Experiment set4IT008 for Bifidobacterium breve UCC2003

Compare to:

Recovery broth with Isovaleric acid 75 mM

200 most detrimental genes:

  gene name fitness t score description  
BBR_RS11210 +1.0 9.7 phosphoenolpyruvate--protein phosphotransferase compare
BBR_RS20480 +1.0 1.7 membrane protein compare
BBR_RS18700 +1.0 8.5 PTS beta-glucoside transporter subunit EIIBCA compare
BBR_RS18695 +1.0 8.5 PRD domain-containing protein compare
BBR_RS14850 +0.9 2.4 VOC family protein compare
BBR_RS11205 +0.9 6.2 HPr family phosphocarrier protein compare
BBR_RS13305 +0.7 3.6 transcriptional repressor compare
BBR_RS11590 +0.7 1.0 30S ribosomal protein S18 compare
BBR_RS12375 +0.7 1.3 pantetheine-phosphate adenylyltransferase compare
BBR_RS18140 +0.7 1.5 tRNA-Asp compare
BBR_RS12310 +0.7 1.0 signal recognition particle protein compare
BBR_RS15915 +0.6 0.8 type II toxin-antitoxin system antitoxin, RelB/DinJ family compare
BBR_RS14715 +0.6 1.7 XRE family transcriptional regulator compare
BBR_RS17135 +0.6 0.8 RluA family pseudouridine synthase compare
BBR_RS15695 +0.6 3.5 membrane channel protein compare
BBR_RS19435 +0.6 1.6 pyridoxal phosphate-dependent aminotransferase compare
BBR_RS14400 +0.5 4.8 acetyltransferase compare
BBR_RS20865 +0.5 2.5 glycogen phosphorylase compare
BBR_RS14335 +0.5 2.0 hypothetical protein compare
BBR_RS18645 +0.5 4.2 DNA-binding response regulator compare
BBR_RS13935 +0.5 2.9 hypothetical protein compare
BBR_RS16555 +0.5 0.5 DNA translocase FtsK compare
BBR_RS14160 +0.5 2.4 peptidylprolyl isomerase compare
BBR_RS14485 +0.5 3.4 DUF3000 domain-containing protein compare
BBR_RS16810 +0.5 4.0 aldose 1-epimerase compare
BBR_RS16295 +0.4 2.1 DNA methyltransferase compare
BBR_RS15860 +0.4 0.8 DUF2316 domain-containing protein compare
BBR_RS12910 +0.4 4.0 galactokinase compare
BBR_RS13435 +0.4 3.4 hypothetical protein compare
BBR_RS14945 +0.4 2.7 peptidase E compare
BBR_RS18495 +0.4 3.0 ROK family protein compare
BBR_RS10285 +0.4 1.1 membrane protein compare
BBR_RS15190 +0.4 1.7 NAD(P) transhydrogenase subunit alpha compare
BBR_RS20855 +0.4 0.9 hypothetical protein compare
BBR_RS15665 +0.4 1.2 preprotein translocase subunit YajC compare
BBR_RS13515 +0.4 2.4 putative sulfate exporter family transporter compare
BBR_RS14365 +0.4 2.5 hypothetical protein compare
BBR_RS12880 +0.4 2.6 Crp/Fnr family transcriptional regulator compare
BBR_RS13430 +0.3 2.7 hypothetical protein compare
BBR_RS20960 +0.3 1.4 hypothetical protein compare
BBR_RS14775 +0.3 2.0 hypothetical protein compare
BBR_RS14700 +0.3 1.0 type II toxin-antitoxin system PemK/MazF family toxin compare
BBR_RS11975 +0.3 1.2 hypothetical protein compare
BBR_RS21155 +0.3 1.8 hypothetical protein compare
BBR_RS20200 +0.3 3.2 alpha-galactosidase compare
BBR_RS14470 +0.3 1.6 hypothetical protein compare
BBR_RS13700 +0.3 2.4 diaminopimelate epimerase compare
BBR_RS17685 +0.3 1.6 hypothetical protein compare
