Experiment set4IT007 for Pseudomonas fluorescens SBW25-INTG
N-Acetyl-D-Glucosamine nitrogen source; with MOPS
Quality Metrics:
| Time0 | 1/6/20 PseudoSBW25_INTG_ML3_set4 | which Time0s the sample was compared to |
| cor12 | 0.17 | rank correlation(fit1, fit2), where fit1 is fitness for the first half (10-50%) and fit2 is fitness for the second half (50-90%) of each gene |
| maxFit | 2.21 | The maximum fitness value |
| opcor | 0.17 | rank correlation(upstream gene, downstream gene) over pairs that are adjacent and likely to be in the same operon |
| adjcor | 0.06 | like opcor but for adjacent genes that are not on the same strand |
| gccor | -0.00 | linear correlation of gene fitness and gene GC content |
| mad12 | 0.36 | median absolute difference of fit1, fit2 |
| mad12c | 1.09 | median absolute difference of log count for 1st and 2nd half of genes in this sample |
| mad12c_t0 | 1.02 | like mad12c but for the Time0s |
| gMed | 237 | median reads per gene in this sample |
| gMedt0 | 634 | median reads per gene in the Time0 sample |
| gMean | 354 | mean reads per gene in this sample |
| nMapped | 3.239 M | #reads for this sample that corresponded to a known strain (in millions) |
| nPastEnd | 0.001 M | #reads that corresponded to a strain that has an insertion within the suicide vector instead of within the genome. |
| nGenic | 1.944 M | #reads that lie within central 10-90% of a gene |
| nUsed | 1.937 M | #reads used to estimate gene fitness (genic and enough coverage for strain and for gene) |
Specific Phenotypes
For 6 genes in this experiment
For nitrogen source D-Glucose in Pseudomonas fluorescens SBW25-INTG