349 +0.4 1.2 hypothetical protein compare
Ga0059261_2255 +0.4 1.5 nitrogen regulatory protein P-II family compare
Ga0059261_3808 +0.4 1.4 Pyrroline-5-carboxylate reductase compare
Ga0059261_2229 +0.4 1.6 Predicted transcriptional regulators compare
Ga0059261_0633 +0.4 1.3 Acetyltransferases, including N-acetylases of ribosomal proteins compare
Ga0059261_3862 +0.4 1.9 Multidrug resistance efflux pump compare
Ga0059261_0266 +0.4 0.6 hypothetical protein compare
Ga0059261_3581 +0.4 2.7 Alpha/beta hydrolase family compare
Ga0059261_0551 +0.4 1.2 Cytochrome c2 compare
Ga0059261_0931 +0.4 1.1 molybdenum cofactor biosynthesis protein MoaC compare
Ga0059261_2587 +0.4 1.9 hypothetical protein compare
Ga0059261_0272 +0.4 1.6 Uncharacterized small protein compare
Ga0059261_3638 +0.4 1.0 Predicted integral membrane protein (DUF2282) compare
Ga0059261_3490 +0.4 2.3 Response regulator receiver domain/Sigma-70, region 4 compare
Ga0059261_2351 +0.4 1.4 hypothetical protein compare
Ga0059261_3994 +0.4 2.1 hypothetical protein compare
Ga0059261_2694 +0.4 1.6 RadC-like JAB domain compare
Ga0059261_1991 +0.4 1.0 hypothetical protein compare
Ga0059261_0894 +0.3 2.0 hypothetical protein compare
Ga0059261_2746 +0.3 2.0 Predicted sugar nucleotidyltransferases compare
Ga0059261_1504 +0.3 2.1 Uncharacterized protein conserved in bacteria compare
Ga0059261_0390 +0.3 0.8 Ribbon-helix-helix protein, copG family compare
Ga0059261_1596 +0.3 1.4 CBS domain compare
Ga0059261_3491 +0.3 2.4 hypothetical protein compare
Ga0059261_3670 +0.3 1.7 tRNA compare
Ga0059261_0816 +0.3 1.1 hypothetical protein compare
Ga0059261_0526 +0.3 1.8 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases compare
Ga0059261_3783 +0.3 1.7 hypothetical protein compare
Ga0059261_1334 +0.3 1.5 Uncharacterized protein, possibly involved in aromatic compounds catabolism compare
Ga0059261_3433 +0.3 1.4 ATPases involved in chromosome partitioning compare
Ga0059261_3356 +0.3 0.6 hypothetical protein compare
Ga0059261_3132 +0.3 1.6 hypothetical protein compare
Ga0059261_0083 +0.3 0.6 aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B (EC 6.3.5.-) compare
Ga0059261_3635 +0.3 1.5 Predicted integral membrane protein compare
Ga0059261_2099 +0.3 1.6 flagellar hook-associated protein 3 compare
Ga0059261_1826 +0.3 1.2 Domain of unknown function (DUF1905) compare
Ga0059261_1811 +0.3 1.1 ATP:cob(I)alamin adenosyltransferase compare
Ga0059261_1047 +0.3 1.8 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Ga0059261_1263 +0.3 1.3 hypothetical protein compare
Ga0059261_0725 +0.3 1.2 Fructose-1,6-bisphosphate aldolase compare
Ga0059261_0890 +0.3 2.0 hypothetical protein compare
Ga0059261_3090 +0.3 1.8 Uncharacterized proteins, LmbE homologs compare
Ga0059261_3707 +0.3 1.7 Predicted DNA alkylation repair enzyme compare
Ga0059261_2913 +0.3 1.0 Type IV secretory pathway, VirB2 components (pilins) compare
Ga0059261_3492 +0.3 1.6 RNA polymerase sigma factor, sigma-70 family compare
Ga0059261_4154 +0.3 2.0 MiaB-like tRNA modifying enzyme compare
