Experiment set4IT008 for Caulobacter crescentus NA1000

Compare to:

PYE with Sodium nitrate 100 mM

200 most detrimental genes:

  gene name fitness t score description  
CCNA_01739 +4.6 27.3 LSU ribosomal protein L9P compare
CCNA_01622 +4.4 12.9 Rsh ppGpp hydrolase-synthetase compare
CCNA_01324 +4.0 16.6 LSU ribosomal protein L30P compare
CCNA_00699 +3.7 20.6 LSU ribosomal protein L28P compare
CCNA_01525 +3.7 18.5 flagellar biosynthesis repressor flbT compare
CCNA_01815 +3.7 23.7 nitrogen assimilation regulatory protein NtrC compare
CCNA_01712 +3.6 29.1 CopY/TcrY family transcriptional repressor compare
CCNA_00846 +3.6 29.3 proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase compare
CCNA_02416 +3.5 17.9 DNA-binding protein HU compare
CCNA_03281 +3.4 28.1 AsnC-family transcriptional regulator compare
CCNA_01012 +3.4 5.8 N-formimino-L-glutamate deiminase compare
CCNA_00962 +3.4 22.9 MarR-family transcriptional regulator compare
CCNA_00752 +3.3 17.9 3-hydroxybutyryl-CoA dehydrogenase compare
CCNA_02225 +3.2 17.3 ArsR family/SAM-dependent transcriptional regulator compare
CCNA_00518 +3.2 22.9 LSU ribosomal protein L25P compare
CCNA_03064 +3.1 16.9 PadR-family transcriptional regulator compare
CCNA_02103 +3.1 12.7 hypothetical protein compare
CCNA_00013 +3.1 25.2 protein-PII uridylyltransferase compare
CCNA_02957 +3.1 11.2 ArsR-family transcriptional regulator compare
CCNA_01059 +3.0 24.5 S-layer protein rsaA compare
CCNA_00257 +3.0 14.4 adenosylhomocysteinase compare
CCNA_03287 +3.0 22.6 PadR-family transcriptional regulator compare
CCNA_02026 +3.0 18.1 hypothetical protein compare
CCNA_02030 +2.9 10.3 hypothetical protein compare
CCNA_01730 +2.9 16.0 amidophosphoribosyltransferase compare
CCNA_01094 +2.9 8.7 hypothetical protein compare
CCNA_01814 +2.9 21.3 nitrogen regulation protein ntrB compare
CCNA_03043 +2.9 12.2 type IV pilin protein pilA compare
CCNA_02025 +2.9 11.0 hypothetical protein compare
CCNA_R0037 +2.8 13.0 tRNA-Glu compare
CCNA_01361 +2.8 11.8 PepSY superfamily protein compare
CCNA_01790 +2.7 11.5 protein translocase subunit secG compare
CCNA_00939 +2.7 13.9 MarR-family transcriptional regulator compare
CCNA_02575 +2.7 10.0 hypothetical protein compare
CCNA_03252 +2.7 17.9 CopY/TcrY-family transcriptional regulator compare
CCNA_02021 +2.7 10.7 hypothetical protein compare
CCNA_00847 +2.7 10.7 leucine-responsive regulatory protein compare
CCNA_02000 +2.6 4.5 SSU ribosomal protein S2P compare
CCNA_02028 +2.6 4.2 NTF2 superfamily protein compare
CCNA_02980 +2.6 19.7 tryptophan 2,3-dioxygenase compare
CCNA_03012 +2.6 16.7 peroxiredoxin compare
CCNA_03280 +2.6 22.8 pyruvate ferredoxin/flavodoxin oxidoreductase family protein compare
CCNA_02732 +2.6 6.3 hypothetical protein compare
CCNA_03289 +2.6 20.4 HicB-family RNA-binding protein compare
CCNA_01684 +2.5 16.9 phenylalanine-4-hydroxylase compare
CCNA_03379 +2.5 7.5 Cro/CI family transcriptional regulator compare
CCNA_03271 +2.5 20.4 methionine gamma-lyase compare
CCNA_01840 +2.5 20.3 MerR-family transcriptional regulator compare
