Experiment set4IT008 for Caulobacter crescentus NA1000
PYE with Sodium nitrate 100 mM
Group: stressMedia: PYE + Sodium nitrate (100 mM)
Culturing: Caulo_ML2, 24-well transparent microplate; Multitron, Aerobic, at 30 (C), shaken=700 rpm
Growth: about 4.2 generations
By: Adam on 1-May-17
Media components: 2 g/L Bacto Peptone, 1 g/L Yeast Extract, 0.8 mM Magnesium sulfate, 0.5 mM Calcium chloride
Growth plate: 1709 A5
Specific Phenotypes
For 1 genes in this experiment
For stress Sodium nitrate in Caulobacter crescentus NA1000
For stress Sodium nitrate across organisms
SEED Subsystems
| Subsystem | #Specific |
|---|---|
| Carboxysome | 1 |
| Cyanate hydrolysis | 1 |
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| CO2 fixation into oxaloacetate (anaplerotic) | 2 | 2 | 1 |
| cyanate degradation | 3 | 2 | 1 |
| C4 photosynthetic carbon assimilation cycle, NADP-ME type | 7 | 5 | 1 |
| C4 photosynthetic carbon assimilation cycle, NAD-ME type | 11 | 7 | 1 |
| 3-hydroxypropanoate cycle | 13 | 9 | 1 |
| glyoxylate assimilation | 13 | 8 | 1 |
| C4 photosynthetic carbon assimilation cycle, PEPCK type | 14 | 8 | 1 |
| superpathway of the 3-hydroxypropanoate cycle | 18 | 12 | 1 |
| 3-hydroxypropanoate/4-hydroxybutanate cycle | 18 | 11 | 1 |
| gluconeogenesis II (Methanobacterium thermoautotrophicum) | 18 | 7 | 1 |
| Methanobacterium thermoautotrophicum biosynthetic metabolism | 56 | 18 | 1 |