Ga0059261_1381 +0.3 1.4 Membrane protease subunits, stomatin/prohibitin homologs compare
Ga0059261_2143 +0.3 1.4 Zn-dependent proteases compare
Ga0059261_1478 +0.3 0.7 Predicted dioxygenase of extradiol dioxygenase family compare
Ga0059261_3367 +0.3 1.4 hypothetical protein compare
Ga0059261_1894 +0.3 1.3 D-xylose 1-dehydrogenase (EC 1.1.1.175) (from data) compare
Ga0059261_1380 +0.3 2.1 Membrane protease subunits, stomatin/prohibitin homologs compare
Ga0059261_2711 +0.3 1.4 homoserine dehydrogenase (EC 1.1.1.3) (from data) compare
Ga0059261_1041 +0.3 1.6 transcriptional regulator, LysR family compare
Ga0059261_4143 +0.3 1.5 hypothetical protein compare
Ga0059261_1049 +0.3 1.5 PEP-CTERM protein-sorting domain compare
Ga0059261_0252 +0.3 0.8 SpoIIAA-like compare
Ga0059261_1844 +0.3 1.7 O-6-methylguanine DNA methyltransferase compare
Ga0059261_4181 +0.3 1.6 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family compare
Ga0059261_1261 +0.3 0.7 hypothetical protein compare
Ga0059261_1923 +0.3 1.4 hypothetical protein compare
Ga0059261_0749 +0.3 1.3 Membrane transporters of cations and cationic drugs compare
Ga0059261_2086 +0.3 0.5 SAF-like compare
Ga0059261_3434 +0.3 1.9 Predicted ATPase compare
Ga0059261_2640 +0.3 1.2 Asp/Glu/Hydantoin racemase compare
Ga0059261_3833 +0.3 0.9 hypothetical protein compare
Ga0059261_4007 +0.3 0.7 Transcriptional regulators compare
Ga0059261_3696 +0.3 1.6 hypothetical protein compare
Ga0059261_1301 +0.2 1.0 Methyltransferase domain compare
Ga0059261_1730 +0.2 0.8 Surface presentation of antigens (SPOA) compare
Ga0059261_0072 +0.2 0.9 ATPases involved in chromosome partitioning compare
Ga0059261_4195 +0.2 1.9 polysaccharide deacetylase family protein, PEP-CTERM locus subfamily compare
Ga0059261_2183 +0.2 1.6 Uncharacterized conserved protein compare
Ga0059261_3144 +0.2 0.8 Transcriptional regulator compare
Ga0059261_1934 +0.2 1.1 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) compare
Ga0059261_2017 +0.2 1.8 Glycosyltransferase compare
Ga0059261_2886 +0.2 1.0 electron transfer flavoprotein beta subunit compare
Ga0059261_3800 +0.2 1.0 Cold shock proteins compare
Ga0059261_2801 +0.2 1.4 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Ga0059261_3081 +0.2 1.3 Uncharacterized conserved small protein compare
Ga0059261_2060 +0.2 1.7 flagellar biosynthetic protein FliR compare
Ga0059261_1994 +0.2 1.4 Uncharacterized protein conserved in bacteria compare
Ga0059261_3233 +0.2 1.4 Uncharacterized protein conserved in bacteria compare
Ga0059261_3440 +0.2 0.5 hypothetical protein compare
Ga0059261_0060 +0.2 0.9 Uncharacterized conserved protein compare
Ga0059261_2228 +0.2 1.2 Zn-dependent hydrolases, including glyoxylases compare
Ga0059261_4047 +0.2 2.0 2OG-Fe(II) oxygenase superfamily compare
Ga0059261_0829 +0.2 1.6 Transcriptional regulators compare
Ga0059261_4006 +0.2 1.6 Multidrug resistance efflux pump compare
Ga0059261_0752 +0.2 1.0 WYL domain/HTH domain compare
Ga0059261_2020 +0.2 1.7 Glycosyltransferase compare
Ga0059261_0932 +0.2 1.3 PilZ domain compare
Ga0059261_2441 +0.2 1.5 Uncharacterized conserved protein compare