CCNA_01058 +2.5 16.8 helix-turn-helix transcriptional regulator compare
CCNA_01751 +2.5 9.7 aminodeoxychorismate lyase compare
CCNA_00892 +2.5 6.8 phosphoenolpyruvate-protein phosphotransferase PtsP compare
CCNA_01802 +2.5 7.0 hypothetical protein compare
CCNA_01624 +2.5 7.8 orotate phosphoribosyltransferase compare
CCNA_03479 +2.5 16.0 MarR-family transcriptional regulator compare
CCNA_01801 +2.5 10.1 hypothetical protein compare
CCNA_03325 +2.5 10.9 hypothetical protein compare
CCNA_03989 +2.5 20.2 MarR-family HTH transcriptional regulator / N-acyltransferase compare
CCNA_01603 +2.5 12.5 aspartate aminotransferase compare
CCNA_02576 +2.5 17.4 phosphoribosylamidoimidazole-succinocarboxamide synthase compare
CCNA_03123 +2.5 15.5 ArsR-family transcriptional regulator compare
CCNA_01453 +2.5 12.9 electron transport complex I subunit, NADH-ubiquinone oxidoreductase compare
CCNA_03030 +2.5 16.2 cytochrome c2 compare
CCNA_01573 +2.5 13.2 ArsR-family transcriptional regulator compare
CCNA_02591 +2.4 14.3 glutaredoxin compare
CCNA_02910 +2.4 21.0 TonB-dependent receptor compare
CCNA_01942 +2.4 12.7 Rrf2 family protein compare
CCNA_00375 +2.4 9.1 hypothetical protein compare
CCNA_02164 +2.4 10.0 glutamate dehydrogenase/leucine dehydrogenase compare
CCNA_03961 +2.4 14.4 hypothetical protein compare
CCNA_03062 +2.4 14.6 cell wall hydrolase family protein compare
CCNA_03352 +2.4 11.6 YebC/PmpR transcriptional regulator compare
CCNA_03805 +2.4 16.8 PadR-family transcriptional regulator compare
CCNA_01931 +2.4 16.4 TetR-family transcriptional regulator compare
CCNA_03513 +2.4 13.1 cytochrome c oxidase subunit III coxC compare
CCNA_01964 +2.4 5.0 NADH dehydrogenase compare
CCNA_01186 +2.4 12.6 hypothetical protein compare
CCNA_02133 +2.4 10.0 glucokinase compare
CCNA_01780 +2.4 15.9 exopolyphosphatase compare
CCNA_03689 +2.3 17.6 alanine dehydrogenase compare
CCNA_00161 +2.3 13.0 hypothetical protein compare
CCNA_00920 +2.3 8.7 hypothetical protein compare
CCNA_02617 +2.3 19.2 histidinol-phosphate aminotransferase compare
CCNA_00207 +2.3 12.5 succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B compare
CCNA_03420 +2.3 11.3 hypothetical protein compare
CCNA_03031 +2.3 9.3 NlpC/P60 family protein compare
CCNA_03705 +2.3 7.1 hypothetical protein compare
CCNA_02616 +2.3 17.1 4-hydroxyphenylpyruvate dioxygenase compare
CCNA_03518 +2.3 19.5 cytochrome c oxidase polypeptide II coxB compare
CCNA_02242 +2.3 13.0 PHB granule-associated protein, phasin2 compare
CCNA_01583 +2.3 4.9 phosphate-binding protein compare
CCNA_01526 +2.3 10.6 flagellar biosynthesis regulatory protein flaF compare
CCNA_00389 +2.3 3.9 aminomethyltransferase family protein compare
CCNA_02073 +2.3 8.1 cupin domain transcriptional regulator compare
CCNA_02448 +2.3 12.2 hypothetical protein compare
CCNA_03384 +2.3 5.6 LSU ribosomal protein L31P compare
CCNA_01086 +2.2 14.9 GTP-binding protein lepA compare
CCNA_03464 +2.2 8.6 glycine cleavage system H protein compare
CCNA_01742 +2.2 14.5 hypothetical protein compare
CCNA_03811 +2.2 13.7 LysR-family transcriptional regulator compare