BBR_RS10555 +0.3 0.5 DUF3073 domain-containing protein compare
BBR_RS21040 +0.3 1.3 transcription factor WhiB compare
BBR_RS14950 +0.3 1.7 Pyrazinamidase/Nicotinamidase compare
BBR_RS13540 +0.3 2.2 alcohol dehydrogenase compare
BBR_RS12600 +0.3 1.9 serine acetyltransferase compare
BBR_RS20710 +0.3 2.0 hypothetical protein compare
BBR_RS12030 +0.3 1.1 F0F1 ATP synthase subunit epsilon compare
BBR_RS15455 +0.3 0.7 orotate phosphoribosyltransferase compare
BBR_RS15030 +0.3 1.6 mRNA interferase PemK compare
BBR_RS11145 +0.3 1.1 hypothetical protein compare
BBR_RS17305 +0.3 1.4 hypothetical protein compare
BBR_RS12805 +0.3 0.9 hypothetical protein compare
BBR_RS16630 +0.3 1.6 exodeoxyribonuclease III compare
BBR_RS17000 +0.3 2.2 GTPase HflX compare
BBR_RS17235 +0.3 1.7 DNA-binding response regulator compare
BBR_RS16020 +0.3 0.9 hypothetical protein compare
BBR_RS10770 +0.3 2.0 CrcB family protein compare
BBR_RS14460 +0.3 2.1 amidohydrolase compare
BBR_RS15560 +0.3 1.7 aminotransferase class V-fold PLP-dependent enzyme compare
BBR_RS12580 +0.3 1.4 transposase compare
BBR_RS12770 +0.3 1.1 hypothetical protein compare
BBR_RS15755 +0.3 0.4 hypothetical protein compare
BBR_RS16795 +0.3 1.2 Cys-tRNA(Pro) deacylase compare
BBR_RS18220 +0.3 2.2 glycosyltransferase family 2 protein compare
BBR_RS14150 +0.3 1.4 hypothetical protein compare
BBR_RS16885 +0.3 2.1 carbohydrate kinase compare
BBR_RS11640 +0.3 0.6 hypothetical protein compare
BBR_RS12715 +0.3 1.5 helix-turn-helix domain-containing protein compare
BBR_RS20930 +0.3 0.9 hypothetical protein compare
BBR_RS15730 +0.3 0.7 hypothetical protein compare
BBR_RS21170 +0.3 2.0 membrane protein insertion efficiency factor YidD compare
BBR_RS20780 +0.2 0.8 hypothetical protein compare
BBR_RS15330 +0.2 1.2 hypothetical protein compare
BBR_RS12855 +0.2 1.7 glycine cleavage system protein H compare
BBR_RS12560 +0.2 1.7 transposase compare
BBR_RS12395 +0.2 2.1 hypothetical protein compare
BBR_RS21055 +0.2 0.8 hypothetical protein compare
BBR_RS15015 +0.2 1.2 cytidine deaminase compare
BBR_RS18525 +0.2 1.0 hypothetical protein compare
BBR_RS16010 +0.2 1.0 hypothetical protein compare
BBR_RS15595 +0.2 1.4 fructosamine kinase compare
BBR_RS10750 +0.2 2.1 class II fructose-bisphosphate aldolase compare
BBR_RS12645 +0.2 1.5 acyltransferase compare
BBR_RS13880 +0.2 1.4 hypothetical protein compare
BBR_RS14865 +0.2 1.6 haloacid dehalogenase-like hydrolase compare
BBR_RS17075 +0.2 1.7 dihydrodipicolinate synthase family protein compare
BBR_RS16890 +0.2 1.2 glucose/galactose transporter compare
BBR_RS17115 +0.2 1.4 aldo/keto reductase compare
BBR_RS18130 +0.2 1.9 glucokinase compare
BBR_RS13590 +0.2 1.1 hypothetical protein compare
BBR_RS14220 +0.2 1.5 phosphomannomutase compare
BBR_RS20170 +0.2 2.0 LacI family transcriptional regulator compare
BBR_RS17040 +0.2 1.1 hypothetical protein compare