Ga0059261_3620 +0.2 0.5 molybdenum cofactor biosynthesis protein A, bacterial compare
Ga0059261_3991 +0.2 1.7 Predicted hydrolase of the alpha/beta superfamily compare
Ga0059261_3604 +0.2 0.8 Uncharacterized protein conserved in bacteria compare
Ga0059261_2914 +0.2 0.7 Type IV secretory pathway, TrbD component compare
Ga0059261_3345 +0.2 0.5 TlyA family rRNA methyltransferase/putative hemolysin compare
Ga0059261_0305 +0.2 1.1 bacterioferritin compare
Ga0059261_3287 +0.2 1.5 Topoisomerase IB compare
Ga0059261_3993 +0.2 1.8 Acetyl/propionyl-CoA carboxylase, alpha subunit compare
Ga0059261_2528 +0.2 0.9 Uncharacterized conserved protein compare
Ga0059261_1303 +0.2 1.2 hypothetical protein compare
Ga0059261_3966 +0.2 0.9 Transcriptional regulators compare
Ga0059261_0452 +0.2 1.1 Predicted membrane protein compare
Ga0059261_3784 +0.2 1.7 DNA mismatch repair protein MutS compare
Ga0059261_1601 +0.2 0.6 protein-(glutamine-N5) methyltransferase, release factor-specific compare
Ga0059261_1553 +0.2 1.5 hypothetical protein compare
Ga0059261_3161 +0.2 1.4 tol-pal system-associated acyl-CoA thioesterase compare
Ga0059261_3443 +0.2 1.2 hypothetical protein compare
Ga0059261_1064 +0.2 0.8 Uncharacterized conserved protein compare
Ga0059261_1171 +0.2 1.2 Uncharacterized conserved protein compare
Ga0059261_0129 +0.2 1.1 MazG family protein compare
Ga0059261_3871 +0.2 0.5 formate dehydrogenase family accessory protein FdhD compare
Ga0059261_1126 +0.2 0.9 Response regulator compare
Ga0059261_0426 +0.2 1.5 hypothetical protein compare
Ga0059261_2361 +0.2 1.1 Staphylococcal nuclease homologue compare
Ga0059261_1213 +0.2 0.7 hypothetical protein compare
Ga0059261_0840 +0.2 1.3 Acyl-CoA dehydrogenases compare
Ga0059261_0128 +0.2 1.2 clan AA aspartic protease, TIGR02281 family compare
Ga0059261_2379 +0.2 1.3 P2 phage tail completion protein R (GpR) compare
Ga0059261_0848 +0.2 1.4 transcriptional regulator, TetR family compare
Ga0059261_0033 +0.2 1.3 transcriptional regulator, AsnC family compare
Ga0059261_0773 +0.2 0.8 Esterase/lipase compare
Ga0059261_3084 +0.2 1.5 Zn-dependent hydrolases, including glyoxylases compare
Ga0059261_3293 +0.2 1.3 hypothetical protein compare
Ga0059261_3052 +0.2 1.2 Uncharacterized conserved protein (DUF2285) compare
Ga0059261_1461 +0.2 1.3 Metal-dependent hydrolase compare
Ga0059261_3094 +0.2 1.3 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase/FKBP-type peptidyl-prolyl cis-trans isomerase compare
Ga0059261_2766 +0.2 1.1 2'-5' RNA ligase compare
Ga0059261_2291 +0.2 1.0 putative efflux protein, MATE family compare
Ga0059261_1272 +0.2 1.1 TIGR04222 domain compare
Ga0059261_3425 +0.2 0.9 Uncharacterized protein conserved in bacteria compare
Ga0059261_4169 +0.2 0.8 Kef-type K+ transport system, predicted NAD-binding component compare
Ga0059261_1307 +0.2 1.4 MIP family channel proteins compare
Ga0059261_1914 +0.2 0.7 Acetyltransferases compare
Ga0059261_4225 +0.2 0.9 3-isopropylmalate dehydratase, small subunit compare
Ga0059261_1972 +0.2 1.2 Domain of unknown function (DUF3814) compare