CCNA_01851 +2.2 18.0 quinol cytochrome oxidase polypeptide II compare
CCNA_00210 +2.2 18.7 TonB-dependent receptor compare
CCNA_02297 +2.2 9.8 hypoxanthine-guanine phosphoribosyltransferase compare
CCNA_01804 +2.2 13.7 glutathione peroxidase compare
CCNA_03105 +2.2 9.4 DnaJ domain protein compare
CCNA_01913 +2.2 16.2 MarR-family transcriptional regulator compare
CCNA_03951 +2.2 9.3 hypothetical protein compare
CCNA_01679 +2.2 12.6 succinylglutamic semialdehyde dehydrogenase compare
CCNA_03519 +2.2 16.2 PadR-family transcriptional regulator compare
CCNA_01505 +2.2 6.9 hypothetical protein compare
CCNA_02646 +2.1 5.0 cell division protein MraZ compare
CCNA_03959 +2.1 2.3 hypothetical protein compare
CCNA_03108 +2.1 17.3 TonB-dependent outer membrane receptor compare
CCNA_00505 +2.1 12.5 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
CCNA_01009 +2.1 13.4 N-formylglutamate deformylase compare
CCNA_00521 +2.1 4.3 antitoxin protein compare
CCNA_01528 +2.1 13.2 flagellin fljK compare
CCNA_00834 +2.1 12.0 flagellin FljM compare
CCNA_00447 +2.1 11.0 chemotaxis protein cheD compare
CCNA_02447 +2.1 11.3 PspA/IM30 family regulatory protein compare
CCNA_02467 +2.1 13.8 polyisoprenylphosphate hexose-1-phosphotransferase pssZ compare
CCNA_01181 +2.1 9.6 hypothetical protein compare
CCNA_02368 +2.1 15.6 alpha-glucosidase compare
CCNA_03936 +2.1 6.5 hypothetical protein compare
CCNA_00945 +2.0 10.9 chemotaxis protein MotD compare
CCNA_01849 +2.0 14.6 quinol cytochrome oxidase polypeptide III compare
CCNA_00769 +2.0 10.3 TetR family transcriptional regulator compare
CCNA_02287 +2.0 13.0 TetR-family transcriptional regulator compare
CCNA_01655 +2.0 10.7 cyclophilin-type peptidylprolyl cis-trans isomerase compare
CCNA_03129 +2.0 13.3 peptidoglycan-specific endopeptidase, M23 family compare
CCNA_01968 +2.0 5.3 pentapeptide repeats containing protein compare
CCNA_02254 +2.0 10.5 isovaleryl-CoA dehydrogenase compare
CCNA_00527 +2.0 13.0 hypothetical protein compare
CCNA_00441 +2.0 12.5 chemotaxis receiver domain protein cheYI compare
CCNA_03688 +2.0 12.5 AsnC-family transcriptional regulator compare
CCNA_00726 +2.0 15.4 acyl-CoA dehydrogenase compare
CCNA_01011 +2.0 10.3 imidazolonepropionase compare
CCNA_03938 +2.0 5.9 hypothetical protein compare
CCNA_00803 +2.0 8.7 chemotaxis protein cheW compare
CCNA_00684 +2.0 8.0 anti-sigma factor, ChrR-family compare
CCNA_02339 +2.0 12.5 methyltransferase compare
CCNA_03372 +2.0 9.1 bacterioferritin-associated ferredoxin compare
CCNA_00756 +2.0 6.1 hypothetical protein compare
CCNA_00031 +2.0 11.1 toxin protein VapC compare
CCNA_00206 +2.0 10.1 succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A compare
CCNA_01690 +2.0 5.6 MAPEG family membrane protein compare
CCNA_01242 +1.9 13.4 amino acid permease compare
CCNA_00947 +1.9 15.0 flagellar hook protein FlgE compare
CCNA_02976 +1.9 9.8 MCP-signal associated domain protein compare
CCNA_03215 +1.9 13.4 ARO8 family aminotransferase/HTH DNA-binding protein compare
CCNA_01775 +1.9 8.6 phosphoribosylformylglycinamidine cyclo-ligase compare