BBR_RS13685 +0.2 1.1 DUF4143 domain-containing protein compare
BBR_RS20830 +0.2 0.5 hypothetical protein compare
BBR_RS19440 +0.2 2.0 polysaccharide deacetylase family protein compare
BBR_RS14040 +0.2 0.8 GNAT family N-acetyltransferase compare
BBR_RS16330 +0.2 1.6 LacI family transcriptional regulator compare
BBR_RS16170 +0.2 0.8 hypothetical protein compare
BBR_RS13175 +0.2 1.3 deoxyguanosinetriphosphate triphosphohydrolase compare
BBR_RS15850 +0.2 1.0 ASCH domain-containing protein compare
BBR_RS14490 +0.2 1.5 ribonuclease D compare
BBR_RS15325 +0.2 0.7 hypothetical protein compare
BBR_RS15460 +0.2 0.9 hypothetical protein compare
BBR_RS18595 +0.2 1.8 1,4-dihydroxy-2-naphthoate octaprenyltransferase compare
BBR_RS14535 +0.2 1.3 pyridoxal phosphate-dependent aminotransferase compare
BBR_RS13015 +0.2 1.3 peptide deformylase compare
BBR_RS18390 +0.2 1.2 hypothetical protein compare
BBR_RS13690 +0.2 1.3 patatin family protein compare
BBR_RS18135 +0.2 1.2 hypothetical protein compare
BBR_RS11965 +0.2 1.4 hypothetical protein compare
BBR_RS20750 +0.2 0.7 GntR family transcriptional regulator compare
BBR_RS16195 +0.2 0.8 hypothetical protein compare
BBR_RS16345 +0.2 1.5 hypothetical protein compare
BBR_RS14900 +0.2 1.1 DNA-binding response regulator compare
BBR_RS16710 +0.2 1.1 hypothetical protein compare
BBR_RS13735 +0.2 0.4 Lon protease compare
BBR_RS12720 +0.2 0.6 hypothetical protein compare
BBR_RS18625 +0.2 1.6 alpha/beta hydrolase compare
BBR_RS15930 +0.2 0.8 RNA polymerase sigma factor compare
BBR_RS15885 +0.2 1.1 histidine kinase compare
BBR_RS10735 +0.2 1.5 zinc metalloprotease HtpX compare
BBR_RS12915 +0.2 0.9 glycine synthesis protein GlyXS (from data) compare
BBR_RS16970 +0.2 1.2 phosphoglycerate dehydrogenase compare
BBR_RS15100 +0.2 1.5 murein L,D-transpeptidase compare
BBR_RS14765 +0.2 0.5 hypothetical protein compare
BBR_RS11295 +0.2 1.1 transcriptional regulator compare
BBR_RS15865 +0.2 0.9 GNAT family N-acetyltransferase compare
BBR_RS15280 +0.2 1.1 hypothetical protein compare
BBR_RS14835 +0.2 1.2 sulfite exporter TauE/SafE family protein compare
BBR_RS15360 +0.2 0.6 hypothetical protein compare
BBR_RS20840 +0.2 0.7 hypothetical protein compare
BBR_RS21145 +0.2 1.2 ISL3 family transposase compare
BBR_RS15555 +0.2 0.6 HAD family hydrolase compare
BBR_RS17700 +0.2 1.1 CRISPR-associated protein Cas4 compare
BBR_RS11890 +0.2 1.1 DUF624 domain-containing protein compare
BBR_RS13705 +0.2 1.0 Conserved hypothetical membrane spanning protein, contains a vitamin K epoxide reductase domain compare
BBR_RS20085 +0.2 1.3 histidine phosphatase family protein compare
BBR_RS13955 +0.2 1.3 argininosuccinate lyase compare
BBR_RS16085 +0.2 1.2 anthranilate synthase component I compare
BBR_RS14840 +0.2 1.0 IS3 family transposase compare
BBR_RS12185 +0.2 1.3 methylated-DNA--[protein]-cysteine S-methyltransferase compare
BBR_RS11135 +0.2 1.5 dihydrodipicolinate synthase family protein compare