Ga0059261_1838 +0.2 1.3 hypothetical protein compare
Ga0059261_3285 +0.2 0.8 Acyl dehydratase compare
Ga0059261_2369 +0.2 1.1 phage baseplate assembly protein V compare
Ga0059261_3894 +0.2 1.4 transcriptional regulator, LacI family compare
Ga0059261_1175 +0.2 1.6 Beta-lactamase class C and other penicillin binding proteins compare
Ga0059261_3240 +0.2 1.2 Flp pilus assembly protein TadB compare
Ga0059261_0288 +0.2 1.1 Methyltransferase domain compare
Ga0059261_0871 +0.2 1.3 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Ga0059261_1410 +0.2 0.9 Fructose-2,6-bisphosphatase compare
Ga0059261_0022 +0.2 1.0 EF hand compare
Ga0059261_3721 +0.2 1.1 hypothetical protein compare
Ga0059261_2216 +0.2 0.9 pyridoxal phosphate enzyme, YggS family compare
Ga0059261_0936 +0.2 1.4 phenazine biosynthesis protein PhzF family compare
Ga0059261_3672 +0.2 1.5 7-keto-8-aminopelargonate synthetase and related enzymes compare
Ga0059261_1003 +0.2 1.2 hypothetical protein compare
Ga0059261_3601 +0.2 1.3 Predicted amidophosphoribosyltransferases compare
Ga0059261_2862 +0.2 1.2 Protein of unknown function (DUF2889) compare
Ga0059261_3056 +0.2 0.8 Protein of unknown function (DUF2958) compare
Ga0059261_1147 +0.2 1.3 Bacterial flagellin N-terminal helical region/Bacterial flagellin C-terminal helical region compare
Ga0059261_0645 +0.2 0.8 DNA replication and repair protein RecR compare
Ga0059261_2612 +0.2 0.7 Uncharacterized secreted protein compare
Ga0059261_3853 +0.2 1.3 RNA polymerase sigma factor, sigma-70 family compare
Ga0059261_1079 +0.2 1.4 Chemotaxis protein histidine kinase and related kinases compare
Ga0059261_0942 +0.2 1.3 Predicted permeases compare
Ga0059261_1757 +0.2 0.8 Protein of unknown function (DUF4007) compare
Ga0059261_3411 +0.2 1.2 RNA polymerase sigma factor, sigma-70 family compare
Ga0059261_0105 +0.2 1.5 hypothetical protein compare
Ga0059261_3668 +0.2 0.9 ABC transporter compare
Ga0059261_0557 +0.2 0.8 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Ga0059261_0319 +0.2 1.5 Uncharacterized protein conserved in bacteria compare
Ga0059261_0943 +0.2 1.1 Rhodanese-related sulfurtransferase compare
Ga0059261_1286 +0.2 1.0 phasin family protein compare
Ga0059261_1013 +0.2 1.4 Predicted transcriptional regulators compare
Ga0059261_4171 +0.2 0.7 redox-sensitive transcriptional activator SoxR compare
Ga0059261_0411 +0.2 0.6 Uncharacterized conserved protein compare
Ga0059261_2597 +0.2 1.2 RNA polymerase sigma factor, sigma-70 family compare
Ga0059261_3799 +0.2 0.6 hypothetical protein compare
Ga0059261_2725 +0.2 0.7 hypothetical protein compare
Ga0059261_2186 +0.2 0.9 Uncharacterized protein conserved in bacteria compare
Ga0059261_0807 +0.2 0.7 RNA methyltransferase, RsmE family compare
Ga0059261_4135 +0.2 1.1 DnaJ domain compare
Ga0059261_4140 +0.2 0.8 hypothetical protein compare
Ga0059261_3762 +0.2 0.7 Uncharacterized conserved protein compare
Ga0059261_2427 +0.2 1.1 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Sphingomonas koreensis DSMZ 15582 in stress experiments

For stress Sodium perchlorate monohydrate across organisms