CCNA_01619 +1.9 10.8 NYN domain protein compare
CCNA_01629 +1.9 9.8 signal peptidase I compare
CCNA_01193 +1.9 15.1 amylosucrase compare
CCNA_01848 +1.9 13.4 quinol cytochrome oxidase polypeptide IV compare
CCNA_00895 +1.9 10.3 hypothetical protein compare
CCNA_00032 +1.9 9.5 antitoxin protein VapB compare
CCNA_03089 +1.9 12.3 hypothetical protein compare
CCNA_03808 +1.9 12.8 organic solvent resistance transport system Ttg2C protein compare
CCNA_02760 +1.9 6.7 hypothetical protein compare
CCNA_02151 +1.9 5.7 exodeoxyribonuclease VII small subunit compare
CCNA_02942 +1.9 6.1 nucleoside-diphosphate-sugar epimerase compare
CCNA_01813 +1.9 10.8 tRNA-dihydrouridine synthase compare
CCNA_00448 +1.9 11.6 cheU protein compare
CCNA_01020 +1.9 11.6 LacI-family transcriptional regulator compare
CCNA_02379 +1.9 11.6 hypothetical protein compare
CCNA_02534 +1.9 2.8 hypothetical protein compare
CCNA_R0054 +1.9 3.9 tRNA-Gly compare
CCNA_00924 +1.9 9.3 MarR/EmrR family transcriptional regulator compare
CCNA_03514 +1.9 12.5 cytochrome c oxidase assembly protein ctaG compare
CCNA_03949 +1.9 10.6 hypothetical protein compare
CCNA_03762 +1.9 5.4 acetolactate synthase-related protein compare
CCNA_03132 +1.9 8.7 transcriptional regulator, antitoxin protein higA compare
CCNA_02330 +1.9 8.8 hypothetical protein compare
CCNA_02663 +1.9 5.4 DnaK suppressor protein DksA compare
CCNA_00438 +1.9 7.7 hypothetical protein compare
CCNA_00400 +1.9 10.4 MarR/EmrR-family transcriptional regulator compare
CCNA_00781 +1.9 12.5 two-component receiver protein CpdR compare
CCNA_00443 +1.9 9.9 chemotaxis protein cheW compare
CCNA_00392 +1.8 13.5 dihydroorotase compare
CCNA_00368 +1.8 11.3 phosphonates transport system permease protein phnE compare
CCNA_01593 +1.8 9.7 Xaa-pro aminopeptidase compare
CCNA_01444 +1.8 9.7 poly(3-hydroxyalkanoate) polymerase compare
CCNA_03893 +1.8 5.0 hypothetical protein compare
CCNA_01850 +1.8 14.0 quinol cytochrome oxidase polypeptide I compare
CCNA_02475 +1.8 14.4 transcriptional regulator vanR compare
CCNA_00705 +1.8 6.1 hypothetical protein compare
CCNA_01541 +1.8 12.5 LysR-family transcriptional regulator compare
CCNA_01447 +1.8 11.0 homoserine dehydrogenase compare
CCNA_00998 +1.8 10.2 ROS/MUCR transcriptional regulator compare
CCNA_03371 +1.8 9.1 bacterioferritin compare
CCNA_01826 +1.8 12.0 vitamin B12 receptor compare
CCNA_02583 +1.8 8.7 phosphoribosylformylglycinamidine synthase I compare
CCNA_00944 +1.8 11.2 flagellar hook length determination protein compare
CCNA_02546 +1.8 12.7 GGDEF/response regulator protein PleD compare
CCNA_03643 +1.8 2.8 succinate dehydrogenase membrane anchor subunit compare
CCNA_02805 +1.8 9.3 hypothetical protein compare
CCNA_00079 +1.8 7.5 MerR-family transcriptional regulator compare
CCNA_01979 +1.8 7.9 LexA repressor compare
CCNA_00675 +1.8 9.4 VapC-like PIN domain ribonuclease compare
CCNA_02586 +1.8 12.0 phosphoribosylformylglycinamidine synthase II compare


Specific Phenotypes

For 1 genes in this experiment

For stress Sodium nitrate in Caulobacter crescentus NA1000

For stress Sodium nitrate across organisms