BBR_RS14670 +0.2 1.3 excinuclease ABC subunit UvrA compare
BBR_RS15290 +0.2 1.0 ABC transporter ATP-binding protein compare
BBR_RS21005 +0.2 1.0 hypothetical protein compare
BBR_RS16505 +0.2 1.0 hypothetical protein compare
BBR_RS17070 +0.2 1.2 hypothetical protein compare
BBR_RS14280 +0.2 0.4 dephospho-CoA kinase compare
BBR_RS21045 +0.2 1.1 hypothetical protein compare
BBR_RS17875 +0.2 1.2 glucan 1,3-beta-glucosidase compare
BBR_RS15715 +0.2 0.9 Cof-type HAD-IIB family hydrolase compare
BBR_RS18470 +0.2 1.3 MFS transporter compare
BBR_RS20100 +0.2 1.5 YhgE/Pip domain-containing protein compare
BBR_RS15500 +0.2 1.0 cobalt ABC transporter permease compare
BBR_RS12400 +0.2 1.4 nicotinate phosphoribosyltransferase compare
BBR_RS17520 +0.2 0.9 hypothetical protein compare
BBR_RS15320 +0.2 0.7 hypothetical protein compare
BBR_RS10745 +0.2 1.4 DUF6 domain-containing protein compare
BBR_RS17005 +0.2 1.1 methyltransferase domain-containing protein compare
BBR_RS16870 +0.2 1.0 ROK family protein compare
BBR_RS16380 +0.2 0.7 hypothetical protein compare
BBR_RS15735 +0.2 1.1 Helicase helY compare
BBR_RS20875 +0.2 0.7 hypothetical protein compare
BBR_RS16395 +0.2 1.2 hypothetical protein compare
BBR_RS16040 +0.2 0.5 hypothetical protein compare
BBR_RS13530 +0.2 1.0 CrcB family protein compare
BBR_RS18320 +0.2 0.8 hypothetical protein compare
BBR_RS15670 +0.2 0.5 adenine phosphoribosyltransferase compare
BBR_RS12815 +0.2 1.1 hypothetical protein compare
BBR_RS15940 +0.1 0.8 hypothetical protein compare
BBR_RS17080 +0.1 1.0 hypothetical protein compare
BBR_RS10765 +0.1 1.3 hypothetical protein compare
BBR_RS10980 +0.1 1.3 TetR/AcrR family transcriptional regulator compare
BBR_RS13325 +0.1 0.6 hypothetical protein compare
BBR_RS15870 +0.1 0.5 hypothetical protein compare
BBR_RS18195 +0.1 1.3 hypothetical protein compare
BBR_RS16780 +0.1 1.0 hypothetical protein compare
BBR_RS12635 +0.1 1.3 polysaccharide biosynthesis protein compare
BBR_RS16270 +0.1 0.9 competence protein ComEA compare
BBR_RS19535 +0.1 1.3 homoserine kinase compare
BBR_RS19710 +0.1 1.2 FAA hydrolase family protein compare
BBR_RS20065 +0.1 1.2 carbohydrate ABC transporter permease compare
BBR_RS19370 +0.1 0.7 type I polyketide synthase compare
BBR_RS18315 +0.1 0.7 hypothetical protein compare
BBR_RS15215 +0.1 0.9 MazG-like protein compare
BBR_RS20885 +0.1 0.2 hypothetical protein compare
BBR_RS13195 +0.1 0.9 pyridoxal 5'-phosphate synthase lyase subunit PdxS compare
BBR_RS16860 +0.1 1.1 N-acetylglucosamine-6-phosphate deacetylase compare
BBR_RS20075 +0.1 1.2 LacI family transcriptional regulator compare
BBR_RS13210 +0.1 0.9 anion transporter compare
BBR_RS13855 +0.1 1.0 ABC transporter ATP-binding protein compare


Specific Phenotypes

None in this experiment

For Bifidobacterium breve UCC2003 in stress experiments

For stress Isovaleric acid across organisms